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Gene: Zscan25 (zinc finger and SCAN domain containing 25) Rattus norvegicus

Analyze

Symbol:

Zscan25

Name:

zinc finger and SCAN domain containing 25

RGD ID:

1308619

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZSCAN25 (zinc finger and SCAN domain containing 25); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC103693617; LOC363872; Zfp498; zinc finger and SCAN domain-containing protein 25; zinc finger and SCAN domain-containing protein 25 pseudogene; zinc finger protein 498; Znf498

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	14,441,458 - 14,451,919 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	14,441,458 - 14,451,985 (-)	Ensembl				GRCr8
mRatBN7.2	12	9,327,347 - 9,338,206 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	9,326,404 - 9,338,221 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	10,133,215 - 10,143,689 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,756,408 - 10,766,883 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,779,838 - 9,790,313 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	11,774,920 - 11,785,530 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	11,774,788 - 11,785,493 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	13,837,227 - 13,847,687 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	9,640,243 - 9,650,703 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	11,133,000 - 11,143,460 (-)	NCBI		Celera
RGSC_v3.1	12	9,670,239 - 9,678,288 (-)	NCBI
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acrylamide (EXP,ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

CGP 52608 (ISO)

dexamethasone (EXP)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

iron dichloride (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

paracetamol (EXP)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (EXP)

sunitinib (ISO)

testosterone (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zscan25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	14,441,458 - 14,451,919 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	14,441,458 - 14,451,985 (-)	Ensembl				GRCr8
mRatBN7.2	12	9,327,347 - 9,338,206 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	9,326,404 - 9,338,221 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	10,133,215 - 10,143,689 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,756,408 - 10,766,883 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,779,838 - 9,790,313 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	11,774,920 - 11,785,530 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	11,774,788 - 11,785,493 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	13,837,227 - 13,847,687 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	9,640,243 - 9,650,703 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	11,133,000 - 11,143,460 (-)	NCBI		Celera
RGSC_v3.1	12	9,670,239 - 9,678,288 (-)	NCBI
Cytogenetic Map	12	p11	NCBI

ZSCAN25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	99,616,946 - 99,738,035 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	99,616,623 - 99,632,408 (+)	Ensembl			hg38	GRCh38
GRCh37	7	99,214,569 - 99,270,165 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	99,052,507 - 99,067,976 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	98,859,221 - 98,873,178	NCBI
Celera	7	93,948,800 - 93,964,259 (+)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	93,850,935 - 93,866,394 (+)	NCBI		HuRef
CHM1_1	7	99,144,665 - 99,160,124 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	100,851,926 - 100,993,657 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	98,574,366 - 98,589,825 (+)	NCBI

Zscan25
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	145,217,261 - 145,229,050 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	145,217,310 - 145,228,088 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	145,280,451 - 145,292,240 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	145,280,500 - 145,291,278 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	146,044,212 - 146,052,338 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	145,534,008 - 145,544,996 (+)	NCBI		MGSCv36	mm8
Celera	5	142,278,556 - 142,286,446 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	85.17	NCBI

Zscan25
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	15,271,122 - 15,282,042 (+)	Ensembl
ChiLan1.0	NW_004955460	15,271,577 - 15,280,712 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZSCAN25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	117,472,146 - 117,591,366 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	165,737,263 - 165,856,029 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	91,589,706 - 91,776,856 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	105,091,830 - 105,147,752 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	105,094,741 - 105,107,657 (+)	Ensembl			panPan2	panpan1.1

ZSCAN25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	9,930,569 - 9,942,371 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	9,931,501 - 9,939,584 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	11,554,468 - 11,568,247 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	9,928,554 - 9,942,341 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	9,930,578 - 9,942,289 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	9,791,955 - 9,805,424 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	9,776,585 - 9,790,373 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	10,010,971 - 10,024,762 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zscan25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	137,862,194 - 138,054,749 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	1,891,230 - 1,903,060 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	1,890,646 - 1,901,501 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZSCAN25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	6,569,304 - 6,579,150 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	6,563,495 - 6,583,370 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZSCAN25
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	13,539,095 - 13,551,772 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	13,538,395 - 13,550,889 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666070	2,758,401 - 2,851,590 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zscan25
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	33,053,773 - 33,073,674 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	33,053,712 - 33,070,751 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zscan25
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	8,017,304 - 8,028,019 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zscan25
30 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	88
Interacting mature miRNAs:	95
Transcripts:	ENSRNOT00000039687
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1357337	Gluco3	Glucose level QTL 3		0.0004	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	12	1	16966671	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	11869600	16966542	Rat
61334	Gluco17	Glucose level QTL 17	6.3		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	12	1	16966671	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
724526	Uae3	Urinary albumin excretion QTL 3	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	12	1	15486827	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

BE116312

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	14,440,238 - 14,440,397 (+)	Marker Load Pipeline
mRatBN7.2	12	9,326,456 - 9,326,615 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	11,773,811 - 11,773,969	NCBI	Rnor6.0
Rnor_5.0	12	13,836,736 - 13,836,894	UniSTS	Rnor5.0
RGSC_v3.4	12	9,637,704 - 9,637,862	UniSTS	RGSC3.4
Celera	12	11,131,826 - 11,131,984	UniSTS
RH 3.4 Map	12	116.9	UniSTS
Cytogenetic Map	12	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	160	91	90	59	92	59	6	354	191	9	139	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039687 ⟹ ENSRNOP00000038864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	14,441,458 - 14,451,985 (-)	Ensembl
mRatBN7.2 Ensembl	12	9,326,404 - 9,338,221 (-)	Ensembl
Rnor_6.0 Ensembl	12	11,774,788 - 11,785,493 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075888 ⟹ ENSRNOP00000067930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	11,775,090 - 11,783,232 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076796 ⟹ ENSRNOP00000068199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	11,775,219 - 11,780,078 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076827 ⟹ ENSRNOP00000068035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	11,775,029 - 11,783,232 (-)	Ensembl

RefSeq Acc Id:

NM_001108851 ⟹ NP_001102321

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	14,441,458 - 14,451,919 (-)	NCBI
mRatBN7.2	12	9,327,674 - 9,338,137 (-)	NCBI
Rnor_6.0	12	11,775,070 - 11,785,530 (-)	NCBI
Rnor_5.0	12	13,837,227 - 13,847,687 (-)	NCBI
RGSC_v3.4	12	9,640,243 - 9,650,703 (-)	RGD
Celera	12	11,133,000 - 11,143,460 (-)	RGD

Sequence:

show sequence

CGGCCGGGTCCGGGCGGGGCGGGGCTGGACGGAGCAGGCAGCAGGTCGGTGGGGCAGCAGCGGC
TGCGAAGGTCGTTATCTCCTCGCACAGCCGTGATCTTAGACGGGTCACCCCTGTTGTTGTCCTC
AGTCGTGCTGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCCGAAGATCCTCAGCAGCA
GATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCT
AGTCCTGAGGCTTTTCGGCTAAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGG
AAGCCCTCAGGGAGCTCCAAGAGCTGTGTCGACGGTGGCTGAGGCCTGAGCTGCACACCAAAGA
GCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGCTCTACACC
TGGATCCGGGAACACAGCCCAGACAGTGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGG
GGAGCACGGAGGCCAAGGCGGTTCCATGCCATGCCCAGGGAGAACAGCTGGTCACAGCCCTGGG
CGGAGGATCTTGGCAATCAGGTATCCACTTGGGGCCAGTAGAAGTCAAGCCTGAGTGGGGGATC
CCTCAGGGTGAAGGAGTTCAGAGCTTAGGCCCAAGCACCGCAGAACAGCTGAGCCAGGGCCCTG
GAGATGGGACACAGGCCTTCCAGGAGCAAGCATTGCCCATTCTTCACGTGGGTTCAGGGCTTCC
CACTGTGAGTGCCAGAGACCAAGAGATTGCAGCTGGGTTCCTTGCAGCCACGTCCCAGGGTCTG
GGGCCATTTAAAGACATGACTTTGGGTTTCCCTGAGGAGGAGTGGAGGCACGTAGCCCCGGCAC
AGATTGACTGCTTTGGGGAATATGTGGACTCTCAGGACTGTGGCGCCCCTCCAGGTGCTGGGAG
CAAGGAGAAGGAGGCTAAGCCCCAGCAAGAAGACCTGAAGAGAGCATTTGTTGGGTTGACTTCC
GATGGGTTTGGAGAAGCTGCCATCCAGGTTCCTGTGCCAGGGGGCACCTGTGAGCAGGAGCCTG
GGGGCTCTGGGACCAGTGTGCCTGGGCTTCCTGCTCCTCAGCCTGGCGTCCCCCTGCCTGAGGC
CCTCAGCGCCCACAGTTCTTTCTGGAAGCCATTCCAGTGCCCTGAGTGTGGGAAAGGCTTCAGT
CGGAGCTCCAACCTTGTCAGGCACCAGCGGACCCACGAGGAAGAGAAAGCCTTTGGCTGTGTGG
AGTGCGGGAAAGGTTTCACCTTAAGGGAATACCTCACCAAGCATCAGAGGACCCACCTGGGCAA
GAGGCCCTACGTGTGCGGAGAGTGCTGGAAGACCTTCAGTCAGAGGCATCACCTGGAGGTGCAC
CAGCGCAGCCACACCGGGGAGAAGCCCTACAAGTGTGCAGACTGCTGGAAGGGCTTCAGCCGGA
GGCAGCATTTGCTGGTGCACCGCAGGACACACACCGGGGAGAAGCCCTACACCTGCGAGTGTGG
CAAGAGCTTCAGCAGGAACGCCAACCTGGCCGTGCACCGTCGCGCGCACACAGGGGAGAAGCCC
TACGGCTGCCAGGTGTGCGGCAAGCGCTTCAGCAAGGGGGAGCGACTGGTGCGGCACCAGAGGA
TCCACACAGGCGAGAAGCCCTATCACTGCCCAGCCTGCGGCCGCAGCTTCAACCAGAGGTCCAT
CCTTAACCGTCATCAGAAGACCCAGCATCGCCAGGAGCCTCCAGTGCAGTGAGCCTACCAAGGG
AGCAGCTCTGCCGTAGGAGCGACTGTGTTGCACCGAGGCTCTGGGCAGTGCCCAGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102321	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89597	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038864
	ENSRNOP00000038864.5

RefSeq Acc Id:

NP_001102321 ⟸ NM_001108851

- UniProtKB:

A6K1D9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLKERLEMAEDPQQQMGAPVVKLEKELPWGRGGEDSSPEAFRLRFRQFRYQEAAGPQEALRELQ
ELCRRWLRPELHTKEQILELLVLEQFLTILPRELYTWIREHSPDSGKALVAMVEELMGSTEAKA
VPCHAQGEQLVTALGGGSWQSGIHLGPVEVKPEWGIPQGEGVQSLGPSTAEQLSQGPGDGTQAF
QEQALPILHVGSGLPTVSARDQEIAAGFLAATSQGLGPFKDMTLGFPEEEWRHVAPAQIDCFGE
YVDSQDCGAPPGAGSKEKEAKPQQEDLKRAFVGLTSDGFGEAAIQVPVPGGTCEQEPGGSGTSV
PGLPAPQPGVPLPEALSAHSSFWKPFQCPECGKGFSRSSNLVRHQRTHEEEKAFGCVECGKGFT
LREYLTKHQRTHLGKRPYVCGECWKTFSQRHHLEVHQRSHTGEKPYKCADCWKGFSRRQHLLVH
RRTHTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRFSKGERLVRHQRIHTGEKP
YHCPACGRSFNQRSILNRHQKTQHRQEPPVQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000067930 ⟸ ENSRNOT00000075888

Ensembl Acc Id:

ENSRNOP00000068035 ⟸ ENSRNOT00000076827

Ensembl Acc Id:

ENSRNOP00000038864 ⟸ ENSRNOT00000039687

Ensembl Acc Id:

ENSRNOP00000068199 ⟸ ENSRNOT00000076796

Protein Domains

C2H2-type SCAN box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A6L5-F1-model_v2	AlphaFold	D4A6L5	1-543	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698421

Promoter ID:

EPDNEW_R8946

Type:

multiple initiation site

Name:

Zscan25_1

Description:

zinc finger and SCAN domain containing 25

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	11,785,572 - 11,785,632	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308619	AgrOrtholog
BioCyc Gene	G2FUF-20064	BioCyc
Ensembl Genes	ENSRNOG00000042213	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039687	ENTREZGENE
	ENSRNOT00000039687.8	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	SCAN_sf	UniProtKB/TrEMBL
	Tscrpt_reg_SCAN	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:363872	UniProtKB/TrEMBL
NCBI Gene	363872	ENTREZGENE
PANTHER	FI01424P	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zscan25	PhenoGen
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000042213	RatGTEx
SMART	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A6K1D9	ENTREZGENE, UniProtKB/TrEMBL
	D4A6L5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Zscan25	zinc finger and SCAN domain containing 25	LOC103693617	zinc finger and SCAN domain-containing protein 25 pseudogene	Data merged from RGD:9342065	737654	PROVISIONAL
2017-06-28	Zscan25	zinc finger and SCAN domain containing 25	Zfp498	zinc finger protein 498	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-08-25	LOC103693617	zinc finger and SCAN domain-containing protein 25 pseudogene			Symbol and Name status set to provisional	70820	PROVISIONAL
2011-07-19	Zfp498	zinc finger protein 498	Znf498	zinc finger protein 498	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Znf498	zinc finger protein 498	Znf498_predicted	zinc finger protein 498 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Znf498_predicted	zinc finger protein 498 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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