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Gene: Sppl2b (signal peptide peptidase-like 2B) Rattus norvegicus

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Symbol:

Sppl2b

Name:

signal peptide peptidase-like 2B

RGD ID:

1308556

Description:

Predicted to enable aspartic endopeptidase activity, intramembrane cleaving and protein homodimerization activity. Predicted to be involved in membrane protein ectodomain proteolysis; membrane protein intracellular domain proteolysis; and regulation of immune response. Predicted to be located in endosome membrane and plasma membrane. Predicted to be active in bounding membrane of organelle and endoplasmic reticulum membrane. Orthologous to human SPPL2B (signal peptide peptidase like 2B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362828; presenilin-like protein 1; RGD1308556; similar to SPPL2b; SPP-like 2B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPPL2B (signal peptide peptidase like 2B)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Sppl2b (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sppl2b (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPPL2B (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPPL2B (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sppl2b (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPPL2B (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPPL2B (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sppl2b (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sppl2b (signal peptide peptidase like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SPPL2C (signal peptide peptidase like 2C)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Sppl2b (signal peptide peptidase like 2B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SPPL2B (signal peptide peptidase like 2B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sppl2 (signal peptide peptidase-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	imp-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sppl2b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sppl2b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	9,494,593 - 9,507,278 (-)	Ensembl				GRCr8
mRatBN7.2	7	8,843,918 - 8,856,642 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,843,918 - 8,856,608 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	11,727,769 - 11,740,555 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,603,273 - 13,616,059 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,469,804 - 11,482,591 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,712,187 - 11,724,915 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,712,188 - 11,724,843 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	11,879,707 - 11,892,620 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	10,354,554 - 10,367,210 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	7,028,038 - 7,040,694 (-)	NCBI		Celera
RGSC_v3.1	7	10,354,554 - 10,367,210 (-)	NCBI
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlormequat chloride (EXP)

doxorubicin (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methidathion (ISO)

pentanal (ISO)

sodium arsenite (ISO)

tetrachloroethene (ISO)

thimerosal (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

membrane protein ectodomain proteolysis (IEA,ISO,ISS)

membrane protein intracellular domain proteolysis (IEA,ISO,ISS)

membrane protein proteolysis (IBA,IEA,ISO,ISS)

proteolysis (IEA)

regulation of immune response (IEA,ISO,ISS)

Cellular Component

cytoplasmic side of endoplasmic reticulum membrane (IBA,IEA,ISO,ISS)

endomembrane system (IEA)

endosome (IEA)

endosome membrane (IEA,ISO,ISS)

Golgi membrane (IEA)

Golgi-associated vesicle membrane (IBA,IEA,ISO,ISS)

lumenal side of endoplasmic reticulum membrane (IBA,IEA,ISO,ISS)

lysosomal membrane (IBA,IEA,ISO,ISS)

membrane (IEA,ISO,ISS)

organelle membrane (IEA)

plasma membrane (IEA,ISO,ISS)

Molecular Function

aspartic endopeptidase activity, intramembrane cleaving (IBA,IEA,ISO,ISS)

hydrolase activity (IEA)

peptidase activity (IEA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:2313285	PMID:15385547	PMID:15489334	PMID:15998642	PMID:16829951	PMID:16829952	PMID:16873890	PMID:17965014	PMID:19114711	PMID:21896273	PMID:22194595

Genomics

Comparative Map Data

Sppl2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	9,494,593 - 9,507,278 (-)	Ensembl				GRCr8
mRatBN7.2	7	8,843,918 - 8,856,642 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,843,918 - 8,856,608 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	11,727,769 - 11,740,555 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,603,273 - 13,616,059 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,469,804 - 11,482,591 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,712,187 - 11,724,915 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,712,188 - 11,724,843 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	11,879,707 - 11,892,620 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	10,354,554 - 10,367,210 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	7,028,038 - 7,040,694 (-)	NCBI		Celera
RGSC_v3.1	7	10,354,554 - 10,367,210 (-)	NCBI
Cytogenetic Map	7	q11	NCBI

SPPL2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	2,328,684 - 2,355,095 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	2,328,613 - 2,355,095 (+)	Ensembl			hg38	GRCh38
GRCh37	19	2,328,683 - 2,355,093 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	2,279,629 - 2,306,100 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	2,262,722 - 2,289,416 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	2,099,320 - 2,126,087 (+)	NCBI		HuRef
CHM1_1	19	2,328,242 - 2,354,745 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	2,302,357 - 2,328,755 (+)	NCBI		T2T-CHM13v2.0

Sppl2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,691,067 - 80,704,542 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	80,691,109 - 80,704,542 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	80,855,242 - 80,868,708 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	80,855,275 - 80,868,708 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	80,318,020 - 80,331,453 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,258,386 - 80,271,834 (+)	NCBI		MGSCv36	mm8
Celera	10	81,874,073 - 81,887,506 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Sppl2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,818,337 - 5,829,889 (-)	Ensembl
ChiLan1.0	NW_004955495	5,816,979 - 5,829,938 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPPL2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	6,711,728 - 6,736,722 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	5,941,082 - 5,968,189 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	1,337,570 - 1,355,755 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	2,309,360 - 2,331,951 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	2,309,360 - 2,331,951 (+)	Ensembl			panPan2	panpan1.1

SPPL2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	56,714,306 - 56,730,388 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	56,712,390 - 56,757,938 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	56,509,908 - 56,525,995 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	57,447,711 - 57,463,802 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	57,447,720 - 57,463,752 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	56,499,796 - 56,515,881 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	56,985,051 - 57,001,127 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	57,185,354 - 57,201,441 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sppl2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	216,426,113 - 216,435,356 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	1,399,085 - 1,408,783 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	1,399,125 - 1,408,676 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPPL2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	76,230,061 - 76,247,051 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	76,230,060 - 76,247,067 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	76,781,961 - 76,798,979 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPPL2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	2,121,568 - 2,142,746 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	2,121,634 - 2,144,682 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666081	6,566,507 - 6,588,105 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sppl2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	6,562,426 - 6,576,609 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624828	6,564,127 - 6,576,663 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sppl2b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	154,017,770 - 154,030,592 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sppl2b
61 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	229
Count of miRNA genes:	150
Interacting mature miRNAs:	180
Transcripts:	ENSRNOT00000043162
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

RH134584

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	8,844,009 - 8,844,191 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,712,279 - 11,712,460	NCBI	Rnor6.0
Rnor_5.0	7	11,879,799 - 11,879,980	UniSTS	Rnor5.0
RGSC_v3.4	7	10,354,646 - 10,354,827	UniSTS	RGSC3.4
Celera	7	7,028,130 - 7,028,311	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC103000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000084144 ⟹ ENSRNOP00000074120

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	9,494,593 - 9,507,278 (-)	Ensembl
mRatBN7.2 Ensembl	7	8,843,918 - 8,856,608 (-)	Ensembl
Rnor_6.0 Ensembl	7	11,712,188 - 11,724,843 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097476 ⟹ ENSRNOP00000089491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	9,494,593 - 9,507,278 (-)	Ensembl
mRatBN7.2 Ensembl	7	8,843,920 - 8,856,586 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100592 ⟹ ENSRNOP00000087622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,844,616 - 8,856,591 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109298 ⟹ ENSRNOP00000081849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	9,494,593 - 9,502,272 (-)	Ensembl
mRatBN7.2 Ensembl	7	8,843,918 - 8,851,660 (-)	Ensembl

RefSeq Acc Id:

NM_001014200 ⟹ NP_001014222

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,278 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,603 (-)	NCBI
Rnor_6.0	7	11,712,187 - 11,724,843 (-)	NCBI
Rnor_5.0	7	11,879,707 - 11,892,620 (-)	NCBI
RGSC_v3.4	7	10,354,554 - 10,367,210 (-)	RGD
Celera	7	7,028,038 - 7,040,694 (-)	RGD

Sequence:

show sequence

GACCGGCGGACATGGCGGCGGCGCGGCTGGCCGCATCCCTGCTGCTACTCGCGGCCCAGGTGGC
CTGTGAGTTCGGTGTACTGCGAGTTGTGCCCCAAAGCGGTGGGACCCGGGGCAGGGACTACTGC
ATCCTTTACAACCCACAGTGGGCCCACTTGCCTCATGACCTCAACAAAGTGTCTCTTCTGAAGC
TTCGAGACTTGAGCACGACTCAGCTCTGTTCCCACCTCGATGTTCCTGTAGAAGACTTCACCAA
CCAGATCGCACTGGTGGCTCGGGGCAACTGTACCTTCTATGAGAAAGTGCGGCTGGCCCAGGGC
AGTGGGGCACATGGGCTGCTGATAGTCAGCAAGGAGAGACTGGTCCCTCCAAGAGGCAACAAGA
CACAGTATGAGGAGATAAGCATCCCTGTGGCCCTGCTAAGCCACAGGGACCTTCAAGACATCTT
CAGGCGCTTTGGCCACGAGGTAATGGTAGCCCTGTATGCTCCGAGCGAGCCAGTGATGGACTAC
AACATGGTCATCATCTTCATCATGGCCGTGGGCACCGTCGCCCTTGGTGGCTACTGGGCTGGCA
GTCATGATGTGAAGAAGTACATGAAGCATAAGCGAGACGACGTCCCTGAGAAGCAGGAGGATGA
GGCGGTGGACGTGACGCCGGTCATGATCTGCGTGTTTGTTGTCATGTGCTGCTTCATGCTTGTG
CTCCTCTACTACTTCTATGACCGCTTGGTCTACGTGATCATTGGGATCTTCTGCCTGGCCTCCT
CTACCGGCCTCTACAGCTGCCTGGCACCCTGTGTGCGCAAGCTGCCCTTCTGCACGTGCAGGGT
CCCCGACAACAACCTGCCGTACTTCCACAAGCGTCCACAGGCCCGCATGCTGCTGCTGGCCCTC
TTCTGTGTCACTGTCTCCGTGGTGTGGGGTGTCTTCCGTAATGAGGACCAGTGGGCATGGGTCC
TGCAGGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAGGACCATTCGCCTGCCCACCTT
CAAGGCCTGCACACTGCTGCTGCTGGTGCTCTTCGTCTACGACATCTTCTTCGTCTTCATCACC
CCCTACCTGACCAAGAGCGGCAACAGCATCATGGTGGAGGTGGCCACTGGGCCCTCGAACTCAT
CCACCCATGAGAAGCTGCCCATGGTGCTGAAGGTGCCCAGGCTGAACACCTCGCCTCTCTCCCT
GTGTGACCGGCCCTTCTCCCTTCTGGGCTTTGGAGACATCTTGGTGCCAGGGCTGCTGGTGGCC
TACTGCCACAGGTTTGATATCCAGGTGCAGTCCTCCAGGATTTACTTTGTGGCCTGCACCATTG
CCTATGGCCTGGGCCTCCTGGTGACCTTCGTGGCTCTCGTCCTCATGCGACATGGCCAGCCTGC
ACTCCTCTACTTGGTCCCCTGCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGCGCCGGGAG
ATGGGCGCCTTCTGGACGGGCAGCGGTTTTGCGGATGCACCTCAGACCCCGTGGGCTGCACCCC
AGGGACCTGTGCCTCCGAAGGATGTGGATGCCTCTCTCTCGGAGCAGCCTCGGGGTGAAGAGCT
GGCCCAGAGCCCCCTGGCCACTGAGGAGGCAGGAGCCACAGACCCTGCCAAGGATCCTGACAGC
CCTGTGGCCGGTCCCCTCAGCCCCTCAAATGGGGACCAAGTCCAGCCTATACCTGTGGTGACCC
CAGGGACCTCGGCCTAGGAAGAGGCAATGTGAGAGCTGGGCCCTCGCAGCCTTCCATGCCACAC
AGATGCCGGCCACCTGGGACCTGCAGGGGACAGGGACAGCTGCCACCCACCAGAGTGACAGACC
TGCGCTATGTCCCTCCAACATGGTGCTCAGCCCTCTGAGGCCTCAAGTCCGTACTCCCTCCAGC
TGCACCCCAGCGACCAGCTCTGCTTCGCACCGGGCCGTGAGCTTCGCCTGCTGCCCACTCCATG
CAAGGCCATGGCTGCCGTTGGTGCTTTGCTGATGCTCGCCCTGCGGGTGACCCATGACCGCTCC
TCCCTCCATAGGATGGGGCTCTCTGGGGCCAGAGCAACAACCCCATGGAGCAGGCTCCTGTGCT
GGGAGCAGCCTTGAGGGGCCTAGATAGGGGCACCCTGCCCAAGGGCCTGGGCTTATGCAAGGGG
ACCAGACCCCTTCAGGAGAGTCCGAGCCGAGATGGAGTTGAGGTTGCTGGTCACTGCTGCAAGC
CAGCAAACAGCGCCAGCTCCAGGTTCTGCAGCCGAGTAGGAGTTGGCCAGGTGTAGATGGCCAC
GTCCCCAGCAAATCGATCAGCCCAGGTGTGTGAGTCTTCCATGCAGGGGCCACTGCCCTCTGCC
CCAGCAGTGGCTTCTGGACTGGCGTCTGTCCTCTACCTCACCAACCAGGCTCTGGACTCCAGGA
CAGACCTGCCTGCAGGAGCCCTCCACACATGCTGCATGTCACTGAGGCTGAAGCCAAGGTCCCC
ACAGGCTGTGACCGATCGGGAGCCATGGCCACCCACACTTGCATGGAAAAGGGTGTCTGTTACA
GGCTGACAGGCAGTGACAGCTGGGTGGTCCCCCTAGAGCTCTGGGGGGTGGTAGGGGAGGACTC
CCTAGGCACCCAGTCTAACCAGAACTGAGGGGCAGAGGAGTGCAGGCCCAGCCACCTGCTTCTG
CCATTGGACTGAGCCATTTTGTACTGGGTGTCCAAGCAGTCCTGCTCCTCTGAGTGGTGGAGGT
GCTCTGCGGGGTGCCCGAGGGCCCTGGCTTTTGGTTGTCAGGGGATTAAATACCTTTTCATACT
CACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

NM_001401073 ⟹ NP_001388002

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,278 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,603 (-)	NCBI

RefSeq Acc Id:

NM_001401074 ⟹ NP_001388003

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,278 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,603 (-)	NCBI

RefSeq Acc Id:

XM_006240948 ⟹ XP_006241010

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,642 (-)	NCBI
Rnor_6.0	7	11,712,187 - 11,724,911 (-)	NCBI
Rnor_5.0	7	11,879,707 - 11,892,620 (-)	NCBI

Sequence:

show sequence

CTCGGCGCATGCGCGTCGTGGGGTCCCGAAGGCGTTGCCAGGAAACCTTCCGCCTAGAACTGCG
GTGGGACCGGCGGACATGGCGGCGGCGCGGCTGGCCGCATCCCTGCTGCTACTCGCGGCCCAGG
TGGCCTGTGAGTTCGGTGTACTGCGAGTTGTGCCCCAAAGCGGTGGGACCCGGGGCAGGGACTA
CTGCATCCTTTACAACCCACAGTGGGCCCACTTGCCTCATGACCTCAACAAAGTGTCTCTTCTG
AAGCTTCGAGACTTGAGCACGACTCAGCTCTGTTCCCACCTCGATGTTCCTGTAGAAGACTTCA
CCAACCAGATCGCACTGGTGGCTCGGGGCAACTGTACCTTCTATGAGAAAGTGCGGCTGGCCCA
GGGCAGTGGGGCACATGGGCTGCTGATAGTCAGCAAGGAGAGACTGGTCCCTCCAAGAGGCAAC
AAGACACAGTATGAGGAGATAAGCATCCCTGTGGCCCTGCTAAGCCACAGGGACCTTCAAGACA
TCTTCAGGCGCTTTGGCCACGAGGTAATGGTAGCCCTGTATGCTCCGAGCGAGCCAGTGATGGA
CTACAACATGGTCATCATCTTCATCATGGCCGTGGGCACCGTCGCCCTTGGTGGCTACTGGGCT
GGCAGTCATGATGTGAAGAAGTACATGAAGCATAAGCGAGACGACGTCCCTGAGAAGCAGGAGG
ATGAGGCGGTGGACGTGACGCCGGTCATGATCTGCGTGTTTGTTGTCATGTGCTGCTTCATGCT
TGTGCTCCTCTACTACTTCTATGACCGCTTGGTCTACGTGATCATTGGGATCTTCTGCCTGGCC
TCCTCTACCGGCCTCTACAGCTGCCTGGCACCCTGTGTGCGCAAGCTGCCCTTCTGCACGTGCA
GGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGTCCACAGGCCCGCATGCTGCTGCTGGC
CCTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTGTCTTCCGTAATGAGGACCAGTGGGCATGG
GTCCTGCAGGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAGGACCATTCGCCTGCCCA
CCTTCAAGGCCTGCACACTGCTGCTGCTGGTGCTCTTCGTCTACGACATCTTCTTCGTCTTCAT
CACCCCCTACCTGACCAAGAGCGGCAACAGCATCATGGTGGAGGTGGCCACTGGGCCCTCGAAC
TCATCCACCCATGAGAAGCTGCCCATGGTGCTGAAGGTGCCCAGGCTGAACACCTCGCCTCTCT
CCCTGTGTGACCGGCCCTTCTCCCTTCTGGGCTTTGGAGACATCTTGGTGCCAGGGCTGCTGGT
GGCCTACTGCCACAGGTTTGATATCCAGGTGCAGTCCTCCAGGATTTACTTTGTGGCCTGCACC
ATTGCCTATGGCCTGGGCCTCCTGGTGACCTTCGTGGCTCTCGTCCTCATGCGACATGGCCAGC
CTGCACTCCTCTACTTGGTCCCCTGCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGCGCCG
GGAGATGGGCGCCTTCTGGACGGGCAGCGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGGCT
GCACCCCAGGGACCTGTGCCTCCGAAGGATGTGGATGCCTCTCTCTCGGAGCAGCCTCGGGGTG
AAGAGCTGGCCCAGAGCCCCCTGGCCACTGAGGAGGCAGGAGCCACAGACCCTGCCAAGGATCC
TGACAGCCCTGTGGCCGGTCCCCTCAGCCCCTCAAATGGGGACCAAGTCCAGCCTATACCTGTG
GTGACCCCAGGGACCTCGGCCTAGGAAGAGGCAATGTGAGAGCTGGGCCCTCGCAGCCTTCCAT
GCCACACAGATGCCGGCCACCTGGGACCTGCAGGGGACAGGGACAGCTGCCACCCACCAGAGTG
ACAGACCTGCGCTATGTCCCTCCAACATGGTGCTCAGCCCTCTGAGGCCTCAAGTCCGTACTCC
CTCCAGCTGCACCCCAGCGACCAGCTCTGCTTCGCACCGGGCCGTGAGCTTCGCCTGCTGCCCA
CTCCATGCAAGGCCATGGCTGCCGTTGGTGCTTTGCTGATGCTCGCCCTGCGGGTGACCCATGA
CCGCTCCTCCCTCCATAGGATGGGGCTCTCTGGGGCCAGAGCAACAACCCCATGGAGCAGGCTC
CTGTGCTGGGAGCAGCCTTGAGGGGCCTAGATAGGGGCACCCTGCCCAAGGGCCTGGGCTTATG
CAAGGGGACCAGACCCCTTCAGGAGAGTCCGAGCCGAGATGGAGTTGAGGTTGCTGGTCACTGC
TGCAAGCCAGCAAACAGCGCCAGCTCCAGGTTCTGCAGCCGAGTAGGAGTTGGCCAGGTGTAGA
TGGCCACGTCCCCAGCAAATCGATCAGCCCAGGTGTGTGAGTCTTCCATGCAGGGGCCACTGCC
CTCTGCCCCAGCAGTGGCTTCTGGACTGGCGTCTGTCCTCTACCTCACCAACCAGGCTCTGGAC
TCCAGGACAGACCTGCCTGCAGGAGCCCTCCACACATGCTGCATGTCACTGAGGCTGAAGCCAA
GGTCCCCACAGGCTGTGACCGATCGGGAGCCATGGCCACCCACACTTGCATGGAAAAGGGTGTC
TGTTACAGGCTGACAGGCAGTGACAGCTGGGTGGTCCCCCTAGAGCTCTGGGGGGTGGTAGGGG
AGGACTCCCTAGGCACCCAGTCTAACCAGAACTGAGGGGCAGAGGAGTGCAGGCCCAGCCACCT
GCTTCTGCCATTGGACTGAGCCATTTTGTACTGGGTGTCCAAGCAGTCCTGCTCCTCTGAGTGG
TGGAGGTGCTCTGCGGGGTGCCCGAGGGCCCTGGCTTTTGGTTGTCAGGGGATTAAATACCTTT
TCATACTCACA

hide sequence

RefSeq Acc Id:

XM_008765110 ⟹ XP_008763332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,642 (-)	NCBI
Rnor_6.0	7	11,712,187 - 11,724,915 (-)	NCBI

Sequence:

show sequence

CAGACTCGGCGCATGCGCGTCGTGGGGTCCCGAAGGCGTTGCCAGGAAACCTTCCGCCTAGAAC
TGCGGTGGGACCGGCGGACATGGCGGCGGCGCGGCTGGCCGCATCCCTGCTGCTACTCGCGGCC
CAGGTGGCCTGTGAGTTCGGTGTACTGCGAGTTGTGCCCCAAAGCGGTGGGACCCGGGGCAGGG
ACTACTGCATCCTTTACAACCCACAGTGGGCCCACTTGCCTCATGACCTCAACAAAGTGTCTCT
TCTGAAGCTTCGAGACTTGAGCACGACTCAGCTCTGTTCCCACCTCGATGTTCCTGTAGAAGAC
TTCACCAACCAGATCGCACTGGTGGCTCGGGGCAACTGTACCTTCTATGAGAAAGTGCGGCTGG
CCCAGGGCAGTGGGGCACATGGGCTGCTGATAGTCAGCAAGGAGAGACTGGTCCCTCCAAGAGG
CAACAAGACACAGTATGAGGAGATAAGCATCCCTGTGGCCCTGCTAAGCCACAGGGACCTTCAA
GACATCTTCAGGCGCTTTGGCCACGAGGTAATGGTAGCCCTGTATGCTCCGAGCGAGCCAGTGA
TGGACTACAACATGGTCATCATCTTCATCATGGCCGTGGGCACCGTCGCCCTTGGTGGCTACTG
GGCTGGCAGTCATGATGTGAAGAAAAGGTACATGAAGCATAAGCGAGACGACGTCCCTGAGAAG
CAGGAGGATGAGGCGGTGGACGTGACGCCGGTCATGATCTGCGTGTTTGTTGTCATGTGCTGCT
TCATGCTTGTGCTCCTCTACTACTTCTATGACCGCTTGGTCTACGTGATCATTGGGATCTTCTG
CCTGGCCTCCTCTACCGGCCTCTACAGCTGCCTGGCACCCTGTGTGCGCAAGCTGCCCTTCTGC
ACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGTCCACAGGCCCGCATGCTGC
TGCTGGCCCTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTGTCTTCCGTAATGAGGACCAGTG
GGCATGGGTCCTGCAGGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAGGACCATTCGC
CTGCCCACCTTCAAGGTGAGGGCTGCCATGGCAGGGCAGGTCAATTCCTGGTGGGGGGCTGAGG
GCCTGGGCGCACAGGTCTCGAGGGCAGTGCTGGCTCCCACAGGCCTGCACACTGCTGCTGCTGG
TGCTCTTCGTCTACGACATCTTCTTCGTCTTCATCACCCCCTACCTGACCAAGGTAGGTCCCCT
CTACCCTCCCAGCTGCCCGCCCCTCCCCTGCCCTGGCTGACAACCTGTCTTGTGCAGAGCGGCA
ACAGCATCATGGTGGAGGTGGCCACTGGGCCCTCGAACTCATCCACCCATGAGAAGCTGCCCAT
GGTGCTGAAGGTGCCCAGGCTGAACACCTCGCCTCTCTCCCTGTGTGACCGGCCCTTCTCCCTT
CTGGGCTTTGGAGACATCTTGGTGCCAGGGCTGCTGGTGGCCTACTGCCACAGGTTTGATATCC
AGGTGCAGTCCTCCAGGATTTACTTTGTGGCCTGCACCATTGCCTATGGCCTGGGCCTCCTGGT
GACCTTCGTGGCTCTCGTCCTCATGCGACATGGCCAGCCTGCACTCCTCTACTTGGTCCCCTGC
ACACTGCTGACCAGCTGCACCGTGGCTCTGTGGCGCCGGGAGATGGGCGCCTTCTGGACGGGCA
GCGGTTTTGCGGATGCACCTCAGACCCCGTGGGCTGCACCCCAGGGACCTGTGCCTCCGAAGGA
TGTGGATGCCTCTCTCTCGGAGCAGCCTCGGGGTGAAGAGCTGGCCCAGAGCCCCCTGGCCACT
GAGGAGGCAGGAGCCACAGACCCTGCCAAGGATCCTGACAGCCCTGTGGCCGGTCCCCTCAGCC
CCTCAAATGGGGACCAAGTCCAGCCTATACCTGTGGTGACCCCAGGGACCTCGGCCTAGGAAGA
GGCAATGTGAGAGCTGGGCCCTCGCAGCCTTCCATGCCACACAGATGCCGGCCACCTGGGACCT
GCAGGGGACAGGGACAGCTGCCACCCACCAGAGTGACAGACCTGCGCTATGTCCCTCCAACATG
GTGCTCAGCCCTCTGAGGCCTCAAGTCCGTACTCCCTCCAGCTGCACCCCAGCGACCAGCTCTG
CTTCGCACCGGGCCGTGAGCTTCGCCTGCTGCCCACTCCATGCAAGGCCATGGCTGCCGTTGGT
GCTTTGCTGATGCTCGCCCTGCGGGTGACCCATGACCGCTCCTCCCTCCATAGGATGGGGCTCT
CTGGGGCCAGAGCAACAACCCCATGGAGCAGGCTCCTGTGCTGGGAGCAGCCTTGAGGGGCCTA
GATAGGGGCACCCTGCCCAAGGGCCTGGGCTTATGCAAGGGGACCAGACCCCTTCAGGAGAGTC
CGAGCCGAGATGGAGTTGAGGTTGCTGGTCACTGCTGCAAGCCAGCAAACAGCGCCAGCTCCAG
GTTCTGCAGCCGAGTAGGAGTTGGCCAGGTGTAGATGGCCACGTCCCCAGCAAATCGATCAGCC
CAGGTGTGTGAGTCTTCCATGCAGGGGCCACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGG
CGTCTGTCCTCTACCTCACCAACCAGGCTCTGGACTCCAGGACAGACCTGCCTGCAGGAGCCCT
CCACACATGCTGCATGTCACTGAGGCTGAAGCCAAGGTCCCCACAGGCTGTGACCGATCGGGAG
CCATGGCCACCCACACTTGCATGGAAAAGGGTGTCTGTTACAGGCTGACAGGCAGTGACAGCTG
GGTGGTCCCCCTAGAGCTCTGGGGGGTGGTAGGGGAGGACTCCCTAGGCACCCAGTCTAACCAG
AACTGAGGGGCAGAGGAGTGCAGGCCCAGCCACCTGCTTCTGCCATTGGACTGAGCCATTTTGT
ACTGGGTGTCCAAGCAGTCCTGCTCCTCTGAGTGGTGGAGGTGCTCTGCGGGGTGCCCGAGGGC
CCTGGCTTTTGGTTGTCAGGGGATTAAATACCTTTTCATACTCACA

hide sequence

RefSeq Acc Id:

XM_008765111 ⟹ XP_008763333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,642 (-)	NCBI
Rnor_6.0	7	11,712,187 - 11,724,914 (-)	NCBI

Sequence:

show sequence

AGACTCGGCGCATGCGCGTCGTGGGGTCCCGAAGGCGTTGCCAGGAAACCTTCCGCCTAGAACT
GCGGTGGGACCGGCGGACATGGCGGCGGCGCGGCTGGCCGCATCCCTGCTGCTACTCGCGGCCC
AGGTGGCCTGTGAGTTCGGTGTACTGCGAGTTGTGCCCCAAAGCGGTGGGACCCGGGGCAGGGA
CTACTGCATCCTTTACAACCCACAGTGGGCCCACTTGCCTCATGACCTCAACAAAGTGTCTCTT
CTGAAGCTTCGAGACTTGAGCACGACTCAGCTCTGTTCCCACCTCGATGTTCCTGTAGAAGACT
TCACCAACCAGATCGCACTGGTGGCTCGGGGCAACTGTACCTTCTATGAGAAAGTGCGGCTGGC
CCAGGGCAGTGGGGCACATGGGCTGCTGATAGTCAGCAAGGAGAGACTGGTCCCTCCAAGAGGC
AACAAGACACAGTATGAGGAGATAAGCATCCCTGTGGCCCTGCTAAGCCACAGGGACCTTCAAG
ACATCTTCAGGCGCTTTGGCCACGAGGTAATGGTAGCCCTGTATGCTCCGAGCGAGCCAGTGAT
GGACTACAACATGGTCATCATCTTCATCATGGCCGTGGGCACCGTCGCCCTTGGTGGCTACTGG
GCTGGCAGTCATGATGTGAAGAAAAGGTACATGAAGCATAAGCGAGACGACGTCCCTGAGAAGC
AGGAGGATGAGGCGGTGGACGTGACGCCGGTCATGATCTGCGTGTTTGTTGTCATGTGCTGCTT
CATGCTTGTGCTCCTCTACTACTTCTATGACCGCTTGGTCTACGTGATCATTGGGATCTTCTGC
CTGGCCTCCTCTACCGGCCTCTACAGCTGCCTGGCACCCTGTGTGCGCAAGCTGCCCTTCTGCA
CGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGTCCACAGGCCCGCATGCTGCT
GCTGGCCCTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTGTCTTCCGTAATGAGGACCAGTGG
GCATGGGTCCTGCAGGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAGGACCATTCGCC
TGCCCACCTTCAAGGTGAGGGCTGCCATGGCAGGGCAGGTCAATTCCTGGTGGGGGGCTGAGGG
CCTGGGCGCACAGGTCTCGAGGGCAGTGCTGGCTCCCACAGGCCTGCACACTGCTGCTGCTGGT
GCTCTTCGTCTACGACATCTTCTTCGTCTTCATCACCCCCTACCTGACCAAGGTAGGTCCCCTC
TACCCTCCCAGCTGCCCGCCCCTCCCCTGCCCTGGCTGACAACCTGTCTTGTGCAGAGCGGCAA
CAGCATCATGGTGGAGGTGGCCACTGGGCCCTCGAACTCATCCACCCATGAGAAGCTGCCCATG
GTGCTGAAGGTGCCCAGGCTGAACACCTCGCCTCTCTCCCTGTGTGACCGGCCCTTCTCCCTTC
TGGGCTTTGGAGACATCTTGGTGCCAGGGCTGCTGGTGGCCTACTGCCACAGGTTTGATATCCA
GGTGCAGTCCTCCAGGATTTACTTTGTGGCCTGCACCATTGCCTATGGCCTGGGCCTCCTGGTG
ACCTTCGTGGCTCTCGTCCTCATGCGACATGGCCAGCCTGCACTCCTCTACTTGGTCCCCTGCA
CACTGCTGACCAGCTGCACCGTGGCTCTGTGGCGCCGGGAGATGGGCGCCTTCTGGACGGGCAG
CGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGGCTGCACCCCAGGGACCTGTGCCTCCGAAG
GATGTGGATGCCTCTCTCTCGGAGCAGCCTCGGGGTGAAGAGCTGGCCCAGAGCCCCCTGGCCA
CTGAGGAGGCAGGAGCCACAGACCCTGCCAAGGATCCTGACAGCCCTGTGGCCGGTCCCCTCAG
CCCCTCAAATGGGGACCAAGTCCAGCCTATACCTGTGGTGACCCCAGGGACCTCGGCCTAGGAA
GAGGCAATGTGAGAGCTGGGCCCTCGCAGCCTTCCATGCCACACAGATGCCGGCCACCTGGGAC
CTGCAGGGGACAGGGACAGCTGCCACCCACCAGAGTGACAGACCTGCGCTATGTCCCTCCAACA
TGGTGCTCAGCCCTCTGAGGCCTCAAGTCCGTACTCCCTCCAGCTGCACCCCAGCGACCAGCTC
TGCTTCGCACCGGGCCGTGAGCTTCGCCTGCTGCCCACTCCATGCAAGGCCATGGCTGCCGTTG
GTGCTTTGCTGATGCTCGCCCTGCGGGTGACCCATGACCGCTCCTCCCTCCATAGGATGGGGCT
CTCTGGGGCCAGAGCAACAACCCCATGGAGCAGGCTCCTGTGCTGGGAGCAGCCTTGAGGGGCC
TAGATAGGGGCACCCTGCCCAAGGGCCTGGGCTTATGCAAGGGGACCAGACCCCTTCAGGAGAG
TCCGAGCCGAGATGGAGTTGAGGTTGCTGGTCACTGCTGCAAGCCAGCAAACAGCGCCAGCTCC
AGGTTCTGCAGCCGAGTAGGAGTTGGCCAGGTGTAGATGGCCACGTCCCCAGCAAATCGATCAG
CCCAGGTGTGTGAGTCTTCCATGCAGGGGCCACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACT
GGCGTCTGTCCTCTACCTCACCAACCAGGCTCTGGACTCCAGGACAGACCTGCCTGCAGGAGCC
CTCCACACATGCTGCATGTCACTGAGGCTGAAGCCAAGGTCCCCACAGGCTGTGACCGATCGGG
AGCCATGGCCACCCACACTTGCATGGAAAAGGGTGTCTGTTACAGGCTGACAGGCAGTGACAGC
TGGGTGGTCCCCCTAGAGCTCTGGGGGGTGGTAGGGGAGGACTCCCTAGGCACCCAGTCTAACC
AGAACTGAGGGGCAGAGGAGTGCAGGCCCAGCCACCTGCTTCTGCCATTGGACTGAGCCATTTT
GTACTGGGTGTCCAAGCAGTCCTGCTCCTCTGAGTGGTGGAGGTGCTCTGCGGGGTGCCCGAGG
GCCCTGGCTTTTGGTTGTCAGGGGATTAAATACCTTTTCATACTCACA

hide sequence

RefSeq Acc Id:

XM_008765112 ⟹ XP_008763334

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,642 (-)	NCBI
Rnor_6.0	7	11,712,187 - 11,724,914 (-)	NCBI

Sequence:

show sequence

AGACTCGGCGCATGCGCGTCGTGGGGTCCCGAAGGCGTTGCCAGGAAACCTTCCGCCTAGAACT
GCGGTGGGACCGGCGGACATGGCGGCGGCGCGGCTGGCCGCATCCCTGCTGCTACTCGCGGCCC
AGGTGGCCTGTGAGTTCGGTGTACTGCGAGTTGTGCCCCAAAGCGGTGGGACCCGGGGCAGGGA
CTACTGCATCCTTTACAACCCACAGTGGGCCCACTTGCCTCATGACCTCAACAAAGTGTCTCTT
CTGAAGCTTCGAGACTTGAGCACGACTCAGCTCTGTTCCCACCTCGATGTTCCTGTAGAAGACT
TCACCAACCAGATCGCACTGGTGGCTCGGGGCAACTGTACCTTCTATGAGAAAGTGCGGCTGGC
CCAGGGCAGTGGGGCACATGGGCTGCTGATAGTCAGCAAGGAGAGACTGGTCCCTCCAAGAGGC
AACAAGACACAGTATGAGGAGATAAGCATCCCTGTGGCCCTGCTAAGCCACAGGGACCTTCAAG
ACATCTTCAGGCGCTTTGGCCACGAGGTAATGGTAGCCCTGTATGCTCCGAGCGAGCCAGTGAT
GGACTACAACATGGTCATCATCTTCATCATGGCCGTGGGCACCGTCGCCCTTGGTGGCTACTGG
GCTGGCAGTCATGATGTGAAGAAGTACATGAAGCATAAGCGAGACGACGTCCCTGAGAAGCAGG
AGGATGAGGCGGTGGACGTGACGCCGGTCATGATCTGCGTGTTTGTTGTCATGTGCTGCTTCAT
GCTTGTGCTCCTCTACTACTTCTATGACCGCTTGGTCTACGTGATCATTGGGATCTTCTGCCTG
GCCTCCTCTACCGGCCTCTACAGCTGCCTGGCACCCTGTGTGCGCAAGCTGCCCTTCTGCACGT
GCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGTCCACAGGCCCGCATGCTGCTGCT
GGCCCTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTGTCTTCCGTAATGAGGACCAGTGGGCA
TGGGTCCTGCAGGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAGGACCATTCGCCTGC
CCACCTTCAAGGTGAGGGCTGCCATGGCAGGGCAGGTCAATTCCTGGTGGGGGGCTGAGGGCCT
GGGCGCACAGGTCTCGAGGGCAGTGCTGGCTCCCACAGGCCTGCACACTGCTGCTGCTGGTGCT
CTTCGTCTACGACATCTTCTTCGTCTTCATCACCCCCTACCTGACCAAGGTAGGTCCCCTCTAC
CCTCCCAGCTGCCCGCCCCTCCCCTGCCCTGGCTGACAACCTGTCTTGTGCAGAGCGGCAACAG
CATCATGGTGGAGGTGGCCACTGGGCCCTCGAACTCATCCACCCATGAGAAGCTGCCCATGGTG
CTGAAGGTGCCCAGGCTGAACACCTCGCCTCTCTCCCTGTGTGACCGGCCCTTCTCCCTTCTGG
GCTTTGGAGACATCTTGGTGCCAGGGCTGCTGGTGGCCTACTGCCACAGGTTTGATATCCAGGT
GCAGTCCTCCAGGATTTACTTTGTGGCCTGCACCATTGCCTATGGCCTGGGCCTCCTGGTGACC
TTCGTGGCTCTCGTCCTCATGCGACATGGCCAGCCTGCACTCCTCTACTTGGTCCCCTGCACAC
TGCTGACCAGCTGCACCGTGGCTCTGTGGCGCCGGGAGATGGGCGCCTTCTGGACGGGCAGCGG
TTTTGCGAAGGATGCACCTCAGACCCCGTGGGCTGCACCCCAGGGACCTGTGCCTCCGAAGGAT
GTGGATGCCTCTCTCTCGGAGCAGCCTCGGGGTGAAGAGCTGGCCCAGAGCCCCCTGGCCACTG
AGGAGGCAGGAGCCACAGACCCTGCCAAGGATCCTGACAGCCCTGTGGCCGGTCCCCTCAGCCC
CTCAAATGGGGACCAAGTCCAGCCTATACCTGTGGTGACCCCAGGGACCTCGGCCTAGGAAGAG
GCAATGTGAGAGCTGGGCCCTCGCAGCCTTCCATGCCACACAGATGCCGGCCACCTGGGACCTG
CAGGGGACAGGGACAGCTGCCACCCACCAGAGTGACAGACCTGCGCTATGTCCCTCCAACATGG
TGCTCAGCCCTCTGAGGCCTCAAGTCCGTACTCCCTCCAGCTGCACCCCAGCGACCAGCTCTGC
TTCGCACCGGGCCGTGAGCTTCGCCTGCTGCCCACTCCATGCAAGGCCATGGCTGCCGTTGGTG
CTTTGCTGATGCTCGCCCTGCGGGTGACCCATGACCGCTCCTCCCTCCATAGGATGGGGCTCTC
TGGGGCCAGAGCAACAACCCCATGGAGCAGGCTCCTGTGCTGGGAGCAGCCTTGAGGGGCCTAG
ATAGGGGCACCCTGCCCAAGGGCCTGGGCTTATGCAAGGGGACCAGACCCCTTCAGGAGAGTCC
GAGCCGAGATGGAGTTGAGGTTGCTGGTCACTGCTGCAAGCCAGCAAACAGCGCCAGCTCCAGG
TTCTGCAGCCGAGTAGGAGTTGGCCAGGTGTAGATGGCCACGTCCCCAGCAAATCGATCAGCCC
AGGTGTGTGAGTCTTCCATGCAGGGGCCACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGGC
GTCTGTCCTCTACCTCACCAACCAGGCTCTGGACTCCAGGACAGACCTGCCTGCAGGAGCCCTC
CACACATGCTGCATGTCACTGAGGCTGAAGCCAAGGTCCCCACAGGCTGTGACCGATCGGGAGC
CATGGCCACCCACACTTGCATGGAAAAGGGTGTCTGTTACAGGCTGACAGGCAGTGACAGCTGG
GTGGTCCCCCTAGAGCTCTGGGGGGTGGTAGGGGAGGACTCCCTAGGCACCCAGTCTAACCAGA
ACTGAGGGGCAGAGGAGTGCAGGCCCAGCCACCTGCTTCTGCCATTGGACTGAGCCATTTTGTA
CTGGGTGTCCAAGCAGTCCTGCTCCTCTGAGTGGTGGAGGTGCTCTGCGGGGTGCCCGAGGGCC
CTGGCTTTTGGTTGTCAGGGGATTAAATACCTTTTCATACTCACA

hide sequence

RefSeq Acc Id:

XM_039079385 ⟹ XP_038935313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,495,767 - 9,507,317 (-)	NCBI
mRatBN7.2	7	8,845,093 - 8,856,642 (-)	NCBI

RefSeq Acc Id:

XM_039079386 ⟹ XP_038935314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI
mRatBN7.2	7	8,843,918 - 8,856,642 (-)	NCBI

RefSeq Acc Id:

XM_039079389 ⟹ XP_038935317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,498,462 - 9,507,317 (-)	NCBI
mRatBN7.2	7	8,847,791 - 8,856,642 (-)	NCBI

RefSeq Acc Id:

XM_063263721 ⟹ XP_063119791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263723 ⟹ XP_063119793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263724 ⟹ XP_063119794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263725 ⟹ XP_063119795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263726 ⟹ XP_063119796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263727 ⟹ XP_063119797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263728 ⟹ XP_063119798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263730 ⟹ XP_063119800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,506,701 (-)	NCBI

RefSeq Acc Id:

XM_063263731 ⟹ XP_063119801

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,279 (-)	NCBI

RefSeq Acc Id:

XM_063263732 ⟹ XP_063119802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263733 ⟹ XP_063119803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263734 ⟹ XP_063119804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263735 ⟹ XP_063119805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263736 ⟹ XP_063119806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,507,317 (-)	NCBI

RefSeq Acc Id:

XM_063263737 ⟹ XP_063119807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,498,640 (-)	NCBI

RefSeq Acc Id:

XM_063263739 ⟹ XP_063119809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,498,462 (-)	NCBI

RefSeq Acc Id:

XM_063263740 ⟹ XP_063119810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,494,593 - 9,498,640 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014222	(Get FASTA)	NCBI Sequence Viewer
	NP_001388002	(Get FASTA)	NCBI Sequence Viewer
	NP_001388003	(Get FASTA)	NCBI Sequence Viewer
	XP_006241010	(Get FASTA)	NCBI Sequence Viewer
	XP_008763332	(Get FASTA)	NCBI Sequence Viewer
	XP_008763333	(Get FASTA)	NCBI Sequence Viewer
	XP_008763334	(Get FASTA)	NCBI Sequence Viewer
	XP_038935313	(Get FASTA)	NCBI Sequence Viewer
	XP_038935314	(Get FASTA)	NCBI Sequence Viewer
	XP_038935317	(Get FASTA)	NCBI Sequence Viewer
	XP_063119791	(Get FASTA)	NCBI Sequence Viewer
	XP_063119793	(Get FASTA)	NCBI Sequence Viewer
	XP_063119794	(Get FASTA)	NCBI Sequence Viewer
	XP_063119795	(Get FASTA)	NCBI Sequence Viewer
	XP_063119796	(Get FASTA)	NCBI Sequence Viewer
	XP_063119797	(Get FASTA)	NCBI Sequence Viewer
	XP_063119798	(Get FASTA)	NCBI Sequence Viewer
	XP_063119800	(Get FASTA)	NCBI Sequence Viewer
	XP_063119801	(Get FASTA)	NCBI Sequence Viewer
	XP_063119802	(Get FASTA)	NCBI Sequence Viewer
	XP_063119803	(Get FASTA)	NCBI Sequence Viewer
	XP_063119804	(Get FASTA)	NCBI Sequence Viewer
	XP_063119805	(Get FASTA)	NCBI Sequence Viewer
	XP_063119806	(Get FASTA)	NCBI Sequence Viewer
	XP_063119807	(Get FASTA)	NCBI Sequence Viewer
	XP_063119809	(Get FASTA)	NCBI Sequence Viewer
	XP_063119810	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87132	(Get FASTA)	NCBI Sequence Viewer
	EDL89213	(Get FASTA)	NCBI Sequence Viewer
	EDL89214	(Get FASTA)	NCBI Sequence Viewer
	EDL89215	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074120
	ENSRNOP00000081849
GenBank Protein	Q5PQL3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014222 ⟸ NM_001014200
- Peptide Label:	isoform 2 precursor
- UniProtKB:	Q5PQL3 (UniProtKB/Swiss-Prot), A0A8I5ZVS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAARLAASLLLLAAQVACEFGVLRVVPQSGGTRGRDYCILYNPQWAHLPHDLNKVSLLKLRDL STTQLCSHLDVPVEDFTNQIALVARGNCTFYEKVRLAQGSGAHGLLIVSKERLVPPRGNKTQYE EISIPVALLSHRDLQDIFRRFGHEVMVALYAPSEPVMDYNMVIIFIMAVGTVALGGYWAGSHDV KKYMKHKRDDVPEKQEDEAVDVTPVMICVFVVMCCFMLVLLYYFYDRLVYVIIGIFCLASSTGL YSCLAPCVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGVFRNEDQWAWVLQDT LGIAFCLYMLRTIRLPTFKACTLLLLVLFVYDIFFVFITPYLTKSGNSIMVEVATGPSNSSTHE KLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGL GLLVTFVALVLMRHGQPALLYLVPCTLLTSCTVALWRREMGAFWTGSGFADAPQTPWAAPQGPV PPKDVDASLSEQPRGEELAQSPLATEEAGATDPAKDPDSPVAGPLSPSNGDQVQPIPVVTPGTS A hide sequence

RefSeq Acc Id:	XP_006241010 ⟸ XM_006240948
- Peptide Label:	isoform X11
- UniProtKB:	A0A8L2R960 (UniProtKB/TrEMBL), A0A8I5ZVS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAARLAASLLLLAAQVACEFGVLRVVPQSGGTRGRDYCILYNPQWAHLPHDLNKVSLLKLRDL STTQLCSHLDVPVEDFTNQIALVARGNCTFYEKVRLAQGSGAHGLLIVSKERLVPPRGNKTQYE EISIPVALLSHRDLQDIFRRFGHEVMVALYAPSEPVMDYNMVIIFIMAVGTVALGGYWAGSHDV KKYMKHKRDDVPEKQEDEAVDVTPVMICVFVVMCCFMLVLLYYFYDRLVYVIIGIFCLASSTGL YSCLAPCVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGVFRNEDQWAWVLQDT LGIAFCLYMLRTIRLPTFKACTLLLLVLFVYDIFFVFITPYLTKSGNSIMVEVATGPSNSSTHE KLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGL GLLVTFVALVLMRHGQPALLYLVPCTLLTSCTVALWRREMGAFWTGSGFAKDAPQTPWAAPQGP VPPKDVDASLSEQPRGEELAQSPLATEEAGATDPAKDPDSPVAGPLSPSNGDQVQPIPVVTPGT SA hide sequence

RefSeq Acc Id:	XP_008763334 ⟸ XM_008765112
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAARLAASLLLLAAQVACEFGVLRVVPQSGGTRGRDYCILYNPQWAHLPHDLNKVSLLKLRDL STTQLCSHLDVPVEDFTNQIALVARGNCTFYEKVRLAQGSGAHGLLIVSKERLVPPRGNKTQYE EISIPVALLSHRDLQDIFRRFGHEVMVALYAPSEPVMDYNMVIIFIMAVGTVALGGYWAGSHDV KKYMKHKRDDVPEKQEDEAVDVTPVMICVFVVMCCFMLVLLYYFYDRLVYVIIGIFCLASSTGL YSCLAPCVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGVFRNEDQWAWVLQDT LGIAFCLYMLRTIRLPTFKVRAAMAGQVNSWWGAEGLGAQVSRAVLAPTGLHTAAAGALRLRHL LRLHHPLPDQGRSPLPSQLPAPPLPWLTTCLVQSGNSIMVEVATGPSNSSTHEKLPMVLKVPRL NTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVL MRHGQPALLYLVPCTLLTSCTVALWRREMGAFWTGSGFAKDAPQTPWAAPQGPVPPKDVDASLS EQPRGEELAQSPLATEEAGATDPAKDPDSPVAGPLSPSNGDQVQPIPVVTPGTSA hide sequence

RefSeq Acc Id:	XP_008763333 ⟸ XM_008765111
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAARLAASLLLLAAQVACEFGVLRVVPQSGGTRGRDYCILYNPQWAHLPHDLNKVSLLKLRDL STTQLCSHLDVPVEDFTNQIALVARGNCTFYEKVRLAQGSGAHGLLIVSKERLVPPRGNKTQYE EISIPVALLSHRDLQDIFRRFGHEVMVALYAPSEPVMDYNMVIIFIMAVGTVALGGYWAGSHDV KKRYMKHKRDDVPEKQEDEAVDVTPVMICVFVVMCCFMLVLLYYFYDRLVYVIIGIFCLASSTG LYSCLAPCVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGVFRNEDQWAWVLQD TLGIAFCLYMLRTIRLPTFKVRAAMAGQVNSWWGAEGLGAQVSRAVLAPTGLHTAAAGALRLRH LLRLHHPLPDQGRSPLPSQLPAPPLPWLTTCLVQSGNSIMVEVATGPSNSSTHEKLPMVLKVPR LNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALV LMRHGQPALLYLVPCTLLTSCTVALWRREMGAFWTGSGFAKDAPQTPWAAPQGPVPPKDVDASL SEQPRGEELAQSPLATEEAGATDPAKDPDSPVAGPLSPSNGDQVQPIPVVTPGTSA hide sequence

RefSeq Acc Id:	XP_008763332 ⟸ XM_008765110
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAARLAASLLLLAAQVACEFGVLRVVPQSGGTRGRDYCILYNPQWAHLPHDLNKVSLLKLRDL STTQLCSHLDVPVEDFTNQIALVARGNCTFYEKVRLAQGSGAHGLLIVSKERLVPPRGNKTQYE EISIPVALLSHRDLQDIFRRFGHEVMVALYAPSEPVMDYNMVIIFIMAVGTVALGGYWAGSHDV KKRYMKHKRDDVPEKQEDEAVDVTPVMICVFVVMCCFMLVLLYYFYDRLVYVIIGIFCLASSTG LYSCLAPCVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGVFRNEDQWAWVLQD TLGIAFCLYMLRTIRLPTFKVRAAMAGQVNSWWGAEGLGAQVSRAVLAPTGLHTAAAGALRLRH LLRLHHPLPDQGRSPLPSQLPAPPLPWLTTCLVQSGNSIMVEVATGPSNSSTHEKLPMVLKVPR LNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALV LMRHGQPALLYLVPCTLLTSCTVALWRREMGAFWTGSGFADAPQTPWAAPQGPVPPKDVDASLS EQPRGEELAQSPLATEEAGATDPAKDPDSPVAGPLSPSNGDQVQPIPVVTPGTSA hide sequence

Ensembl Acc Id:

ENSRNOP00000074120 ⟸ ENSRNOT00000084144

RefSeq Acc Id:	XP_038935314 ⟸ XM_039079386
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935313 ⟸ XM_039079385
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6GG67 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935317 ⟸ XM_039079389
- Peptide Label:	isoform X23

Ensembl Acc Id:

ENSRNOP00000089491 ⟸ ENSRNOT00000097476

Ensembl Acc Id:

ENSRNOP00000081849 ⟸ ENSRNOT00000109298

Ensembl Acc Id:

ENSRNOP00000087622 ⟸ ENSRNOT00000100592

RefSeq Acc Id:	NP_001388003 ⟸ NM_001401074
- Peptide Label:	isoform 3 precursor
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388002 ⟸ NM_001401073
- Peptide Label:	isoform 1 precursor
- UniProtKB:	A6K8E3 (UniProtKB/TrEMBL), A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119806 ⟸ XM_063263736
- Peptide Label:	isoform X19
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119804 ⟸ XM_063263734
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119805 ⟸ XM_063263735
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119802 ⟸ XM_063263732
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6GG67 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119796 ⟸ XM_063263726
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119793 ⟸ XM_063263723
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063119797 ⟸ XM_063263727
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119803 ⟸ XM_063263733
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119795 ⟸ XM_063263725
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZVS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119794 ⟸ XM_063263724
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063119798 ⟸ XM_063263728
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6GG67 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119791 ⟸ XM_063263721
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063119801 ⟸ XM_063263731
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063119800 ⟸ XM_063263730
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063119810 ⟸ XM_063263740
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_063119807 ⟸ XM_063263737
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_063119809 ⟸ XM_063263739
- Peptide Label:	isoform X21

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQL3-F1-model_v2	AlphaFold	Q5PQL3	1-577	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694999

Promoter ID:

EPDNEW_R5523

Type:

multiple initiation site

Name:

Sppl2b_1

Description:

signal peptide peptidase-like 2B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	11,724,860 - 11,724,920	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308556	AgrOrtholog
BioCyc Gene	G2FUF-34974	BioCyc
Ensembl Genes	ENSRNOG00000057881	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000084144	ENTREZGENE
	ENSRNOT00000109298	ENTREZGENE
Gene3D-CATH	3.50.30.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7121303	IMAGE-MGC_LOAD
InterPro	PA_dom_sf	UniProtKB/Swiss-Prot
	PA_domain	UniProtKB/Swiss-Prot
	Peptidase_A22B_SPP	UniProtKB/Swiss-Prot
	Preselin/SPP	UniProtKB/Swiss-Prot
KEGG Report	rno:362828	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95005	IMAGE-MGC_LOAD
NCBI Gene	362828	ENTREZGENE
PANTHER	PTHR12174	UniProtKB/Swiss-Prot
	PTHR12174:SF39	UniProtKB/Swiss-Prot
Pfam	Peptidase_A22B	UniProtKB/Swiss-Prot
	PF02225	UniProtKB/Swiss-Prot
PhenoGen	Sppl2b	PhenoGen
RatGTEx	ENSRNOG00000057881	RatGTEx
SMART	PSN	UniProtKB/Swiss-Prot
Superfamily-SCOP	PA domain	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZVS2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A7E0_RAT	UniProtKB/TrEMBL
	A0A8I6GG67	ENTREZGENE
	A0A8L2R960	ENTREZGENE, UniProtKB/TrEMBL
	A6K8E3	ENTREZGENE, UniProtKB/TrEMBL
	Q5PQL3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-26	Sppl2b	signal peptide peptidase-like 2B	RGD1308556	similar to SPPL2b; presenilin-like protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308556	similar to SPPL2b; presenilin-like protein 1	RGD1308556_predicted	similar to SPPL2b; presenilin-like protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308556_predicted	similar to SPPL2b; presenilin-like protein 1 (predicted)	LOC362828_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362828_predicted	similar to SPPL2b; presenilin-like protein 1 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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