Sgo2 (shugoshin 2) - Rat Genome Database

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Gene: Sgo2 (shugoshin 2) Rattus norvegicus
Analyze
Symbol: Sgo2
Name: shugoshin 2
RGD ID: 1308450
Description: Predicted to be involved in meiotic sister chromatid cohesion. Predicted to act upstream of or within several processes, including meiotic nuclear division; meiotic sister chromatid cohesion; and positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric. Predicted to be located in condensed chromosome, centromeric region. Predicted to be part of mitotic cohesin complex. Predicted to be active in kinetochore. Orthologous to human SGO2 (shugoshin 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC316425; Sgol2; shugoshin-like 2; shugoshin-like 2 (S. pombe)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,032,083 - 67,067,439 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl967,042,833 - 67,068,152 (+)EnsemblGRCr8
mRatBN7.2959,548,605 - 59,573,229 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,548,683 - 59,573,229 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx968,050,804 - 68,073,293 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,166,717 - 73,189,206 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,484,820 - 71,507,309 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0964,898,380 - 64,923,023 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,898,459 - 64,923,012 (+)Ensemblrn6Rnor6.0
Rnor_5.0964,695,921 - 64,720,561 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4956,664,634 - 56,681,534 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera956,996,167 - 57,018,671 (+)NCBICelera
RGSC_v3.1956,809,175 - 56,834,098 (+)NCBI
Cytogenetic Map9q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
androstane-3,17-dione  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
diallyl trisulfide  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (EXP)
doxorubicin  (ISO)
Enterolactone  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fragrance  (ISO)
furan  (EXP)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
irinotecan  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
methotrexate  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
ochratoxin A  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triticonazole  (EXP)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17205076   PMID:17485487   PMID:18084284   PMID:18765791   PMID:19283064   PMID:25533956  


Genomics

Comparative Map Data
Sgo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,032,083 - 67,067,439 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl967,042,833 - 67,068,152 (+)EnsemblGRCr8
mRatBN7.2959,548,605 - 59,573,229 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,548,683 - 59,573,229 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx968,050,804 - 68,073,293 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,166,717 - 73,189,206 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,484,820 - 71,507,309 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0964,898,380 - 64,923,023 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,898,459 - 64,923,012 (+)Ensemblrn6Rnor6.0
Rnor_5.0964,695,921 - 64,720,561 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4956,664,634 - 56,681,534 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera956,996,167 - 57,018,671 (+)NCBICelera
RGSC_v3.1956,809,175 - 56,834,098 (+)NCBI
Cytogenetic Map9q31NCBI
SGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,526,142 - 200,584,096 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2200,510,008 - 200,584,096 (+)Ensemblhg38GRCh38
GRCh372201,390,865 - 201,448,819 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,099,185 - 201,156,750 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342201,216,462 - 201,273,720NCBI
Celera2195,145,716 - 195,203,700 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,242,173 - 193,300,154 (+)NCBIHuRef
CHM1_12201,396,844 - 201,454,804 (+)NCBICHM1_1
T2T-CHM13v2.02200,993,676 - 201,067,575 (+)NCBIT2T-CHM13v2.0
Sgo2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,024,499 - 58,065,436 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,035,130 - 58,065,058 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38157,985,340 - 58,026,277 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,995,971 - 58,025,899 (+)Ensemblmm10GRCm38
MGSCv37158,042,184 - 58,083,121 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36157,940,612 - 57,970,443 (+)NCBIMGSCv36mm8
Celera158,499,153 - 58,539,977 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.86NCBI
Sgo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403879,138 - 905,526 (-)Ensembl
ChiLan1.0NW_004955403879,354 - 905,605 (-)NCBIChiLan1.0ChiLan1.0
SGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,149,050 - 103,206,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,164,049 - 103,221,650 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B87,779,677 - 87,837,285 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B205,943,126 - 205,994,531 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,943,783 - 205,994,197 (+)EnsemblpanPan2panpan1.1
SGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,611,843 - 9,653,169 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,611,939 - 9,767,044 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3710,498,290 - 10,539,605 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0379,511,109 - 9,552,420 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl379,511,173 - 9,552,395 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1379,499,086 - 9,540,357 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0379,471,294 - 9,512,536 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0379,469,608 - 9,511,797 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sgo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936825341,283 - 373,012 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,099,384 - 104,150,720 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115104,099,378 - 104,150,723 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,371,377 - 115,424,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,019,474 - 86,075,905 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,025,030 - 86,067,458 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040113,364,364 - 113,418,131 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624889540,008 - 559,035 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624889540,680 - 563,110 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sgo2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14134,370,799 - 134,395,226 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sgo2
510 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:14
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000029526
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 64 160 89 88 57 89 57 6 342 185 11 139 76 91 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000029526   ⟹   ENSRNOP00000037361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl967,042,833 - 67,062,179 (+)Ensembl
mRatBN7.2 Ensembl959,548,683 - 59,573,229 (+)Ensembl
Rnor_6.0 Ensembl964,898,459 - 64,922,821 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,915,174 - 64,923,012 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,903,128 - 64,903,761 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164704   ⟹   ENSRNOP00000105632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl967,042,833 - 67,068,152 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172399   ⟹   ENSRNOP00000107071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl967,042,833 - 67,068,144 (+)Ensembl
RefSeq Acc Id: NM_001271191   ⟹   NP_001258120
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,044,944 - 67,067,439 (+)NCBI
mRatBN7.2959,550,731 - 59,573,229 (+)NCBI
Rnor_6.0964,900,528 - 64,923,023 (+)NCBI
Rnor_5.0964,695,921 - 64,720,561 (+)NCBI
Celera956,996,167 - 57,018,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063267191   ⟹   XP_063123261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,042,776 - 67,067,428 (+)NCBI
RefSeq Acc Id: XM_063267192   ⟹   XP_063123262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,032,083 - 67,067,428 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001258120 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123261 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123262 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99015 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037361.6
  ENSRNOP00000105632
  ENSRNOP00000105632.1
  ENSRNOP00000107071.1
RefSeq Acc Id: NP_001258120   ⟸   NM_001271191
- UniProtKB: D3ZWI4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000037361   ⟸   ENSRNOT00000029526
RefSeq Acc Id: XP_063123262   ⟸   XM_063267192
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123261   ⟸   XM_063267191
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000107071   ⟸   ENSRNOT00000172399
Ensembl Acc Id: ENSRNOP00000105632   ⟸   ENSRNOT00000164704

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWI4-F1-model_v2 AlphaFold D3ZWI4 1-1162 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696681
Promoter ID:EPDNEW_R7206
Type:initiation region
Name:Sgo2_1
Description:shugoshin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0964,898,441 - 64,898,501EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308450 AgrOrtholog
BioCyc Gene G2FUF-27465 BioCyc
Ensembl Genes ENSRNOG00000027035 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029526.8 UniProtKB/TrEMBL
  ENSRNOT00000164704 ENTREZGENE
  ENSRNOT00000164704.1 UniProtKB/TrEMBL
  ENSRNOT00000172399.1 UniProtKB/TrEMBL
InterPro Shugoshin UniProtKB/TrEMBL
KEGG Report rno:316425 UniProtKB/TrEMBL
NCBI Gene 316425 ENTREZGENE
PANTHER PTHR21577 UniProtKB/TrEMBL
  SHUGOSHIN 1-RELATED UniProtKB/TrEMBL
PhenoGen Sgo2 PhenoGen
RatGTEx ENSRNOG00000027035 RatGTEx
UniProt A0ABK0LSV3_RAT UniProtKB/TrEMBL
  A0ABK0LTV4_RAT UniProtKB/TrEMBL
  D3ZWI4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Sgo2  shugoshin 2  Sgol2  shugoshin-like 2 (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sgol2  shugoshin-like 2 (S. pombe)   Sgol2_predicted  shugoshin-like 2 (S. pombe) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sgol2_predicted  shugoshin-like 2 (S. pombe) (predicted)      Symbol and Name status set to approved 70820 APPROVED