Bdp1 (BDP1 general transcription factor IIIB subunit) - Rat Genome Database

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Gene: Bdp1 (BDP1 general transcription factor IIIB subunit) Rattus norvegicus
Analyze
Symbol: Bdp1
Name: BDP1 general transcription factor IIIB subunit (Ensembl:B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB)
RGD ID: 1308512
Description: Predicted to enable TFIIIC-class transcription factor complex binding activity. Predicted to be involved in RNA polymerase III preinitiation complex assembly. Predicted to be part of transcription factor TFIIIB complex. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 112. Orthologous to human BDP1 (BDP1 general transcription factor IIIB subunit); PARTICIPATES IN RNA polymerase III transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB; LOC294687; transcription factor TFIIIB component B'' homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,112,518 - 33,204,270 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl233,112,518 - 33,204,241 (-)EnsemblGRCr8
mRatBN7.2231,378,407 - 31,470,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,378,924 - 31,470,119 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx238,456,513 - 38,547,899 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0236,550,865 - 36,642,249 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,343,881 - 31,435,274 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,248,458 - 30,340,211 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,250,633 - 30,340,208 (-)Ensemblrn6Rnor6.0
Rnor_5.0249,486,780 - 49,499,375 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4231,035,334 - 31,127,835 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera227,479,805 - 27,492,400 (-)NCBICelera
RGSC_v3.1230,958,250 - 31,048,519 (-)NCBI
Cytogenetic Map2q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. A structural perspective on RNA polymerase I and RNA polymerase III transcription machineries. Vannini A Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):258-64. doi: 10.1016/j.bbagrm.2012.09.009. Epub 2012 Sep 29.
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Bdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,112,518 - 33,204,270 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl233,112,518 - 33,204,241 (-)EnsemblGRCr8
mRatBN7.2231,378,407 - 31,470,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,378,924 - 31,470,119 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx238,456,513 - 38,547,899 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0236,550,865 - 36,642,249 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,343,881 - 31,435,274 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,248,458 - 30,340,211 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,250,633 - 30,340,208 (-)Ensemblrn6Rnor6.0
Rnor_5.0249,486,780 - 49,499,375 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4231,035,334 - 31,127,835 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera227,479,805 - 27,492,400 (-)NCBICelera
RGSC_v3.1230,958,250 - 31,048,519 (-)NCBI
Cytogenetic Map2q12NCBI
BDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38571,455,651 - 71,578,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl571,455,651 - 71,567,820 (+)Ensemblhg38GRCh38
GRCh37570,751,478 - 70,863,647 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36570,787,198 - 70,899,405 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34570,787,268 - 70,877,060NCBI
Celera566,647,216 - 66,759,382 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef565,957,875 - 66,069,434 (+)NCBIHuRef
CHM1_1570,184,159 - 70,296,352 (+)NCBICHM1_1
T2T-CHM13v2.0571,936,967 - 72,059,628 (+)NCBIT2T-CHM13v2.0
Bdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913100,154,502 - 100,244,524 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13100,154,502 - 100,240,578 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3813100,017,994 - 100,104,090 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13100,017,994 - 100,104,070 (-)Ensemblmm10GRCm38
MGSCv3713100,787,949 - 100,874,025 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3613101,118,251 - 101,204,327 (-)NCBIMGSCv36mm8
Celera13103,671,638 - 103,757,601 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.92NCBI
Bdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955575330,683 - 430,269 (+)NCBIChiLan1.0ChiLan1.0
BDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2443,745,852 - 44,032,213 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1541,899,476 - 42,107,897 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0543,733,861 - 43,856,941 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1544,378,112 - 44,497,302 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl544,388,582 - 44,497,302 (-)EnsemblpanPan2panpan1.1
BDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,654,406 - 54,743,443 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,654,481 - 54,740,787 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha251,620,777 - 51,709,962 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0255,167,775 - 55,256,965 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl255,167,988 - 55,254,459 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1252,230,430 - 52,319,632 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0252,997,336 - 53,086,508 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,888,614 - 53,977,868 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213185,915,487 - 186,016,971 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365494,842,004 - 4,943,399 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1647,801,315 - 47,908,851 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11647,801,273 - 47,909,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21651,748,126 - 51,854,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BDP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1465,815,105 - 65,925,928 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl465,814,993 - 65,914,253 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604914,557,750 - 14,670,994 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bdp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624905524,880 - 638,237 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624905525,302 - 637,951 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Bdp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13196,495,038 - 196,587,349 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bdp1
632 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:121
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000024023, ENSRNOT00000067722
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
D2Got368  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8233,119,238 - 33,119,338 (+)Marker Load Pipeline
mRatBN7.2231,385,127 - 31,385,227 (+)MAPPERmRatBN7.2
Rnor_6.0230,255,180 - 30,255,279NCBIRnor6.0
Rnor_5.0249,413,872 - 49,413,971UniSTSRnor5.0
RGSC_v3.4231,042,348 - 31,042,447UniSTSRGSC3.4
Celera227,406,947 - 27,407,046UniSTS
Cytogenetic Map2q12UniSTS
BF394779  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,448,979 - 31,449,070 (+)MAPPERmRatBN7.2
Rnor_6.0230,319,041 - 30,319,131NCBIRnor6.0
Rnor_5.0249,478,208 - 49,478,298UniSTSRnor5.0
RGSC_v3.4231,106,683 - 31,106,773UniSTSRGSC3.4
Celera227,471,263 - 27,471,353UniSTS
RH 3.4 Map279.6UniSTS
Cytogenetic Map2q12UniSTS
RH134708  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,378,534 - 31,378,723 (+)MAPPERmRatBN7.2
Rnor_6.0230,248,588 - 30,248,776NCBIRnor6.0
Rnor_5.0249,407,225 - 49,407,413UniSTSRnor5.0
RGSC_v3.4231,035,461 - 31,035,649UniSTSRGSC3.4
Celera227,400,332 - 27,400,520UniSTS
RH 3.4 Map261.7UniSTS
Cytogenetic Map2q12UniSTS
RH136673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,380,375 - 31,380,530 (+)MAPPERmRatBN7.2
Rnor_6.0230,250,429 - 30,250,583NCBIRnor6.0
Rnor_5.0249,409,066 - 49,409,220UniSTSRnor5.0
RGSC_v3.4231,037,302 - 31,037,456UniSTSRGSC3.4
Celera227,402,173 - 27,402,327UniSTS
RH 3.4 Map264.2UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024023   ⟹   ENSRNOP00000024023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl233,112,518 - 33,204,241 (-)Ensembl
mRatBN7.2 Ensembl231,378,924 - 31,470,119 (-)Ensembl
Rnor_6.0 Ensembl230,250,633 - 30,340,103 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067722   ⟹   ENSRNOP00000061997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,327,691 - 30,340,208 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,314,004 - 30,336,079 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130376   ⟹   ENSRNOP00000099095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl233,112,518 - 33,204,241 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000133580   ⟹   ENSRNOP00000105845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl233,112,518 - 33,204,240 (-)Ensembl
RefSeq Acc Id: NM_001199195   ⟹   NP_001186124
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,191,625 - 33,204,241 (-)NCBI
mRatBN7.2231,457,523 - 31,470,140 (-)NCBI
Rnor_6.0230,327,613 - 30,340,208 (-)NCBI
Rnor_5.0249,486,780 - 49,499,375 (-)NCBI
Celera227,479,805 - 27,492,400 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001402161   ⟹   NP_001389090
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,112,518 - 33,204,241 (-)NCBI
mRatBN7.2231,378,407 - 31,470,140 (-)NCBI
RefSeq Acc Id: XM_063281495   ⟹   XP_063137565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,112,518 - 33,204,270 (-)NCBI
RefSeq Acc Id: XM_063281496   ⟹   XP_063137566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,112,518 - 33,204,243 (-)NCBI
RefSeq Acc Id: XM_063281497   ⟹   XP_063137567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,112,518 - 33,204,243 (-)NCBI
RefSeq Acc Id: XM_063281498   ⟹   XP_063137568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,142,773 - 33,204,243 (-)NCBI
RefSeq Acc Id: NP_001186124   ⟸   NM_001199195
- Peptide Label: isoform 2
- UniProtKB: B2RZ11 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061997   ⟸   ENSRNOT00000067722
Ensembl Acc Id: ENSRNOP00000024023   ⟸   ENSRNOT00000024023
RefSeq Acc Id: NP_001389090   ⟸   NM_001402161
- Peptide Label: isoform 1
RefSeq Acc Id: XP_063137565   ⟸   XM_063281495
- Peptide Label: isoform X1
- UniProtKB: D3ZDI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137566   ⟸   XM_063281496
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063137567   ⟸   XM_063281497
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063137568   ⟸   XM_063281498
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000105845   ⟸   ENSRNOT00000133580
Ensembl Acc Id: ENSRNOP00000099095   ⟸   ENSRNOT00000130376
Protein Domains
Myb-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDI4-F1-model_v2 AlphaFold D3ZDI4 1-2486 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691105
Promoter ID:EPDNEW_R1626
Type:initiation region
Name:Bdp1_1
Description:B double prime 1, subunit of RNA polymerase III transcriptioninitiation factor IIIB
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0230,340,193 - 30,340,253EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308512 AgrOrtholog
BioCyc Gene G2FUF-54679 BioCyc
Ensembl Genes ENSRNOG00000017864 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024023 ENTREZGENE
  ENSRNOT00000024023.9 UniProtKB/TrEMBL
  ENSRNOT00000130376 ENTREZGENE
  ENSRNOT00000130376.1 UniProtKB/TrEMBL
  ENSRNOT00000133580.1 UniProtKB/TrEMBL
InterPro Homeodomain-like UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  TFIIIB_B''_Myb UniProtKB/TrEMBL
KEGG Report rno:294687 UniProtKB/TrEMBL
NCBI Gene 294687 ENTREZGENE
PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG UniProtKB/TrEMBL
Pfam Myb_DNA-bind_7 UniProtKB/TrEMBL
PhenoGen Bdp1 PhenoGen
RatGTEx ENSRNOG00000017864 RatGTEx
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0ABK0KWZ5_RAT UniProtKB/TrEMBL
  A0ABK0LUC8_RAT UniProtKB/TrEMBL
  B2RZ11 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDI4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-07 Bdp1  BDP1 general transcription factor IIIB subunit  Bdp1  B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Bdp1  B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB   Bdp1_predicted  B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Bdp1_predicted  B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB (predicted)      Symbol and Name status set to approved 70820 APPROVED