Hsdl1 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 19 | 64,524,435 - 64,540,527 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 19 | 64,525,891 - 64,540,762 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 19 | 47,615,794 - 47,631,892 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 19 | 47,615,796 - 47,631,846 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 19 | 54,411,623 - 54,418,476 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 19 | 55,092,500 - 55,099,330 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 19 | 57,306,144 - 57,313,010 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 19 | 52,209,403 - 52,225,486 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 19 | 52,210,859 - 52,217,728 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 19 | 62,957,885 - 62,973,686 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 19 | 49,807,247 - 49,814,030 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 19 | 46,876,394 - 46,883,153 (-) | NCBI | | Celera | | | RGSC_v3.1 | 19 | 49,812,129 - 49,818,911 (-) | NCBI | | | | | Cytogenetic Map | 19 | q12 | NCBI | | | | |
|
HSDL1 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 16 | 84,122,141 - 84,145,177 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 16 | 84,122,141 - 84,145,212 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 16 | 84,155,746 - 84,178,782 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 16 | 82,713,389 - 82,736,265 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 16 | 82,713,388 - 82,736,265 | NCBI | | | | | Celera | 16 | 68,457,660 - 68,480,593 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | q24.1 | NCBI | | | | | HuRef | 16 | 69,909,727 - 69,932,582 (-) | NCBI | | HuRef | | | CHM1_1 | 16 | 85,567,127 - 85,590,179 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 16 | 90,188,232 - 90,211,260 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
Hsdl1 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 8 | 120,288,717 - 120,301,930 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 120,288,728 - 120,301,922 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 8 | 119,561,978 - 119,575,214 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 119,561,989 - 119,575,183 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 8 | 122,085,878 - 122,099,100 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 122,447,966 - 122,461,160 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 123,779,426 - 123,792,652 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | E1 | NCBI | | | | | cM Map | 8 | 67.95 | NCBI | | | | |
|
Hsdl1 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955564 | 162,318 - 175,266 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955564 | 155,080 - 172,712 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
HSDL1 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 18 | 93,869,346 - 93,892,069 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 16 | 99,786,516 - 99,809,228 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 16 | 64,788,471 - 64,810,423 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 16 | 84,131,341 - 84,153,503 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 16 | 84,131,341 - 84,153,503 (-) | Ensembl | | | panPan2 | panpan1.1 |
|
HSDL1 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 5 | 68,206,392 - 68,226,459 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 5 | 68,213,188 - 68,225,448 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 5 | 68,219,828 - 68,240,676 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 5 | 68,503,734 - 68,524,631 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 5 | 68,503,682 - 68,524,613 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 5 | 68,451,511 - 68,472,392 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 5 | 68,287,988 - 68,308,942 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 5 | 68,703,767 - 68,724,668 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
|
Hsdl1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024409349 | 27,928,311 - 27,938,638 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936641 | 3,681,960 - 3,693,063 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936641 | 3,674,575 - 3,692,175 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
HSDL1 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 6 | 4,479,933 - 4,501,236 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 4,479,916 - 4,501,245 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 5,061,592 - 5,083,049 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
HSDL1 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 5 | 69,532,858 - 69,554,332 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 5 | 69,532,223 - 69,554,299 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666047 | 6,201,569 - 6,226,409 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Hsdl1 (Heterocephalus glaber - naked mole-rat) |
|
Hsdl1 (Rattus rattus - black rat) |
|