Pdzd8 (PDZ domain containing 8) - Rat Genome Database

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Gene: Pdzd8 (PDZ domain containing 8) Heterocephalus glaber
Analyze
Symbol: Pdzd8
Name: PDZ domain containing 8
RGD ID: 18919139
Description: ENCODES a protein that exhibits lipid binding (inferred); metal ion binding (inferred); INVOLVED IN cytoskeleton organization (ortholog); regulation of cell morphogenesis (ortholog); ASSOCIATED WITH Intellectual Developmental Disorder with Autism and Dysmorphic Facies (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); mitochondria-associated endoplasmic reticulum membrane contact site (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PDZ domain-containing protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473729,242,196 - 29,353,336 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473729,242,198 - 29,353,336 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pdzd8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473729,242,196 - 29,353,336 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473729,242,198 - 29,353,336 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PDZD8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810117,277,274 - 117,375,440 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10117,277,274 - 117,375,440 (-)EnsemblGRCh38hg38GRCh38
GRCh3710119,036,785 - 119,134,951 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610119,032,596 - 119,124,927 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410119,032,595 - 119,124,927NCBI
Celera10112,772,703 - 112,865,000 (-)NCBICelera
Cytogenetic Map10q25.3-q26.11NCBI
HuRef10112,670,274 - 112,763,195 (-)NCBIHuRef
CHM1_110119,326,798 - 119,419,104 (-)NCBICHM1_1
T2T-CHM13v2.010118,171,771 - 118,269,881 (-)NCBIT2T-CHM13v2.0
Pdzd8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391959,284,516 - 59,334,212 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1959,285,610 - 59,334,212 (-)EnsemblGRCm39 Ensembl
GRCm381959,296,084 - 59,345,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1959,297,178 - 59,345,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv371959,370,574 - 59,420,270 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361959,351,678 - 59,399,030 (-)NCBIMGSCv36mm8
Celera1961,496,563 - 61,545,435 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1954.65NCBI
Pdzd8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81268,435,304 - 268,492,923 (-)NCBIGRCr8
mRatBN7.21258,449,218 - 258,506,828 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1258,449,218 - 258,506,828 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1266,654,746 - 266,712,507 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01273,360,771 - 273,418,533 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01266,001,930 - 266,059,796 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01280,458,041 - 280,515,650 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1280,458,041 - 280,515,650 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01287,818,525 - 287,876,134 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41265,825,444 - 265,883,170 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11266,039,911 - 266,094,082 (-)NCBI
Celera1254,103,043 - 254,160,651 (-)NCBICelera
Cytogenetic Map1q55NCBI
Pdzd8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,980,447 - 22,060,826 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543121,980,447 - 22,060,826 (-)NCBIChiLan1.0ChiLan1.0
PDZD8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28129,153,111 - 129,245,780 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110129,158,120 - 129,251,103 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010113,862,457 - 113,958,281 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110117,288,123 - 117,385,317 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10117,293,877 - 117,385,317 (-)Ensemblpanpan1.1panPan2
PDZD8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,768,182 - 27,853,958 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,772,651 - 27,853,769 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2827,902,798 - 27,997,253 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02828,289,062 - 28,383,545 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2828,302,187 - 28,383,513 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,861,675 - 27,945,273 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,863,751 - 27,958,752 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02828,058,685 - 28,153,690 (-)NCBIUU_Cfam_GSD_1.0
Pdzd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721318,370,785 - 18,451,565 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364867,114,383 - 7,190,572 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364867,109,733 - 7,190,518 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZD8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14127,395,823 - 127,502,400 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114127,395,842 - 127,502,421 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214138,800,410 - 138,903,648 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDZD8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19110,081,713 - 110,184,348 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9110,082,680 - 110,184,260 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604871,336,767 - 71,441,109 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017028   ⟹   ENSHGLP00000016857
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473729,242,196 - 29,353,336 (+)Ensembl
RefSeq Acc Id: XM_004838847   ⟹   XP_004838904
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473729,242,198 - 29,353,336 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004838904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016857
Reference Protein Sequences
RefSeq Acc Id: XP_004838904   ⟸   XM_004838847
- UniProtKB: G5BVW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016857   ⟸   ENSHGLT00000017028


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012055 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017028 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
InterPro C1-like_sf UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  PDZD8 UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  SMP_LBD UniProtKB/TrEMBL
NCBI Gene Pdzd8 ENTREZGENE
PANTHER PDZ DOMAIN-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
  PDZ DOMAIN-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
  SMP UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
Superfamily-SCOP Cysteine-rich domain UniProtKB/TrEMBL
  PDZ domain-like UniProtKB/TrEMBL
UniProt G5BVW1 ENTREZGENE, UniProtKB/TrEMBL