Sgo2 (shugoshin 2) - Rat Genome Database

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Gene: Sgo2 (shugoshin 2) Ictidomys tridecemlineatus
Analyze
Symbol: Sgo2
Name: shugoshin 2
RGD ID: 12538281
Description: INVOLVED IN female meiotic nuclear division (ortholog); maintenance of meiotic sister chromatid cohesion, centromeric (ortholog); male meiotic nuclear division (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: shugoshin-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936825341,283 - 373,012 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sgo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936825341,283 - 373,012 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,526,142 - 200,584,096 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2200,510,008 - 200,584,096 (+)EnsemblGRCh38hg38GRCh38
GRCh372201,390,865 - 201,448,819 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,099,185 - 201,156,750 (+)NCBINCBI36Build 36hg18NCBI36
Build 342201,216,462 - 201,273,720NCBI
Celera2195,145,716 - 195,203,700 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,242,173 - 193,300,154 (+)NCBIHuRef
CHM1_12201,396,844 - 201,454,804 (+)NCBICHM1_1
T2T-CHM13v2.02200,993,676 - 201,067,575 (+)NCBIT2T-CHM13v2.0
Sgo2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,024,499 - 58,065,436 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,035,130 - 58,065,058 (+)EnsemblGRCm39 Ensembl
GRCm38157,985,340 - 58,026,277 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,995,971 - 58,025,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,042,184 - 58,083,121 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36157,940,612 - 57,970,443 (+)NCBIMGSCv36mm8
Celera158,499,153 - 58,539,977 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.86NCBI
Sgo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,032,083 - 67,067,439 (+)NCBIGRCr8
mRatBN7.2959,548,605 - 59,573,229 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,548,683 - 59,573,229 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,050,804 - 68,073,293 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,166,717 - 73,189,206 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,484,820 - 71,507,309 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0964,898,380 - 64,923,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,898,459 - 64,923,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,695,921 - 64,720,561 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,664,634 - 56,681,534 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1956,809,175 - 56,834,098 (+)NCBI
Celera956,996,167 - 57,018,671 (+)NCBICelera
Cytogenetic Map9q31NCBI
Sgo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955403879,354 - 905,605 (-)NCBIChiLan1.0ChiLan1.0
SGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,149,050 - 103,206,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,164,049 - 103,221,650 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B87,779,677 - 87,837,285 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B205,943,126 - 205,994,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,943,783 - 205,994,197 (+)Ensemblpanpan1.1panPan2
SGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,611,843 - 9,653,169 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,611,939 - 9,767,044 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,498,290 - 10,539,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0379,511,109 - 9,552,420 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl379,511,173 - 9,552,395 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1379,499,086 - 9,540,357 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0379,471,294 - 9,512,536 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0379,469,608 - 9,511,797 (+)NCBIUU_Cfam_GSD_1.0
SGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,099,384 - 104,150,720 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,099,378 - 104,150,723 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,371,377 - 115,424,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,019,474 - 86,075,905 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,025,030 - 86,067,458 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040113,364,364 - 113,418,131 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624889540,008 - 559,035 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624889540,680 - 563,110 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000024194   ⟹   ENSSTOP00000020086
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936825341,283 - 373,012 (-)Ensembl
RefSeq Acc Id: XM_005340867   ⟹   XP_005340924
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,654,525 - 157,686,308 (+)NCBI
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294671   ⟹   XP_040150605
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,654,525 - 157,686,308 (+)NCBI
RefSeq Acc Id: XM_040294672   ⟹   XP_040150606
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,654,672 - 157,686,308 (+)NCBI
RefSeq Acc Id: XM_040294673   ⟹   XP_040150607
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBI
RefSeq Acc Id: XM_040294674   ⟹   XP_040150608
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,661,351 - 157,686,308 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005340924 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150605 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150606 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150607 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150608 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020086.2
GenBank Protein KAG3274943 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005340924   ⟸   XM_005340867
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040150607   ⟸   XM_040294673
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150605   ⟸   XM_040294671
- Peptide Label: isoform X2
- UniProtKB: I3N6U0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040150606   ⟸   XM_040294672
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150608   ⟸   XM_040294674
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000020086   ⟸   ENSSTOT00000024194


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021808 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024194.2 UniProtKB/TrEMBL
InterPro Shugoshin UniProtKB/TrEMBL
NCBI Gene Sgo2 ENTREZGENE
PANTHER PTHR21577 UniProtKB/TrEMBL
  SHUGOSHIN 1-RELATED UniProtKB/TrEMBL
UniProt I3N6U0 ENTREZGENE, UniProtKB/TrEMBL