Veph1 (ventricular zone expressed PH domain-containing 1) - Rat Genome Database

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Gene: Veph1 (ventricular zone expressed PH domain-containing 1) Rattus norvegicus
Analyze
Symbol: Veph1
Name: ventricular zone expressed PH domain-containing 1
RGD ID: 1308217
Description: Predicted to enable phosphatidylinositol-5-phosphate binding activity. Predicted to be involved in negative regulation of SMAD protein signal transduction and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human VEPH1 (ventricular zone expressed PH domain containing 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361954; protein melted homolog; RGD1308217; similar to Veph-A; ventricular zone expressed PH domain homolog 1; ventricular zone expressed PH domain homolog 1 (zebrafish); ventricular zone-expressed PH domain-containing protein homolog 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82152,592,648 - 152,847,566 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2152,601,680 - 152,847,318 (-)EnsemblGRCr8
mRatBN7.22150,291,379 - 150,537,491 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2150,296,573 - 150,537,266 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2157,399,075 - 157,649,254 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02155,449,579 - 155,699,773 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02150,082,302 - 150,332,485 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02157,869,383 - 158,156,266 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2157,869,392 - 158,156,444 (-)Ensemblrn6Rnor6.0
Rnor_5.02177,231,517 - 177,349,691 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.02177,389,298 - 177,513,886 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42155,875,542 - 156,139,651 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2144,707,077 - 144,944,652 (-)NCBICelera
RGSC_v3.12155,918,298 - 156,089,614 (-)NCBI
Cytogenetic Map2q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-palmitoylglycerol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (EXP)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP,ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroethene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
diarsenic trioxide  (ISO)
dichloroacetic acid  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
fenvalerate  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
methimazole  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
permethrin  (EXP)
pyrethrins  (EXP)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trametinib  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:26039994  


Genomics

Comparative Map Data
Veph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82152,592,648 - 152,847,566 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2152,601,680 - 152,847,318 (-)EnsemblGRCr8
mRatBN7.22150,291,379 - 150,537,491 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2150,296,573 - 150,537,266 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2157,399,075 - 157,649,254 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02155,449,579 - 155,699,773 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02150,082,302 - 150,332,485 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02157,869,383 - 158,156,266 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2157,869,392 - 158,156,444 (-)Ensemblrn6Rnor6.0
Rnor_5.02177,231,517 - 177,349,691 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.02177,389,298 - 177,513,886 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42155,875,542 - 156,139,651 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2144,707,077 - 144,944,652 (-)NCBICelera
RGSC_v3.12155,918,298 - 156,089,614 (-)NCBI
Cytogenetic Map2q31NCBI
VEPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383157,259,742 - 157,503,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3157,259,742 - 157,533,619 (-)Ensemblhg38GRCh38
GRCh373156,977,531 - 157,221,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363158,461,392 - 158,700,037 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343158,461,399 - 158,700,045NCBI
Celera3155,401,211 - 155,645,090 (-)NCBICelera
Cytogenetic Map3q25.31-q25.32NCBI
HuRef3154,373,805 - 154,617,529 (-)NCBIHuRef
CHM1_13156,940,518 - 157,184,419 (-)NCBICHM1_1
T2T-CHM13v2.03160,034,311 - 160,278,175 (-)NCBIT2T-CHM13v2.0
Veph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39365,960,979 - 66,204,370 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl365,960,979 - 66,204,258 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38366,053,558 - 66,296,974 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl366,053,558 - 66,296,837 (-)Ensemblmm10GRCm38
MGSCv37365,858,748 - 66,100,741 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36366,144,564 - 66,384,748 (-)NCBIMGSCv36mm8
Celera366,192,602 - 66,439,070 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.25NCBI
Veph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554488,207,272 - 8,423,861 (-)Ensembl
ChiLan1.0NW_0049554488,207,272 - 8,423,712 (-)NCBIChiLan1.0ChiLan1.0
VEPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,170,734 - 155,445,288 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13155,173,458 - 155,415,264 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03154,308,573 - 154,552,029 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13162,360,973 - 162,604,113 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3162,357,876 - 162,604,358 (-)EnsemblpanPan2panpan1.1
VEPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12350,779,456 - 51,002,681 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2350,773,610 - 51,003,043 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2350,653,638 - 50,875,333 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02351,414,831 - 51,637,376 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2351,404,810 - 51,637,424 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12350,998,975 - 51,217,879 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02351,050,238 - 51,270,605 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02351,335,352 - 51,557,909 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Veph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560285,374,332 - 85,591,589 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365194,143,399 - 4,353,702 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365194,143,036 - 4,359,329 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VEPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1397,075,270 - 97,366,031 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11396,986,322 - 97,366,206 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213105,237,282 - 105,490,179 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VEPH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11533,259,910 - 33,495,480 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1533,263,976 - 33,496,805 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660415,837,388 - 6,073,300 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Veph1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473034,890,821 - 35,192,758 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473034,890,732 - 35,193,376 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Veph1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1388,895,609 - 89,669,064 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Veph1
2049 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:48
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000016621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2124103798154505346Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2120039407159440891Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2139067258184067258Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2120339555165339555Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
631520Bp73Blood pressure QTL 730.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149806826170653323Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)2114440891159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2116804572161804572Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2145807215173074435Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat

Markers in Region
D2Mit10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22150,341,585 - 150,341,684 (+)MAPPERmRatBN7.2
Rnor_6.02157,914,311 - 157,914,409NCBIRnor6.0
Rnor_5.02177,277,106 - 177,277,204UniSTSRnor5.0
RGSC_v3.42155,920,709 - 155,920,808RGDRGSC3.4
RGSC_v3.42155,920,710 - 155,920,808UniSTSRGSC3.4
Celera2144,750,519 - 144,750,617UniSTS
RGSC_v3.12155,870,673 - 155,870,771RGD
RH 3.4 Map2970.7UniSTS
RH 3.4 Map2970.7RGD
RH 2.0 Map2705.1RGD
Cytogenetic Map2q31UniSTS
D2Got108  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82152,651,609 - 152,651,740 (+)Marker Load Pipeline
mRatBN7.22150,341,552 - 150,341,682 (+)MAPPERmRatBN7.2
Rnor_6.02157,914,278 - 157,914,407NCBIRnor6.0
Rnor_5.02177,277,073 - 177,277,202UniSTSRnor5.0
RGSC_v3.42155,920,676 - 155,920,806RGDRGSC3.4
RGSC_v3.42155,920,677 - 155,920,806UniSTSRGSC3.4
Celera2144,750,486 - 144,750,615UniSTS
RGSC_v3.12155,870,639 - 155,870,769RGD
RH 3.4 Map2974.8UniSTS
RH 3.4 Map2974.8RGD
Cytogenetic Map2q31UniSTS
WI-7070  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22150,492,709 - 150,493,058 (+)MAPPERmRatBN7.2
Rnor_6.02158,103,040 - 158,103,388NCBIRnor6.0
Rnor_5.02177,462,460 - 177,462,808UniSTSRnor5.0
RGSC_v3.42156,095,114 - 156,095,461UniSTSRGSC3.4
Celera2144,900,143 - 144,900,490UniSTS
Cytogenetic Map2q31UniSTS
RH132958  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22150,296,614 - 150,296,807 (+)MAPPERmRatBN7.2
Rnor_6.02157,869,433 - 157,869,625NCBIRnor6.0
Rnor_5.02177,231,559 - 177,231,751UniSTSRnor5.0
RGSC_v3.42155,875,584 - 155,875,776UniSTSRGSC3.4
Celera2144,707,119 - 144,707,311UniSTS
RH 3.4 Map2983.4UniSTS
Cytogenetic Map2q31UniSTS
BF387681  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22150,487,923 - 150,488,105 (+)MAPPERmRatBN7.2
Rnor_6.02158,098,254 - 158,098,435NCBIRnor6.0
Rnor_5.02177,457,674 - 177,457,855UniSTSRnor5.0
RGSC_v3.42156,090,328 - 156,090,509UniSTSRGSC3.4
Celera2144,895,357 - 144,895,538UniSTS
RH 3.4 Map2981.0UniSTS
Cytogenetic Map2q31UniSTS
Ptx3  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82152,802,757 - 152,803,300 (+)Marker Load Pipeline
mRatBN7.22150,492,708 - 150,493,251 (+)MAPPERmRatBN7.2
Rnor_6.02158,103,039 - 158,103,581NCBIRnor6.0
Rnor_5.02177,462,459 - 177,463,001UniSTSRnor5.0
RGSC_v3.42156,095,113 - 156,095,654UniSTSRGSC3.4
Celera2144,900,142 - 144,900,683UniSTS
Cytogenetic Map2q31UniSTS
AU048404  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22150,526,595 - 150,527,094 (+)MAPPERmRatBN7.2
Rnor_6.02158,145,262 - 158,145,760NCBIRnor6.0
Rnor_5.02177,502,998 - 177,503,496UniSTSRnor5.0
RGSC_v3.42156,128,982 - 156,129,480UniSTSRGSC3.4
Celera2144,933,983 - 144,934,481UniSTS
Cytogenetic Map2q31UniSTS
PMC304098P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22150,492,367 - 150,492,475 (+)MAPPERmRatBN7.2
Rnor_6.02158,102,698 - 158,102,805NCBIRnor6.0
Rnor_5.02177,462,118 - 177,462,225UniSTSRnor5.0
RGSC_v3.42156,094,772 - 156,094,879UniSTSRGSC3.4
Celera2144,899,801 - 144,899,908UniSTS
Cytogenetic Map2q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 11 67 145 90 89 59 25 59 6 284 124 11 123 81 92 30 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000016621   ⟹   ENSRNOP00000016621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2152,606,413 - 152,847,318 (-)Ensembl
mRatBN7.2 Ensembl2150,296,574 - 150,537,266 (-)Ensembl
Rnor_6.0 Ensembl2157,869,392 - 158,156,150 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088559   ⟹   ENSRNOP00000073921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2152,601,680 - 152,847,318 (-)Ensembl
mRatBN7.2 Ensembl2150,296,573 - 150,533,204 (-)Ensembl
Rnor_6.0 Ensembl2157,869,482 - 158,156,444 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090700   ⟹   ENSRNOP00000071650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2157,869,681 - 158,133,861 (-)Ensembl
RefSeq Acc Id: NM_001014171   ⟹   NP_001014193
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,606,630 - 152,847,318 (-)NCBI
mRatBN7.22150,296,573 - 150,537,266 (-)NCBI
Rnor_6.02157,869,391 - 158,156,150 (-)NCBI
Rnor_5.02177,231,517 - 177,349,691 (-)NCBI
Rnor_5.02177,389,298 - 177,513,886 (-)NCBI
RGSC_v3.42155,875,542 - 156,139,651 (-)RGD
Celera2144,707,077 - 144,944,652 (-)RGD
Sequence:
RefSeq Acc Id: XM_008761051   ⟹   XP_008759273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,592,648 - 152,847,566 (-)NCBI
mRatBN7.22150,293,477 - 150,537,489 (-)NCBI
Rnor_6.02157,869,383 - 158,156,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102622   ⟹   XP_038958550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,592,648 - 152,843,406 (-)NCBI
mRatBN7.22150,293,477 - 150,533,360 (-)NCBI
RefSeq Acc Id: XM_039102623   ⟹   XP_038958551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,592,648 - 152,843,474 (-)NCBI
mRatBN7.22150,293,477 - 150,533,360 (-)NCBI
RefSeq Acc Id: XM_039102624   ⟹   XP_038958552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,592,648 - 152,847,564 (-)NCBI
mRatBN7.22150,293,477 - 150,537,489 (-)NCBI
RefSeq Acc Id: XM_039102626   ⟹   XP_038958554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,592,648 - 152,824,068 (-)NCBI
mRatBN7.22150,293,477 - 150,514,010 (-)NCBI
RefSeq Acc Id: XM_039102627   ⟹   XP_038958555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,592,648 - 152,736,047 (-)NCBI
mRatBN7.22150,293,477 - 150,437,579 (-)NCBI
RefSeq Acc Id: XM_039102628   ⟹   XP_038958556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82152,736,032 - 152,847,540 (-)NCBI
mRatBN7.22150,414,223 - 150,537,491 (-)NCBI
RefSeq Acc Id: NP_001014193   ⟸   NM_001014171
- UniProtKB: Q5PQS3 (UniProtKB/Swiss-Prot),   A6J5K5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759273   ⟸   XM_008761051
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6S2 (UniProtKB/TrEMBL),   A6J5K5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016621   ⟸   ENSRNOT00000016621
Ensembl Acc Id: ENSRNOP00000071650   ⟸   ENSRNOT00000090700
Ensembl Acc Id: ENSRNOP00000073921   ⟸   ENSRNOT00000088559
RefSeq Acc Id: XP_038958552   ⟸   XM_039102624
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6S2 (UniProtKB/TrEMBL),   A6J5K5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958551   ⟸   XM_039102623
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6S2 (UniProtKB/TrEMBL),   A6J5K5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958550   ⟸   XM_039102622
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6S2 (UniProtKB/TrEMBL),   A6J5K5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958554   ⟸   XM_039102626
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958555   ⟸   XM_039102627
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958556   ⟸   XM_039102628
- Peptide Label: isoform X4
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQS3-F1-model_v2 AlphaFold Q5PQS3 1-832 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308217 AgrOrtholog
BioCyc Gene G2FUF-52879 BioCyc
Ensembl Genes ENSRNOG00000012427 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000016621 ENTREZGENE
  ENSRNOT00000016621.7 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7123921 IMAGE-MGC_LOAD
InterPro ARM-type_fold UniProtKB/Swiss-Prot
  Melted-like UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
KEGG Report rno:361954 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94066 IMAGE-MGC_LOAD
NCBI Gene 361954 ENTREZGENE
PANTHER PTHR21630 UniProtKB/Swiss-Prot
  VENTRICULAR ZONE-EXPRESSED PH DOMAIN-CONTAINING PROTEIN HOMOLOG 1 UniProtKB/Swiss-Prot
Pfam PF00169 UniProtKB/Swiss-Prot
PhenoGen Veph1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012427 RatGTEx
SMART SM00233 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF48371 UniProtKB/Swiss-Prot
UniProt A0A0G2K6S2 ENTREZGENE, UniProtKB/TrEMBL
  A6J5K5 ENTREZGENE, UniProtKB/TrEMBL
  MELT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-18 Veph1  ventricular zone expressed PH domain-containing 1  Veph1  ventricular zone expressed PH domain homolog 1 (zebrafish)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Veph1  ventricular zone expressed PH domain homolog 1 (zebrafish)  RGD1308217  similar to Veph-A  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1308217  similar to Veph-A  RGD1308217_predicted  similar to Veph-A (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308217_predicted  similar to Veph-A (predicted)  LOC361954_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361954_predicted  similar to Veph-A (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL