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Gene: Pdpr (pyruvate dehydrogenase phosphatase regulatory subunit) Rattus norvegicus

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Symbol:

Pdpr

Name:

pyruvate dehydrogenase phosphatase regulatory subunit

RGD ID:

1308307

Description:

Predicted to be active in mitochondrial matrix. Orthologous to human PDPR (pyruvate dehydrogenase phosphatase regulatory subunit); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307852; pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial; RGD1308307; similar to pyruvate dehydrogenase phosphatase regulatory subunit

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	55,974,611 - 56,019,045 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	55,974,550 - 56,019,044 (+)	Ensembl				GRCr8
mRatBN7.2	19	39,065,226 - 39,109,695 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,065,157 - 39,109,688 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	45,876,107 - 45,909,545 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	46,529,449 - 46,562,895 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	48,840,033 - 48,873,118 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,107,852 - 43,149,243 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,109,427 - 43,149,210 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	53,933,343 - 53,973,781 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	41,025,633 - 41,058,989 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,462,557 - 38,495,915 (+)	NCBI		Celera
RGSC_v3.1	19	41,030,532 - 41,063,855 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Joubert syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

5-methyl-4-oxido-2-pyrazin-4-iumcarboxylic acid (ISO)

acrolein (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

deoxynivalenol (ISO)

dicrotophos (ISO)

dioxygen (EXP)

doxorubicin (ISO)

ethanol (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

ivermectin (ISO)

manganese(II) chloride (EXP)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (ISO)

phenobarbital (ISO)

potassium cyanide (ISO)

propiconazole (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium fluoride (ISO)

Soman (EXP)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of pyruvate decarboxylation to acetyl-CoA (ISO)

Cellular Component

cytoplasm (IBA)

mitochondrial matrix (IBA,IEA)

mitochondrion (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9651365	PMID:18614015	PMID:34800366

Genomics

Comparative Map Data

Pdpr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	55,974,611 - 56,019,045 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	55,974,550 - 56,019,044 (+)	Ensembl				GRCr8
mRatBN7.2	19	39,065,226 - 39,109,695 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,065,157 - 39,109,688 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	45,876,107 - 45,909,545 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	46,529,449 - 46,562,895 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	48,840,033 - 48,873,118 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,107,852 - 43,149,243 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,109,427 - 43,149,210 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	53,933,343 - 53,973,781 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	41,025,633 - 41,058,989 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,462,557 - 38,495,915 (+)	NCBI		Celera
RGSC_v3.1	19	41,030,532 - 41,063,855 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

PDPR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	70,113,626 - 70,163,427 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	70,114,246 - 70,162,537 (+)	Ensembl			hg38	GRCh38
GRCh37	16	70,147,529 - 70,196,440 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	68,705,030 - 68,752,685 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	55,305,783 - 55,318,599 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	56,000,281 - 56,034,180 (+)	NCBI		HuRef
CHM1_1	16	71,555,144 - 71,602,818 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	75,922,058 - 75,974,584 (+)	NCBI		T2T-CHM13v2.0

Pdpr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	111,821,232 - 111,866,402 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	111,821,262 - 111,863,706 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	111,094,609 - 111,139,781 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	111,094,630 - 111,137,074 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	113,618,645 - 113,659,044 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	113,981,418 - 114,021,817 (+)	NCBI		MGSCv36	mm8
Celera	8	115,325,916 - 115,359,375 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	57.95	NCBI

Pdpr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	3,010,918 - 3,044,004 (-)	Ensembl
ChiLan1.0	NW_004955484	3,007,435 - 3,044,060 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDPR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	84,017,672 - 84,067,296 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	89,953,418 - 90,002,934 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	54,868,840 - 54,919,077 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

PDPR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	76,210,472 - 76,239,837 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	76,213,566 - 76,239,852 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	76,166,902 - 76,196,312 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	76,646,289 - 76,682,979 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	76,646,292 - 76,682,969 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	76,468,772 - 76,505,252 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	76,280,014 - 76,316,315 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	76,772,087 - 76,808,437 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pdpr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	36,215,965 - 36,257,021 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	23,332,093 - 23,373,340 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	23,332,093 - 23,373,151 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDPR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	13,187,427 - 13,227,033 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	13,187,377 - 13,230,601 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	13,272,323 - 13,289,911 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDPR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	53,296,772 - 53,341,206 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666047	16,082,058 - 16,128,130 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdpr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	12,423,917 - 12,492,966 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	12,426,081 - 12,492,966 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pdpr
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	30,792,143 - 30,835,849 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pdpr
167 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	145
Count of miRNA genes:	102
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000038452
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

RH135168

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,096,595 - 39,096,805 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,117,720 - 43,117,929	NCBI	Rnor6.0
Rnor_5.0	19	53,943,211 - 53,943,420	UniSTS	Rnor5.0
RGSC_v3.4	19	41,050,526 - 41,050,735	UniSTS	RGSC3.4
Celera	19	38,487,554 - 38,487,763	UniSTS
RH 3.4 Map	5	964.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH136833

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	55,989,570 - 55,989,716 (+)	Marker Load Pipeline
mRatBN7.2	19	39,080,211 - 39,080,357 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,134,054 - 43,134,199	NCBI	Rnor6.0
Rnor_5.0	19	53,959,545 - 53,959,690	UniSTS	Rnor5.0
RGSC_v3.4	19	41,034,145 - 41,034,290	UniSTS	RGSC3.4
Celera	19	38,471,171 - 38,471,316	UniSTS
RH 3.4 Map	19	475.1	UniSTS
Cytogenetic Map	7	q34	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038452 ⟹ ENSRNOP00000032023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	55,975,752 - 56,019,044 (+)	Ensembl
mRatBN7.2 Ensembl	19	39,066,480 - 39,106,958 (+)	Ensembl
Rnor_6.0 Ensembl	19	43,109,427 - 43,149,210 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107538 ⟹ ENSRNOP00000083707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	55,974,550 - 56,019,044 (+)	Ensembl
mRatBN7.2 Ensembl	19	39,065,157 - 39,109,688 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119660 ⟹ ENSRNOP00000080468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	55,975,448 - 56,019,044 (+)	Ensembl
mRatBN7.2 Ensembl	19	39,065,682 - 39,106,958 (+)	Ensembl

RefSeq Acc Id:

NM_001107430 ⟹ NP_001100900

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,981,059 - 56,014,415 (+)	NCBI
mRatBN7.2	19	39,071,700 - 39,105,059 (+)	NCBI
Rnor_6.0	19	43,109,466 - 43,142,711 (-)	NCBI
Rnor_5.0	19	53,933,343 - 53,973,781 (-)	NCBI
RGSC_v3.4	19	41,025,633 - 41,058,989 (+)	RGD
Celera	19	38,462,557 - 38,495,915 (+)	RGD

Sequence:

show sequence

TTGTATTTTTGGATCTTAGCTGAGTGAAAACATATATCTTCCAGGTGGTGATGCTTTACCGGTT
GCTGTCTATTGTCCAAAGACAAAGAACTAGCCCAGGATGGCAGACCTGGTCATCGGCAAGAAGC
AGCACGTCCGCTGCCGAGGCGCAGTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTG
GGGGTGGAATCATGGGTACGTCTGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGT
CCTTTTGGAGCAGGGCAGGCTGGCTGCTGGCTCAACAAGGTTCTGTGCTGGCATCCTAAGCACT
GCTAGGCATTCAAGCATTGAACAGAAGATGGCTGACTATTCAAACAAACTCTACCATCAGTTAG
AACAAGAAACAGGGATTCAAACAGGTTACTTAAGGACAGGCTCAATCTCTCTGGCCCAAACTCA
GGACCGGTTGATCTCTCTGAAGCGTATCAACTCAAGGCTGAATGTTGTAGGTATACCTTCTGAG
ATCATCTCCCCGAAGAAAGTGGCCGAACTTCATCCTCTCCTCAATGTGCATGATCTGGTGGGAG
CCATGCACGTTCCTGAGGACGCAGTAGTGTCCTCTGCTGATGTGGCTCTTGCCCTGGCAAGTGC
TGCCTCCCAGAATGGTGTTCAGATTTATGACCGGACAAGTGTTCTTCATGTACTGACCAAAAAA
GGTCGAGTTACTGGTGTGGACACAGATAAAGGGCAGATCGAATGCCAGTATTTTGTCAACTGTG
CTGGTCAGTGGGCGTATGAGCTGGGTTTGTCCAGCGAGGAGCCGGTTAGTATCCCGCTGCACGC
CTGTGAGCACTTCTACCTTCTGACTCGTCCCTGCGACGCCCCTCTGCAGAGCAGCACACCAACC
GTTGTGGATGCGGACGGAAGAATTTACATTAGGAACTGGCAGGGTGGCGTCTTGTCTGGAGGCT
TTGAGAAGAACCCAAAACCTATTTTCACTGAAGGCAAGAACCAGTTGGAAATTCAGAACCTTCG
GGAAGATTGGGATCACTTTGAGCCCCTGTTGAGTTCCCTCCTGCGCAGGATGCCAGGATTGGAG
TCTGTGGAGATTTTGAAGTTGGTGAATTGCCCTGAGACCTTCACGGCAGACATGAAGTGCATCA
TGGGCGAGTCCCCTGTCGTCCAGGGCTACTTTGTCCTGGCAGGGATGAACTCTGCTGGCCTGTC
GCTGGGCGGAGGAGCTGGAAAGCTCCTAGCTGAATGGATGGTGTATGGTTACCCCTCTGAAAAC
GTCTGGGAATTGGACTTGCAGCGCTTTGGAGCCCTCCAGGGCAGCCGCACCTTTCTGCGCCACC
GGGTCATGGAAGTTATGCCTCTGATATACGATCTGAAGGTTCCTCGTTGGGATTTCCAGACTGG
AAGGCAGTTGCGCACATCTCCTCTTTATGACCGGCTGGATGCTCAAGGAGCCAGATGGATGGAG
AAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCACCCAACAAGGACCTTCTTGCATTAGAAC
AGAGCAAGACTTTCTACAAGCCAGACTGGTTTGATATTGTGGAGTCTGAAGTCAAATGCTGTAA
GGAAGCTGTGTGTGTCATTGACATGTCTTCTTTCACAAAATTTGAAATAACTTCCACTGGGGAC
CAGGCATTAGAAAGTCTGCAGTACCTTTTCTCCAATGACCTAGATGTGCCTGTAGGCCACATTG
TTCACACTGGCATGCTCAATGAATATGGAGGGCACGAAAATGACTGCAGCATTGCTCGCCTGAC
CAAACGCAGTTTCTTCATGATCTCTCCAACTGATCAGCAGGTCCACTGTTGGGCCTGGCTTCAC
AAGTACTTGCCGAAAGACAGCAACTTGCTGCTGGAAGACGTCACCTGGAAGTACACAGCCCTCA
ATCTGATTGGCCCTCGAGCTGTGGACGTGCTGTCTGAGTTGTCCTATGCCCCTATGACTCCAGA
CCACTTTCCAACTCTCTTTTGCAAGGAGATGAGTGTGGGCTATGCAAATGGGATCCGGGTGATG
AGTATGACTCACACAGGAGAACCAGGATTCATGCTGTATATCCCCATAGAGTATGCTCTGCATG
TCTACAATGAGGTGATGAGTGTTGGACAGAAATATGGAATCCGGAATGCTGGGTATTACGCTCT
CAGAAGTCTCCGAATTGAGAAGTTTTTTGCTTTCTGGGGTCAGGACTTAAACACCCTCACCACG
CCCCTGGAATGTGGAGGAGAGTCTCGCGTGAAGTTAGAGAAGGGCATAGACTTCATCGGTCGGG
ATGCCCTGCTGCAGCAAAAGCAGACCGGGGTATATAAACGCCTCGTTATGTTTATTCTGGATGA
CCATGACACAGACCTGGACTTGTGGCCTTGGTGGGGAGAACCCATTTACCGGAACGGAAAGTAC
GCTGGCAAGACCACCAGCAGTGCCTACAGCTACACTCTTGAGCGCCATGTATGCCTGGGCTATG
TACACAACTTTTCTGAGGACAGCGGGGAAGAGCAGGTGGTGACAGCAGATTTCATCAACCGAGG
AGAATATGAGATTGACATTGCAGGACATCGGTTTCAGGCCAAGGCCAAGCTCTACCCCGTCACC
TCTTTTTTCACTCACAAGCGTAGAAAGGATGACGTGGAGCTGAGTGACTTTCATGGGAAGTAAT
GCAAGACTTTTTCCCTTCCTCCCATCCTCTCACCATGAGGAGCATCGTTCTGGGAGCTGACCTT
TCCTCTGTCCCTGTCTCCTCACTGAAGAAGGTACTTTGTCCTCTCCTAGTTTTTCTGTTTGACC
TAAACCCTTTTCCTTGAAAGCCTGTCTTCCC

hide sequence

RefSeq Acc Id:

XM_008772514 ⟹ XP_008770736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,974,611 - 56,019,045 (+)	NCBI
mRatBN7.2	19	39,065,226 - 39,109,695 (+)	NCBI
Rnor_6.0	19	43,107,852 - 43,149,243 (-)	NCBI

Sequence:

show sequence

GCGTTTGCGCGCGCGCTGGCCTTACCCTTGCCGCGGGCCGTAAAGCGCGGAAGGTCGCGGGCCC
CTGCGGTCCCGGAACTTTGCGCTCTGCGTCCCGCCCCCTCCCCATGCCCTGTCCCCTTTCCGGC
CCGCACAGACCCTCTTCAGCGGCTGTGCTGCCCTTCACTTCCGCCGGGCGTTGTTGAGCTCGCT
GCCCGCAAGTTGCGGGCCCTTGAGGTGGTGATGCTTTACCGGTTGCTGTCTATTGTCCAAAGAC
AAAGAACTAGCCCAGGATGGCAGACCTGGTCATCGGCAAGAAGCAGCACGTCCGCTGCCGAGGC
GCAGTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGGGGTGGAATCATGGGTACG
TCTGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGTCCTTTTGGAGCAGGGCAGGC
TGGCTGCTGGCTCAACAAGGTTCTGTGCTGGCATCCTAAGCACTGCTAGGCATTCAAGCATTGA
ACAGAAGATGGCTGACTATTCAAACAAACTCTACCATCAGTTAGAACAAGAAACAGGGATTCAA
ACAGGTTACTTAAGGACAGGCTCAATCTCTCTGGCCCAAACTCAGGACCGGTTGATCTCTCTGA
AGCGTATCAACTCAAGGCTGAATGTTGTAGGTATACCTTCTGAGATCATCTCCCCGAAGAAAGT
GGCCGAACTTCATCCTCTCCTCAATGTGCATGATCTGGTGGGAGCCATGCACGTTCCTGAGGAC
GCAGTAGTGTCCTCTGCTGATGTGGCTCTTGCCCTGGCAAGTGCTGCCTCCCAGAATGGTGTTC
AGATTTATGACCGGACAAGTGTTCTTCATGTACTGACCAAAAAAGGTCGAGTTACTGGTGTGGA
CACAGATAAAGGGCAGATCGAATGCCAGTATTTTGTCAACTGTGCTGGTCAGTGGGCGTATGAG
CTGGGTTTGTCCAGCGAGGAGCCGGTTAGTATCCCGCTGCACGCCTGTGAGCACTTCTACCTTC
TGACTCGTCCCTGCGACGCCCCTCTGCAGAGCAGCACACCAACCGTTGTGGATGCGGACGGAAG
AATTTACATTAGGAACTGGCAGGGTGGCGTCTTGTCTGGAGGCTTTGAGAAGAACCCAAAACCT
ATTTTCACTGAAGGCAAGAACCAGTTGGAAATTCAGAACCTTCGGGAAGATTGGGATCACTTTG
AGCCCCTGTTGAGTTCCCTCCTGCGCAGGATGCCAGGATTGGAGTCTGTGGAGATTTTGAAGTT
GGTGAATTGCCCTGAGACCTTCACGGCAGACATGAAGTGCATCATGGGCGAGTCCCCTGTCGTC
CAGGGCTACTTTGTCCTGGCAGGGATGAACTCTGCTGGCCTGTCGCTGGGCGGAGGAGCTGGAA
AGCTCCTAGCTGAATGGATGGTGTATGGTTACCCCTCTGAAAACGTCTGGGAATTGGACTTGCA
GCGCTTTGGAGCCCTCCAGGGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTTATGCCT
CTGATATACGATCTGAAGGTTCCTCGTTGGGATTTCCAGACTGGAAGGCAGTTGCGCACATCTC
CTCTTTATGACCGGCTGGATGCTCAAGGAGCCAGATGGATGGAGAAACATGGATTTGAGAGGCC
AAAGTACTTTGTTCCACCCAACAAGGACCTTCTTGCATTAGAACAGAGCAAGACTTTCTACAAG
CCAGACTGGTTTGATATTGTGGAGTCTGAAGTCAAATGCTGTAAGGAAGCTGTGTGTGTCATTG
ACATGTCTTCTTTCACAAAATTTGAAATAACTTCCACTGGGGACCAGGCATTAGAAAGTCTGCA
GTACCTTTTCTCCAATGACCTAGATGTGCCTGTAGGCCACATTGTTCACACTGGCATGCTCAAT
GAATATGGAGGGCACGAAAATGACTGCAGCATTGCTCGCCTGACCAAACGCAGTTTCTTCATGA
TCTCTCCAACTGATCAGCAGGTCCACTGTTGGGCCTGGCTTCACAAGTACTTGCCGAAAGACAG
CAACTTGCTGCTGGAAGACGTCACCTGGAAGTACACAGCCCTCAATCTGATTGGCCCTCGAGCT
GTGGACGTGCTGTCTGAGTTGTCCTATGCCCCTATGACTCCAGACCACTTTCCAACTCTCTTTT
GCAAGGAGATGAGTGTGGGCTATGCAAATGGGATCCGGGTGATGAGTATGACTCACACAGGAGA
ACCAGGATTCATGCTGTATATCCCCATAGAGTATGCTCTGCATGTCTACAATGAGGTGATGAGT
GTTGGACAGAAATATGGAATCCGGAATGCTGGGTATTACGCTCTCAGAAGTCTCCGAATTGAGA
AGTTTTTTGCTTTCTGGGGTCAGGACTTAAACACCCTCACCACGCCCCTGGAATGTGGAGGAGA
GTCTCGCGTGAAGTTAGAGAAGGGCATAGACTTCATCGGTCGGGATGCCCTGCTGCAGCAAAAG
CAGACCGGGGTATATAAACGCCTCGTTATGTTTATTCTGGATGACCATGACACAGACCTGGACT
TGTGGCCTTGGTGGGGAGAACCCATTTACCGGAACGGAAAGTACGCTGGCAAGACCACCAGCAG
TGCCTACAGCTACACTCTTGAGCGCCATGTATGCCTGGGCTATGTACACAACTTTTCTGAGGAC
AGCGGGGAAGAGCAGGTGGTGACAGCAGATTTCATCAACCGAGGAGAATATGAGATTGACATTG
CAGGACATCGGTTTCAGGCCAAGGCCAAGCTCTACCCCGTCACCTCTTTTTTCACTCACAAGCG
TAGAAAGGATGACGTGGAGCTGAGTGACTTTCATGGGAAGTAATGCAAGACTTTTTCCCTTCCT
CCCATCCTCTCACCATGAGGAGCATCGTTCTGGGAGCTGACCTTTCCTCTGTCCCTGTCTCCTC
ACTGAAGAAGGTACTTTGTCCTCTCCTAGTTTTTCTGTTTGACCTAAACCCTTTTCCTTGAAAG
CCTGTCTTCCCATTTTCGCTCATTTGCTGTTACCCCTCCTAATAGTCCAGGCTCTTCTCGTCCC
TCCAGCAGGCTCACATTCCTACAGTGGCAGGCAGAACCCACTTGTGGAGTTGTATTAAGGTGAC
AGACGGATATGTAAATTCATTGTAAGGCAAGTTGGTATTATTTAAGTCTTAGGGTAAAAATCCA
TTTCCCTTCGGCTTAGTCTTACAGAGTAACCTGTAAATATGGTAGATTATTTTGTGTCTGATGC
AGCCCTGGGAATAACTTCTCTTAACCGTGCAGACGGTTTTTGTTCCACTGTGCTGTAGGTTGCC
ACCTGTACCTCTGAACCATCTACCTCACCAATGAGAGGGGTTGTGTGGACACTGCCTGCTCTGT
GGAAGGGCGCAGTAGTTAACCTGGCATCCTGTGTTCCCCCAACTTTGTCCTTAGAGGTTTGTAC
CAGGGCAGCCTGCCTGCAGCTTTCTTTATTTCCTGCTATCTTGTATTATGATGTTTTTAGCTGA
ATACACAGGTATGCCAGTATTTGAAAGAAGAAACAAGCCATGCTGCCTTTTGTGTGGCTTTCCC
AGCAGGAGCAGTGTGAACTCCGATGCTGCTTTTCTTTCAGCTGATCATAGGTCAGCGAGCTATC
CCTTATTGATTTCCTCAGATGACTTCTAGCCTCATCTGTGCCTTGTATAGCCTGCCTACAACCT
CAACATCTGTTCTTAGCCTTTTAGAAGAGGAAGAGGGGATTGGTGGGTTGTCTTGGGTGATTAA
GTAAACCATGCTGTTCATACTGCGTTCCAGAGAGCTACCAGAGTCCCAAGCTTTACATCCCTAG
CATGAGCAAAGCCACAGACGACTACTGAGGACTGTAAGTACAGTGCAGCCGGAGACTGCTTTCT
TTTGTTTCCAGGCTCCCCACCCTTACCCCCGGAGCCCTGTCCTCAGCCTTCTTGATAGAATCTC
TGAACTGGAAAGTGAGTGGGGAAGCCACCAAGTGCACCATACATTTCAGTGCTGCCGCCCTTTT
CTTTTTGTGAGATGGTTTCACACTGGAGCTCAGGCTAGTGATCCTCTTGCTTTAGTCTCTCGAG
CACTGAGATTTCAGAAATGGTGACAGTGTTTTCTGAAGCTGAAACTTGGATGTCATGGGCTGTT
CTATATAACAACACTGAATGTTGATCTCATATACAAACTGCTGCCGTCTTTGAGAACCTTTAAT
GCTCTCAGCACTCGGGGCGCAGAGGCCAGCGGATCTTTGTAAATTCAAGGCCAGTCTGGTCTAC
AGAGTGCGTTCCAGGAGAGCCAGAAATACAGAGTAACCCTGTCTGGAAAAATCAGAAAGGAGAG
AGAGGGAGAGAGGAGAGAGGTGAGGAGAGAAGAGAGAGCAGGCCAGAGTGCAAGCGCTAGCCTT
TAATTCAACTGTGGTTCTCAGAAACCTGGAAGCATTGGTTCGCTAAATGACATTAATAGAAATC
CTTTCATTTTTTTAGAGCAGCTGAAAATTCTCAAGTGTCTGTCTTTGACATTTCTGTAGACTTG
CTCTTTTTATACATTTCTTGCTATTTTCTTCAACTAGGCCACTCCTACTTGAGATTTAATTGAT
TTATTAAAAGGACACACAATTAGAA

hide sequence

RefSeq Acc Id:

XM_017601299 ⟹ XP_017456788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,982,889 - 56,019,045 (+)	NCBI
mRatBN7.2	19	39,081,642 - 39,109,695 (+)	NCBI
Rnor_6.0	19	43,107,852 - 43,132,718 (-)	NCBI

Sequence:

show sequence

AAGCTGCCCAGACATTACTGCTTCTGCAGGACTCTTCAGTCATTCACCCGCTTACTCAAGACTG
AATGTTCTAAGAAGGTCCACTCGCCTGTGTCTAGGTTACTTAAGGACAGGCTCAATCTCTCTGG
CCCAAACTCAGGACCGGTTGATCTCTCTGAAGCGTATCAACTCAAGGCTGAATGTTGTAGGTAT
ACCTTCTGAGATCATCTCCCCGAAGAAAGTGGCCGAACTTCATCCTCTCCTCAATGTGCATGAT
CTGGTGGGAGCCATGCACGTTCCTGAGGACGCAGTAGTGTCCTCTGCTGATGTGGCTCTTGCCC
TGGCAAGTGCTGCCTCCCAGAATGGTGTTCAGATTTATGACCGGACAAGTGTTCTTCATGTACT
GACCAAAAAAGGTCGAGTTACTGGTGTGGACACAGATAAAGGGCAGATCGAATGCCAGTATTTT
GTCAACTGTGCTGGTCAGTGGGCGTATGAGCTGGGTTTGTCCAGCGAGGAGCCGGTTAGTATCC
CGCTGCACGCCTGTGAGCACTTCTACCTTCTGACTCGTCCCTGCGACGCCCCTCTGCAGAGCAG
CACACCAACCGTTGTGGATGCGGACGGAAGAATTTACATTAGGAACTGGCAGGGTGGCGTCTTG
TCTGGAGGCTTTGAGAAGAACCCAAAACCTATTTTCACTGAAGGCAAGAACCAGTTGGAAATTC
AGAACCTTCGGGAAGATTGGGATCACTTTGAGCCCCTGTTGAGTTCCCTCCTGCGCAGGATGCC
AGGATTGGAGTCTGTGGAGATTTTGAAGTTGGTGAATTGCCCTGAGACCTTCACGGCAGACATG
AAGTGCATCATGGGCGAGTCCCCTGTCGTCCAGGGCTACTTTGTCCTGGCAGGGATGAACTCTG
CTGGCCTGTCGCTGGGCGGAGGAGCTGGAAAGCTCCTAGCTGAATGGATGGTGTATGGTTACCC
CTCTGAAAACGTCTGGGAATTGGACTTGCAGCGCTTTGGAGCCCTCCAGGGCAGCCGCACCTTT
CTGCGCCACCGGGTCATGGAAGTTATGCCTCTGATATACGATCTGAAGGTTCCTCGTTGGGATT
TCCAGACTGGAAGGCAGTTGCGCACATCTCCTCTTTATGACCGGCTGGATGCTCAAGGAGCCAG
ATGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCACCCAACAAGGACCTTCTT
GCATTAGAACAGAGCAAGACTTTCTACAAGCCAGACTGGTTTGATATTGTGGAGTCTGAAGTCA
AATGCTGTAAGGAAGCTGTGTGTGTCATTGACATGTCTTCTTTCACAAAATTTGAAATAACTTC
CACTGGGGACCAGGCATTAGAAAGTCTGCAGTACCTTTTCTCCAATGACCTAGATGTGCCTGTA
GGCCACATTGTTCACACTGGCATGCTCAATGAATATGGAGGGCACGAAAATGACTGCAGCATTG
CTCGCCTGACCAAACGCAGTTTCTTCATGATCTCTCCAACTGATCAGCAGGTCCACTGTTGGGC
CTGGCTTCACAAGTACTTGCCGAAAGACAGCAACTTGCTGCTGGAAGACGTCACCTGGAAGTAC
ACAGCCCTCAATCTGATTGGCCCTCGAGCTGTGGACGTGCTGTCTGAGTTGTCCTATGCCCCTA
TGACTCCAGACCACTTTCCAACTCTCTTTTGCAAGGAGATGAGTGTGGGCTATGCAAATGGGAT
CCGGGTGATGAGTATGACTCACACAGGAGAACCAGGATTCATGCTGTATATCCCCATAGAGTAT
GCTCTGCATGTCTACAATGAGGTGATGAGTGTTGGACAGAAATATGGAATCCGGAATGCTGGGT
ATTACGCTCTCAGAAGTCTCCGAATTGAGAAGTTTTTTGCTTTCTGGGGTCAGGACTTAAACAC
CCTCACCACGCCCCTGGAATGTGGAGGAGAGTCTCGCGTGAAGTTAGAGAAGGGCATAGACTTC
ATCGGTCGGGATGCCCTGCTGCAGCAAAAGCAGACCGGGGTATATAAACGCCTCGTTATGTTTA
TTCTGGATGACCATGACACAGACCTGGACTTGTGGCCTTGGTGGGGAGAACCCATTTACCGGAA
CGGAAAGTACGCTGGCAAGACCACCAGCAGTGCCTACAGCTACACTCTTGAGCGCCATGTATGC
CTGGGCTATGTACACAACTTTTCTGAGGACAGCGGGGAAGAGCAGGTGGTGACAGCAGATTTCA
TCAACCGAGGAGAATATGAGATTGACATTGCAGGACATCGGTTTCAGGCCAAGGCCAAGCTCTA
CCCCGTCACCTCTTTTTTCACTCACAAGCGTAGAAAGGATGACGTGGAGCTGAGTGACTTTCAT
GGGAAGTAATGCAAGACTTTTTCCCTTCCTCCCATCCTCTCACCATGAGGAGCATCGTTCTGGG
AGCTGACCTTTCCTCTGTCCCTGTCTCCTCACTGAAGAAGGTACTTTGTCCTCTCCTAGTTTTT
CTGTTTGACCTAAACCCTTTTCCTTGAAAGCCTGTCTTCCCATTTTCGCTCATTTGCTGTTACC
CCTCCTAATAGTCCAGGCTCTTCTCGTCCCTCCAGCAGGCTCACATTCCTACAGTGGCAGGCAG
AACCCACTTGTGGAGTTGTATTAAGGTGACAGACGGATATGTAAATTCATTGTAAGGCAAGTTG
GTATTATTTAAGTCTTAGGGTAAAAATCCATTTCCCTTCGGCTTAGTCTTACAGAGTAACCTGT
AAATATGGTAGATTATTTTGTGTCTGATGCAGCCCTGGGAATAACTTCTCTTAACCGTGCAGAC
GGTTTTTGTTCCACTGTGCTGTAGGTTGCCACCTGTACCTCTGAACCATCTACCTCACCAATGA
GAGGGGTTGTGTGGACACTGCCTGCTCTGTGGAAGGGCGCAGTAGTTAACCTGGCATCCTGTGT
TCCCCCAACTTTGTCCTTAGAGGTTTGTACCAGGGCAGCCTGCCTGCAGCTTTCTTTATTTCCT
GCTATCTTGTATTATGATGTTTTTAGCTGAATACACAGGTATGCCAGTATTTGAAAGAAGAAAC
AAGCCATGCTGCCTTTTGTGTGGCTTTCCCAGCAGGAGCAGTGTGAACTCCGATGCTGCTTTTC
TTTCAGCTGATCATAGGTCAGCGAGCTATCCCTTATTGATTTCCTCAGATGACTTCTAGCCTCA
TCTGTGCCTTGTATAGCCTGCCTACAACCTCAACATCTGTTCTTAGCCTTTTAGAAGAGGAAGA
GGGGATTGGTGGGTTGTCTTGGGTGATTAAGTAAACCATGCTGTTCATACTGCGTTCCAGAGAG
CTACCAGAGTCCCAAGCTTTACATCCCTAGCATGAGCAAAGCCACAGACGACTACTGAGGACTG
TAAGTACAGTGCAGCCGGAGACTGCTTTCTTTTGTTTCCAGGCTCCCCACCCTTACCCCCGGAG
CCCTGTCCTCAGCCTTCTTGATAGAATCTCTGAACTGGAAAGTGAGTGGGGAAGCCACCAAGTG
CACCATACATTTCAGTGCTGCCGCCCTTTTCTTTTTGTGAGATGGTTTCACACTGGAGCTCAGG
CTAGTGATCCTCTTGCTTTAGTCTCTCGAGCACTGAGATTTCAGAAATGGTGACAGTGTTTTCT
GAAGCTGAAACTTGGATGTCATGGGCTGTTCTATATAACAACACTGAATGTTGATCTCATATAC
AAACTGCTGCCGTCTTTGAGAACCTTTAATGCTCTCAGCACTCGGGGCGCAGAGGCCAGCGGAT
CTTTGTAAATTCAAGGCCAGTCTGGTCTACAGAGTGCGTTCCAGGAGAGCCAGAAATACAGAGT
AACCCTGTCTGGAAAAATCAGAAAGGAGAGAGAGGGAGAGAGGAGAGAGGTGAGGAGAGAAGAG
AGAGCAGGCCAGAGTGCAAGCGCTAGCCTTTAATTCAACTGTGGTTCTCAGAAACCTGGAAGCA
TTGGTTCGCTAAATGACATTAATAGAAATCCTTTCATTTTTTTAGAGCAGCTGAAAATTCTCAA
GTGTCTGTCTTTGACATTTCTGTAGACTTGCTCTTTTTATACATTTCTTGCTATTTTCTTCAAC
TAGGCCACTCCTACTTGAGATTTAATTGATTTATTAAAAGGACACACAATTAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100900	(Get FASTA)	NCBI Sequence Viewer
	XP_008770736	(Get FASTA)	NCBI Sequence Viewer
	XP_017456788	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92561	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032023.5
	ENSRNOP00000080468.1
	ENSRNOP00000083707
	ENSRNOP00000083707.2

RefSeq Acc Id:

NP_001100900 ⟸ NM_001107430

- UniProtKB:

D3ZXA6 (UniProtKB/TrEMBL), A6IZ83 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLYRLLSIVQRQRTSPGWQTWSSARSSTSAAEAQSIALPAQAQVVICGGGIMGTSVAYHLSKMG
WQDIVLLEQGRLAAGSTRFCAGILSTARHSSIEQKMADYSNKLYHQLEQETGIQTGYLRTGSIS
LAQTQDRLISLKRINSRLNVVGIPSEIISPKKVAELHPLLNVHDLVGAMHVPEDAVVSSADVAL
ALASAASQNGVQIYDRTSVLHVLTKKGRVTGVDTDKGQIECQYFVNCAGQWAYELGLSSEEPVS
IPLHACEHFYLLTRPCDAPLQSSTPTVVDADGRIYIRNWQGGVLSGGFEKNPKPIFTEGKNQLE
IQNLREDWDHFEPLLSSLLRRMPGLESVEILKLVNCPETFTADMKCIMGESPVVQGYFVLAGMN
SAGLSLGGGAGKLLAEWMVYGYPSENVWELDLQRFGALQGSRTFLRHRVMEVMPLIYDLKVPRW
DFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPNKDLLALEQSKTFYKPDWFDIVESE
VKCCKEAVCVIDMSSFTKFEITSTGDQALESLQYLFSNDLDVPVGHIVHTGMLNEYGGHENDCS
IARLTKRSFFMISPTDQQVHCWAWLHKYLPKDSNLLLEDVTWKYTALNLIGPRAVDVLSELSYA
PMTPDHFPTLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNA
GYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGIDFIGRDALLQQKQTGVYKRLVM
FILDDHDTDLDLWPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVHNFSEDSGEEQVVTAD
FINRGEYEIDIAGHRFQAKAKLYPVTSFFTHKRRKDDVELSDFHGK

hide sequence

RefSeq Acc Id:

XP_008770736 ⟸ XM_008772514

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLYRLLSIVQRQRTSPGWQTWSSARSSTSAAEAQSIALPAQAQVVICGGGIMGTSVAYHLSKMG
WQDIVLLEQGRLAAGSTRFCAGILSTARHSSIEQKMADYSNKLYHQLEQETGIQTGYLRTGSIS
LAQTQDRLISLKRINSRLNVVGIPSEIISPKKVAELHPLLNVHDLVGAMHVPEDAVVSSADVAL
ALASAASQNGVQIYDRTSVLHVLTKKGRVTGVDTDKGQIECQYFVNCAGQWAYELGLSSEEPVS
IPLHACEHFYLLTRPCDAPLQSSTPTVVDADGRIYIRNWQGGVLSGGFEKNPKPIFTEGKNQLE
IQNLREDWDHFEPLLSSLLRRMPGLESVEILKLVNCPETFTADMKCIMGESPVVQGYFVLAGMN
SAGLSLGGGAGKLLAEWMVYGYPSENVWELDLQRFGALQGSRTFLRHRVMEVMPLIYDLKVPRW
DFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPNKDLLALEQSKTFYKPDWFDIVESE
VKCCKEAVCVIDMSSFTKFEITSTGDQALESLQYLFSNDLDVPVGHIVHTGMLNEYGGHENDCS
IARLTKRSFFMISPTDQQVHCWAWLHKYLPKDSNLLLEDVTWKYTALNLIGPRAVDVLSELSYA
PMTPDHFPTLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNA
GYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGIDFIGRDALLQQKQTGVYKRLVM
FILDDHDTDLDLWPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVHNFSEDSGEEQVVTAD
FINRGEYEIDIAGHRFQAKAKLYPVTSFFTHKRRKDDVELSDFHGK

hide sequence

RefSeq Acc Id:

XP_017456788 ⟸ XM_017601299

- Peptide Label:

isoform X2

- Sequence:

show sequence

MHVPEDAVVSSADVALALASAASQNGVQIYDRTSVLHVLTKKGRVTGVDTDKGQIECQYFVNCA
GQWAYELGLSSEEPVSIPLHACEHFYLLTRPCDAPLQSSTPTVVDADGRIYIRNWQGGVLSGGF
EKNPKPIFTEGKNQLEIQNLREDWDHFEPLLSSLLRRMPGLESVEILKLVNCPETFTADMKCIM
GESPVVQGYFVLAGMNSAGLSLGGGAGKLLAEWMVYGYPSENVWELDLQRFGALQGSRTFLRHR
VMEVMPLIYDLKVPRWDFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPNKDLLALEQ
SKTFYKPDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALESLQYLFSNDLDVPVGHIV
HTGMLNEYGGHENDCSIARLTKRSFFMISPTDQQVHCWAWLHKYLPKDSNLLLEDVTWKYTALN
LIGPRAVDVLSELSYAPMTPDHFPTLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHV
YNEVMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGIDFIGRD
ALLQQKQTGVYKRLVMFILDDHDTDLDLWPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYV
HNFSEDSGEEQVVTADFINRGEYEIDIAGHRFQAKAKLYPVTSFFTHKRRKDDVELSDFHGK

hide sequence

Ensembl Acc Id:

ENSRNOP00000032023 ⟸ ENSRNOT00000038452

Ensembl Acc Id:

ENSRNOP00000083707 ⟸ ENSRNOT00000107538

Ensembl Acc Id:

ENSRNOP00000080468 ⟸ ENSRNOT00000119660

Protein Domains

Aminomethyltransferase C-terminal Aminomethyltransferase folate-binding FAD dependent oxidoreductase FAD dependent oxidoreductase central

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZXA6-F1-model_v2	AlphaFold	D3ZXA6	1-878	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701138

Promoter ID:

EPDNEW_R11662

Type:

single initiation site

Name:

Pdpr_1

Description:

pyruvate dehydrogenase phosphatase regulatory subunit

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	43,149,220 - 43,149,280	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308307	AgrOrtholog
BioCyc Gene	G2FUF-5659	BioCyc
Ensembl Genes	ENSRNOG00000022593	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038452.8	UniProtKB/TrEMBL
	ENSRNOT00000107538	ENTREZGENE
	ENSRNOT00000107538.2	UniProtKB/TrEMBL
	ENSRNOT00000119660.2	UniProtKB/TrEMBL
Gene3D-CATH	3.50.50.60	UniProtKB/TrEMBL
	Aminomethyltransferase beta-barrel domains	UniProtKB/TrEMBL
	Aminomethyltransferase beta-barrel domains	UniProtKB/TrEMBL
	D-Amino Acid Oxidase, subunit A, domain 2	UniProtKB/TrEMBL
	Probable tRNA modification gtpase trme, domain 1	UniProtKB/TrEMBL
InterPro	FAD-dep_OxRdtase	UniProtKB/TrEMBL
	FAD/NAD-bd_sf	UniProtKB/TrEMBL
	FAO_M	UniProtKB/TrEMBL
	GCV_T_C	UniProtKB/TrEMBL
	GCV_T_N	UniProtKB/TrEMBL
	GcvT/YgfZ_C	UniProtKB/TrEMBL
	TrmE/GcvT_dom1	UniProtKB/TrEMBL
KEGG Report	rno:307852	UniProtKB/TrEMBL
NCBI Gene	307852	ENTREZGENE
PANTHER	PYRUVATE DEHYDROGENASE PHOSPHATASE REGULATORY SUBUNIT, MITOCHONDRIAL	UniProtKB/TrEMBL
	SARCOSINE DEHYDROGENASE-RELATED	UniProtKB/TrEMBL
Pfam	DAO	UniProtKB/TrEMBL
	FAO_M	UniProtKB/TrEMBL
	GCV_T	UniProtKB/TrEMBL
	GCV_T_C	UniProtKB/TrEMBL
PhenoGen	Pdpr	PhenoGen
RatGTEx	ENSRNOG00000022593	RatGTEx
Superfamily-SCOP	FAD-linked reductases, C-terminal domain	UniProtKB/TrEMBL
	Folate-binding domain	UniProtKB/TrEMBL
	SSF101790	UniProtKB/TrEMBL
	SSF51905	UniProtKB/TrEMBL
UniProt	A0A8I5ZQQ3_RAT	UniProtKB/TrEMBL
	A0A8I5ZVU4_RAT	UniProtKB/TrEMBL
	A6IZ83	ENTREZGENE, UniProtKB/TrEMBL
	D3ZXA6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-26	Pdpr	pyruvate dehydrogenase phosphatase regulatory subunit	RGD1308307_predicted	similar to pyruvate dehydrogenase phosphatase regulatory subunit (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1308307_predicted	similar to pyruvate dehydrogenase phosphatase regulatory subunit (predicted)	LOC307852_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307852_predicted	similar to pyruvate dehydrogenase phosphatase regulatory subunit (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar