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Gene: Pdzd8 (PDZ domain containing 8) Rattus norvegicus

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Symbol:

Pdzd8

Name:

PDZ domain containing 8

RGD ID:

1308622

Description:

Predicted to enable lipid binding activity and zinc ion binding activity. Predicted to be involved in several processes, including mitochondrial calcium ion homeostasis; mitochondrion-endoplasmic reticulum membrane tethering; and regulation of cell morphogenesis. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in mitochondria-associated endoplasmic reticulum membrane contact site. Orthologous to human PDZD8 (PDZ domain containing 8); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC308000; PDZ domain-containing protein 8; Pdzk8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDZD8 (PDZ domain containing 8)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Pdzd8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdzd8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDZD8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDZD8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdzd8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDZD8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDZD8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdzd8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pdzd8 (PDZ domain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PDZD8 (PDZ domain containing 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pdzd8 (PDZ domain containing 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdzd8 (PDZ domain containing 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10362	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C53B4.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pdzd8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	268,435,304 - 268,492,923 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	268,435,304 - 268,492,913 (-)	Ensembl				GRCr8
mRatBN7.2	1	258,449,218 - 258,506,828 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	258,449,218 - 258,506,828 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	266,654,746 - 266,712,507 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	273,360,771 - 273,418,533 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	266,001,930 - 266,059,796 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	280,458,041 - 280,515,650 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	280,458,041 - 280,515,650 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	287,818,525 - 287,876,134 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	265,825,444 - 265,883,170 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	254,103,043 - 254,160,651 (-)	NCBI		Celera
RGSC_v3.1	1	266,039,911 - 266,094,082 (-)	NCBI
Cytogenetic Map	1	q55	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Intellectual Developmental Disorder with Autism and Dysmorphic Facies (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chlorpyrifos (EXP,ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

GSK-J4 (ISO)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

mercury dichloride (EXP)

N-methyl-4-phenylpyridinium (ISO)

paracetamol (EXP)

pentachlorophenol (ISO)

perfluorooctanoic acid (ISO)

potassium dichromate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid transport (IEA)

mitochondrial calcium ion homeostasis (IBA,IEA,ISO)

mitochondrion-endoplasmic reticulum membrane tethering (IBA,IEA,ISO)

Cellular Component

endoplasmic reticulum membrane (IEA,ISO)

membrane (IEA)

mitochondria-associated endoplasmic reticulum membrane contact site (IBA,IEA,ISO)

mitochondrion (IEA)

Molecular Function

lipid binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19946888	PMID:21834987	PMID:29097544	PMID:37247681

Genomics

Comparative Map Data

Pdzd8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	268,435,304 - 268,492,923 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	268,435,304 - 268,492,913 (-)	Ensembl				GRCr8
mRatBN7.2	1	258,449,218 - 258,506,828 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	258,449,218 - 258,506,828 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	266,654,746 - 266,712,507 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	273,360,771 - 273,418,533 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	266,001,930 - 266,059,796 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	280,458,041 - 280,515,650 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	280,458,041 - 280,515,650 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	287,818,525 - 287,876,134 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	265,825,444 - 265,883,170 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	254,103,043 - 254,160,651 (-)	NCBI		Celera
RGSC_v3.1	1	266,039,911 - 266,094,082 (-)	NCBI
Cytogenetic Map	1	q55	NCBI

PDZD8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	117,277,274 - 117,375,440 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	117,277,274 - 117,376,020 (-)	Ensembl			hg38	GRCh38
GRCh37	10	119,036,785 - 119,134,951 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	119,032,596 - 119,124,927 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	119,032,595 - 119,124,927	NCBI
Celera	10	112,772,703 - 112,865,000 (-)	NCBI		Celera
Cytogenetic Map	10	q25.3-q26.11	NCBI
HuRef	10	112,670,274 - 112,763,195 (-)	NCBI		HuRef
CHM1_1	10	119,326,798 - 119,419,104 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	118,171,771 - 118,269,881 (-)	NCBI		T2T-CHM13v2.0

Pdzd8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	59,284,516 - 59,334,212 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	59,285,610 - 59,334,212 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	59,296,084 - 59,345,780 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	59,297,178 - 59,345,780 (-)	Ensembl			mm10	GRCm38
MGSCv37	19	59,370,574 - 59,420,270 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	59,351,678 - 59,399,030 (-)	NCBI		MGSCv36	mm8
Celera	19	61,496,563 - 61,545,435 (-)	NCBI		Celera
Cytogenetic Map	19	D3	NCBI
cM Map	19	54.65	NCBI

Pdzd8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	21,980,447 - 22,060,826 (-)	Ensembl
ChiLan1.0	NW_004955431	21,980,447 - 22,060,826 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDZD8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	129,153,111 - 129,245,780 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	129,158,120 - 129,251,103 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	113,862,457 - 113,958,281 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	117,288,123 - 117,385,317 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	117,293,877 - 117,385,317 (-)	Ensembl			panPan2	panpan1.1

PDZD8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	27,768,182 - 27,853,958 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	27,772,651 - 27,853,769 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	27,902,798 - 27,997,253 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	28,289,062 - 28,383,545 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	28,302,187 - 28,383,513 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	27,861,675 - 27,945,273 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	27,863,751 - 27,958,752 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	28,058,685 - 28,153,690 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pdzd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	18,370,785 - 18,451,565 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	7,114,383 - 7,190,572 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	7,109,733 - 7,190,518 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDZD8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	127,395,823 - 127,502,400 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	127,395,842 - 127,502,421 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	138,800,410 - 138,903,648 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDZD8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	110,081,713 - 110,184,348 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	110,082,680 - 110,184,260 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	71,336,767 - 71,441,109 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdzd8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	29,242,196 - 29,353,336 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624737	29,242,198 - 29,353,336 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pdzd8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	56,762,853 - 56,822,224 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	331
Count of miRNA genes:	219
Interacting mature miRNAs:	250
Transcripts:	ENSRNOT00000068082
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	263946994	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1600390	Niddm64	Non-insulin dependent diabetes mellitus QTL 64		0.003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	257624997	270518180	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	255849111	270518180	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

AI058870

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	258,450,567 - 258,450,752 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	280,459,391 - 280,459,575	NCBI	Rnor6.0
Rnor_5.0	1	287,819,875 - 287,820,059	UniSTS	Rnor5.0
RGSC_v3.4	1	265,826,794 - 265,826,978	UniSTS	RGSC3.4
Celera	1	254,104,393 - 254,104,577	UniSTS
RH 3.4 Map	1	1702.3	UniSTS
Cytogenetic Map	1	q55	UniSTS

D19Mgc7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	258,452,910 - 258,453,500 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	280,461,734 - 280,462,323	NCBI	Rnor6.0
Rnor_5.0	1	287,822,218 - 287,822,807	UniSTS	Rnor5.0
RGSC_v3.4	1	265,829,137 - 265,829,726	UniSTS	RGSC3.4
Celera	1	254,106,736 - 254,107,325	UniSTS
Cytogenetic Map	1	q55	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068082 ⟹ ENSRNOP00000063181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	268,435,304 - 268,492,913 (-)	Ensembl
mRatBN7.2 Ensembl	1	258,449,218 - 258,506,828 (-)	Ensembl
Rnor_6.0 Ensembl	1	280,458,041 - 280,515,650 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172830 ⟹ ENSRNOP00000107980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	268,435,304 - 268,492,875 (-)	Ensembl

RefSeq Acc Id:

NM_001107446 ⟹ NP_001100916

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	268,435,304 - 268,492,913 (-)	NCBI
mRatBN7.2	1	258,449,218 - 258,506,828 (-)	NCBI
Rnor_6.0	1	280,458,041 - 280,515,650 (-)	NCBI
Rnor_5.0	1	287,818,525 - 287,876,134 (-)	NCBI
RGSC_v3.4	1	265,825,444 - 265,883,170 (-)	RGD
Celera	1	254,103,043 - 254,160,651 (-)	RGD

Sequence:

show sequence

CGCCGCCCGTCGGCCGCTCGGGCCGCCCCCGGGGGAAGAGTCTGAGGAGGCGCGGGGCCGCGGC
GGACTAAGGCGCCGCAAGGCAGCATCGGGCTGCGGACGCTCGGTTCGGGCCCAGGGAGCTGCTC
ATCTGCGACCGATGTCCTCAAGATGGAGGCGGCGGGGGCGACGGCGTGAGGAGGAGGAGGGCGG
CGCGGAGAGCGCGGGAGCAGGCCGAGGGGCGGCGGGGGCGGCGGGATGGGGCTGCTGCTCATGA
TCTTGGCGTCGGCCGTGCTGGGCTCGTTCCTCACGCTGCTCACACAGTTCCTGCTGCTCTACCG
CAGACAGCCCGAACCGCGGGCAGACGAGGCAGCCCGCGCGGGCGACGGCTTCCGCTACCTTAAG
CCGGTGCCGGGCCTGCCCCTCAGGGAGTACCTCTATGGCGGCGGCGCCGAGGAGCCCGCTGCTG
GGTCCTCCGAGGCCGGCGCCAGCACGACACCGACCCCCGACAGCCCGGCCCCGCCGACGCTGGA
GACCTGCTACTTCCTCAACGCCACCATCCTGTTCCTGTTCCGGGAGCTGCGGGACACCGCGCTC
GCCCGCCGCTGGGTCACCAAGAAGATCAAGGTGGAGTTCGAGGAGCTGCTGCAGACCAAGACGG
CCGGCCGCCTGCTGGAGGGGCTGAGCCTGCGCGACGTGTTCCTGGGTGACACCGTGCCCTACAT
CAAGACCATCCGGCTGGTGCGGCCCGTGGTGGCTTCGGGCACCGGCGAGCCCGACGAACCCGAC
GGGGACGCTCTGCCCGCCACCTGCCCGGAGGAGCTGGCCTTTGAGGCGGAGGTGGAGTACAACG
GCGGCTTCCACCTGGCCATCGACGTGGATCTAGTGTTCGGCAAGTCCGCCTACCTGTTCGTGAA
GCTGTCGCGCGTGGTGGGTAGGCTGCGCTTCGTCCTCACCCGCGTGCCCTTCACCCACTGGTTC
TTCTCCTTCGTGGAGGACCCGCTGATTGACTTCGAGGTGCGCTCCCAGTTCGAGGGGCGGCCCA
TGCCCCAGCTCACCTCCATCATCGTCAACCAGCTGAAGAAGATCATCAAGCGCAAGCACACCCT
GCCCAGTTACAAGATCAGGTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAA
GATGAAGATCTTATCCATATTCAACAATGGGCACTTACTGAGGGCCGGCTTAAAGTTACATTGC
TAGAATGTAGCAGGTTACTCATTTTTGGATCCTATGAGAGAGAAGCAAATGTTCATTGCACACT
TGAGCTAAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACGGTTGAATTAATA
AAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGCTATGCTG
GGCATGTCATAATTGAAACCGTGGCCCCAAACTCACCTGCTGCCATTGCAGATCTTCAGCGGGG
AGATCGGCTCATTGCTATTGGAGGTGTGAAAATCACATCGACACTGCAAGTGTTAAAACTCATC
AAGCAGGCCGGCGACCGCGTGCTGGTGTACTACCAGAGGCCTGTTGGGCAGAGTAACCAAGGGG
CCATGCTGCAAGATAGTCTGGGCCAGCTGGAAGAAAACTTTTTGTCAAGCTCCTGCCAGCCAGG
TTATGAAGAGGAAGCTGCTGGATTGCCAGTGGATAGTGAGACTAGAGATCTAGATTCCGAATTT
GAAGACTTGGCAGGTGATGTCAGAGTACAAACAGAGTTGAAAGAGGAGACACAACCGTTGAGTC
ACAGTCCCAAACGTACTCCAACAACACTTTCTATTAAACCCCTTGGCGCTATATCCCCAGTTTT
AAATCGTAAATTAATTTCAGGAATCCACCCACCACCACAAAAACTTCCATCCAAAGAAGGAAAT
AAACCATCAACTCTAAAAACTTCAGAGGCCACAGAAGCAGCACAAGTGTCCAAACCCCAAGTAC
CCACTTTCAAACCACCTGTGCCCCCACGACCACAGGGGAGAGTGCCTCTGCCTCCCACTGACAC
CTCAGCTCAGGCAGACCCGGAAACCACAGAAAAGCCAGAGAAGGTGCTGCTCCCTCCTCCTCCT
GCAGATAAACCCGCTGAGAAGCAAGTGAAGAGTGTGGATCACGGAGAAGATGTGGCAGCAGGTA
AGCAGCCTCCAGCAAAGCAGGAAGTAGTGAAAGATGCTCCTTCAGAGAGTTCTGCTCCCACTAA
AGACCCTTCAGATGACCATCAGATGTGGGAATCGTCAGAGGTTCTGTATCGTAATAAGGTAGGA
AAGTGGTCAAGAGCCAGAGCATCTTGTGTGTTCGACATAGAAGCCTGCCACAGGTACCTGAACA
TTGCACTGTGGTGCAGGGATCCGTTCAAGTTAGGAGGTCTCATCTGTTTGGGGCATGCTAGTTT
AAAACTGGAGGAGGTGGCTTTAGGATGCCTAGCTACATCAAACATGGAATACCTTTCAAAGTTC
AGACTGGAGCCTCCTGCACCTAAGGCCATGGTCACGAGAACTGCACTGCGTAATCTGAGTATGC
AGAAGGGCTTCAATGACAAGTTTTGTTTTGGTGACATTACTATTCATTTCAAGTATTTGAAGGA
AGGAGAACCAGACCACCAGATAGTTCCTAGTGTAGAGAAAGAAAGAGAACTCCATGTGGTTGAG
GAAGTTTCTACACTCCCTAAAGAGGACCATTTTGTGGGACAGATGAGTTTGTCAGAAAATAAAC
ATAGTTTTCAAGATACTCAGTTCCAAAACCCAACTTGGTGTGATTACTGTAAGAAAAAGGTGTG
GACAAAAGCTGCTTCCCAATGTATGTTCTGTGCTTATGTCTGTCATAAAAAATGTCAGGAAAAG
TGTCTAGCTGAGACGCCTCTTTGTGGAGCGACTGAGAGGCGAGTAGACCGGACCCTGAAAAGCC
TCAGGCTGGAAGGACAGGACCCACTCTTGGGCCTTCCTCCTCGTGTGGAGATGGAAGCTAACAA
GTCAGTCAATAAAACAACAGGGTTGACAAGGCATATCATTAACACTAGCTCTCGCTTACTGAAT
CTGCGTCAAGTCTCTAAAACCCGCCTTGCTGAACCAGGAACAGATCTTGTAGAACCATCACCAA
AACACACACCCAATACGTCAGACAATGAAGGCAGTGACACAGAGGTCTGTGGTCCAAACAGTCC
TTCCAAACGAGGAAACAGTGCAGGAATAAAGTTAACGAGAAAGGAAGGAGGGCTGGATGACAGT
GTTTTTATTGCAGTTAAAGAAATTGGCCGTGATCTATACAGAGGCTTGCCCACCGAAGAGAGGA
TTCAGAAGCTAGAGTTCATGTTGGATAAGCTGCAGAATGAAATCGATCAAGAGCTGGAACACAA
CAATTCCCTCGTTAGAGAAGAAAAAGAAACAAATGATACAAGGAAGAAATCAGTTCTTTCCGCT
TCTTTGGCTAAATCAGGAGAAAGACTACAAGCTCTGACACTTCTGATGATCCACTACAAAGCAG
GCATTGAAGATATTGAAACCTTAGAAAACCTGTCCCTAGACCAGCATTCGAAAAAGATGAACAA
ATACACAGAAGACACAGAAGAAGACCTCGACAGTGAGATAAGCCAGTTGATAGACTCTCAGCCA
TTCAGCAACATCTCTGATGACTTGTTCGGCCCATCTGAGTCAGTGTAACCAACAGGCCATTTCA
GCTTTCACGTGGTTGGGGACAAGATGTATCTAAAGTGCCACGGGTACAGTCACGTTCAGTTCTC
TCATGGTGCACTTTGGCCTGTTCTGTAGTTACTTGCTTGTATGAGAAAGAAAAGGCAGTTTTCA
GCAGAAACATGACCAGCTCATCAAATTGGTTGTTTCGGGTTGTGCTTATAGCTATGAGTTTTTT
GGATTTATACTGGGAATTGGGTTTTATTAATTTATTTTTAACCTTTTCTAATTATGTAAGCTAA
CTTTGTGTTTGTGTATGTGTGATGTCTCACTGTCACTTTTTTCTTTCCTCCGGGTTTTTAATTA
GTGTTGAATAAGATCCTGTCCAGATTCCTGAAATATTCTCTTTCATTTTCATCACGGTTATAAC
AACAGATTTGTTGCATGCCTCAATTGACCACAGTAATCATTGAGGGGACAGGTTTGAGTCTTCT
CCCTTCTCTGTTTTGAGGTTTGTCAGCTGTAGTTCCTGATGCTTTTGTTAATGGGGCTTGGGGG
ACTTTTGTTTTATTTTGCTTTTGTTATTGCCAAATGTAAATGAAAGCTTACCCCACAGCTTTAA
TCTGTTATGCTTATATAGTTTAATTTTTTTACATATATTGCTTGCTTCTTATGCTTCTGTGATA
TTTTTAAAGCTTTTATGCAGTGAAAGTGTAGTAAAATTACAGTGATTAACTAGAAGAGGTTGCA
TTGAATAGAGAATAAATGCAAAGTCCAGTTGGTCAAGAATTTTGTAGAGAGGATAACAAGATTT
TATTACTGAAGAACAGTAACCAGTAGAATTTTGAAATACCTTTCAGATGTTGATGCTTTCCTTT
TAAGTGGAGGTTGTGGACACTCATAATGACTTTTCACCTTTGGTTCTCCCATAGGAGATAAAGC
ATGTGCAAGGACATTTAAAATCTCACAGGACTTATTCTGAAGATGACTGTATTCATAACTGGCT
TTGTTTGTATGATGTGGAGGGCAACTACACAGATTATGTTTACTACATCACTACTGGTGTCTTG
TGGCCTTAACGGAATGTCGGTCATTCTGAGTACTTCAGTAGTTCAGACCATCTTCATTCATTGT
AAAGAAAAGTAAAAACAGACAGTGTGCATAGTTTGCTAAAGGGAAGGCCTGTGTGCTATTGGAC
CATCTAGTGGATGCTGGTAACAAACCACCGAGACAAATAGATGAGCTCGGCCTGAATTGCTATA
TCTTAAAAGTCTAAGCTTGTTATACCTATAGAATAGAAGAGTGTCTTCCCCCTTTACAGGTAAC
TACAGGTACTACTTTAACATAAACCAACTAAATTTAAAAATATATGAAACAGCTCTTTGGCTGC
AGAAAAATGCATAGTATAATACACTGACCCAGTCTGTAGCCCAGACTCCAGCAGGAGTTTAAGG
TCAAGCTCTTTAGTGATCTGTGCAGCCATAGGCAGGTCACAAAGGGTCATGCAGCTTCCCCAGC
TCCAAAGGTACTCATTCTTCCTCACAGGACTGTTATGAGGAAAACAGGAGCATAACTGCAAAGG
CGCTTTGAACAGTAAAATGCTGTAAAAATAAGAGGTATTACTTATATGAGAAAACATTGTTGAG
TATAAAAAAAGTTATTTCAATCTTAAACTTAATAGCTAACTCTCACTCTCATTATTAAGTGAAA
TATTGGGGCGCAGACCTACCTTTGTCAGGCTTACAGCAAGGCTACATCTGTGTAACCCCACCCC
ACCCCCACTCTTACTGTTTATTTAAGCATGTTCACAACTTAAAAGAACACCACAGAGAAGGACT
TCCCACTACAAATCCCAGAAGCTAAAGTGTTCCACATTTTATATGCTTGAAACAAATGGTCTGC
CCAAAGTATAGGCATACTTCATCTTGTAAACAGTAACCTGCCATTTTGTAAGCCTGCCATTGCT
ACCCTGAAGGCGCACGGCTGTAAGTGGCTGGTGTGTTCACGGATCACGCCATGGAAGTTTTAGT
GGTGCCCAAGCATGCTCCTGCACTGATGCGTTTGAAAGAGCTATAGAAGTAATGCAAAGCTTTC
GTTCTGAGAATCTACTCATGCTTTAAGGTATTTATCTCCGTGGAACCACAATCATGGAAAGCTC
AACAGTGCTGCTGATTATGTTTGTAAAATATACCTTTGATGTAGTGCAATATTTTTCTATTGGG
AGAGACAGGAGAGGCATCACAGTTGGGAGCTCCAAATACCCTTAAGCATAGTAAGGTGTAAGGC
TTCAATTTAAAAGATTGTGTTATATTACATTACTCATGTAATCTTGCTGCCATGCTATGTTATC
AATAGCTAAAATAATAATAAAGACTACCACGAAAAATAAGAATATCTTCATTTGATGACATTTA
AAACAGGTGACTGGTTCTTCTCTGGCATTATTACCTCGTATAATTTGGCCATGCAGACAAGCTA
ACAGTCCACTTTTACTAAACAAATATGTGAAAGCATTCAGATTTTACTGTTGATTCCTTACTGT
TTGAAACAGATATATGCATTTTCTTCTACTGCTATATAGTAATAATAGATTATTACTCATTGTG
AGACCTGTCTCAGAAAAGAAAAATTAAACTATTTAAAGTGTACTCTTTTCATTGGTATTAAGTT
GAAAGACTGGGTTAGGCAAAATGAATAACATTTTAGTATTATTTTGCAATCATAATATGCTATT
TTTTTTAAATTATTTATTGTGTTGCTTTTTTTGAGACAGAATCTCTCCGGCCTCGAACTCAATA
GAGCTCTGCCTGCCTCTCTTCTGGAGTGCTGGGGTTAAAGGCATTTCCCACCATGCCTAGCTGT
ACTTACTGTATTTCTTAGCATCCGACTTTGTTCAGTAATGCTAGAACTTACAGTGTAGATACTT
TCTCATTCTAAGAACAGCCTAAAACTTTGAGAGTAAAGTCTAACTTAAAAATATTAAGCATTTT
AAACATATTTGGTTCTAATAAGACAGAGTTTAAATTTTTAAGTCCCCTAAAGTTTTGAAATTGC
TTCAATTTTTAAAGAAATGTATTACTTTGACTTTTAAATTGAAGTGATGGCTTTCTTTAGCAAA
CAAGGGTGGAAAGGGGGGTTACTTTCATCCTTTTTGATCCCTTAATGTTCCTTAAGGTCTGAGT
AAACCAGCAGGCCACCCTAATCCTGGAAACTGCCATGCATATCACATTCAAAACGATCCTTATT
TCTAGGTCTTTCAGAGCCTGTTCTGTCCTGTGGCTAAGTATTACCGTTCTCTTCATCAGACGGT
TACCTGTTCACAGCAATTAGAACAATTCATCTGAGTTAAAGTCCAGGGCAAGTCACTGTCTTTC
TACACTGATAGGGTATAACAAGTCTTATATTTCATTTAAAGGAAGCAATGGGAGGCCAAAGAGG
ACGGTTCACCCTAGCCTGAAGTGACTTGCTTGATGCCTGCAAACACAGAGAATGCTTTTTGATT
AAATATCTACAGCCA

hide sequence

RefSeq Acc Id:

XM_039110347 ⟹ XP_038966275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	268,451,360 - 268,492,923 (-)	NCBI
mRatBN7.2	1	258,465,520 - 258,506,808 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100916	(Get FASTA)	NCBI Sequence Viewer
	XP_038966275	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94558	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063181
	ENSRNOP00000063181.1
	ENSRNOP00000107980.1

RefSeq Acc Id:

NP_001100916 ⟸ NM_001107446

- UniProtKB:

D3ZXY2 (UniProtKB/TrEMBL), A6JI84 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLLLMILASAVLGSFLTLLTQFLLLYRRQPEPRADEAARAGDGFRYLKPVPGLPLREYLYGGG
AEEPAAGSSEAGASTTPTPDSPAPPTLETCYFLNATILFLFRELRDTALARRWVTKKIKVEFEE
LLQTKTAGRLLEGLSLRDVFLGDTVPYIKTIRLVRPVVASGTGEPDEPDGDALPATCPEELAFE
AEVEYNGGFHLAIDVDLVFGKSAYLFVKLSRVVGRLRFVLTRVPFTHWFFSFVEDPLIDFEVRS
QFEGRPMPQLTSIIVNQLKKIIKRKHTLPSYKIRFKPFFPYQALQGFEEDEDLIHIQQWALTEG
RLKVTLLECSRLLIFGSYEREANVHCTLELSSGVWEEKQRSSIKTVELIKGNLQSVGLTLRLVQ
STDGYAGHVIIETVAPNSPAAIADLQRGDRLIAIGGVKITSTLQVLKLIKQAGDRVLVYYQRPV
GQSNQGAMLQDSLGQLEENFLSSSCQPGYEEEAAGLPVDSETRDLDSEFEDLAGDVRVQTELKE
ETQPLSHSPKRTPTTLSIKPLGAISPVLNRKLISGIHPPPQKLPSKEGNKPSTLKTSEATEAAQ
VSKPQVPTFKPPVPPRPQGRVPLPPTDTSAQADPETTEKPEKVLLPPPPADKPAEKQVKSVDHG
EDVAAGKQPPAKQEVVKDAPSESSAPTKDPSDDHQMWESSEVLYRNKVGKWSRARASCVFDIEA
CHRYLNIALWCRDPFKLGGLICLGHASLKLEEVALGCLATSNMEYLSKFRLEPPAPKAMVTRTA
LRNLSMQKGFNDKFCFGDITIHFKYLKEGEPDHQIVPSVEKERELHVVEEVSTLPKEDHFVGQM
SLSENKHSFQDTQFQNPTWCDYCKKKVWTKAASQCMFCAYVCHKKCQEKCLAETPLCGATERRV
DRTLKSLRLEGQDPLLGLPPRVEMEANKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLAEPGTD
LVEPSPKHTPNTSDNEGSDTEVCGPNSPSKRGNSAGIKLTRKEGGLDDSVFIAVKEIGRDLYRG
LPTEERIQKLEFMLDKLQNEIDQELEHNNSLVREEKETNDTRKKSVLSASLAKSGERLQALTLL
MIHYKAGIEDIETLENLSLDQHSKKMNKYTEDTEEDLDSEISQLIDSQPFSNISDDLFGPSESV

hide sequence

Ensembl Acc Id:

ENSRNOP00000063181 ⟸ ENSRNOT00000068082

RefSeq Acc Id:	XP_038966275 ⟸ XM_039110347
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000107980 ⟸ ENSRNOT00000172830

Protein Domains

PDZ Phorbol-ester/DAG-type SMP-LTD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZXY2-F1-model_v2	AlphaFold	D3ZXY2	1-1152	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691014

Promoter ID:

EPDNEW_R1539

Type:

initiation region

Name:

Pdzd8_1

Description:

PDZ domain containing 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	280,515,639 - 280,515,699	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308622	AgrOrtholog
BioCyc Gene	G2FUF-55253	BioCyc
Ensembl Genes	ENSRNOG00000009460	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068082	ENTREZGENE
	ENSRNOT00000068082.3	UniProtKB/TrEMBL
	ENSRNOT00000172830.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	3.30.60.20	UniProtKB/TrEMBL
InterPro	C1-like_sf	UniProtKB/TrEMBL
	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_6	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	PDZD8	UniProtKB/TrEMBL
	Prot_Kinase_C-like_PE/DAG-bd	UniProtKB/TrEMBL
	SMP_LBD	UniProtKB/TrEMBL
KEGG Report	rno:308000	UniProtKB/TrEMBL
NCBI Gene	308000	ENTREZGENE
PANTHER	PDZ DOMAIN-CONTAINING PROTEIN 8	UniProtKB/TrEMBL
	PTHR21519	UniProtKB/TrEMBL
Pfam	C1_1	UniProtKB/TrEMBL
	PDZ_6	UniProtKB/TrEMBL
PhenoGen	Pdzd8	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
	SMP	UniProtKB/TrEMBL
	ZF_DAG_PE_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009460	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
	SM00109	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
	SSF57889	UniProtKB/TrEMBL
UniProt	A0ABK0LS92_RAT	UniProtKB/TrEMBL
	A6JI84	ENTREZGENE, UniProtKB/TrEMBL
	D3ZXY2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Pdzd8	PDZ domain containing 8	Pdzk8_predicted	PDZ domain containing 8 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Pdzk8_predicted	PDZ domain containing 8 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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