Rnf213 (ring finger protein 213) - Rat Genome Database

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Gene: Rnf213 (ring finger protein 213) Rattus norvegicus
Analyze
Symbol: Rnf213
Name: ring finger protein 213
RGD ID: 1308168
Description: Predicted to enable ATP hydrolysis activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including defense response to other organism; lipid droplet formation; and protein ubiquitination. Predicted to be located in cytoplasm and lipid droplet. Predicted to be active in cytosol and nucleolus. Human ortholog(s) of this gene implicated in Moyamoya disease. Orthologous to human RNF213 (ring finger protein 213); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase RNF213; LOC303735; protein ALO17; RGD1308168; similar to chromosome 17 open reading frame 27
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,154,873 - 105,254,148 (+)NCBIGRCr8
mRatBN7.210104,656,329 - 104,755,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,656,883 - 104,757,918 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010108,527,351 - 108,626,372 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,527,740 - 108,624,688 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010108,134,305 - 108,230,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,765,490 - 108,862,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110108,778,807 - 108,875,755 (+)NCBI
Celera10103,204,438 - 103,300,991 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
7,12-dimethyltetraphene  (ISO)
aconitine  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
dextran sulfate  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
inulin  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
Triptolide  (EXP)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,ISO)
lipid droplet  (ISO)
membrane  (IEA)
nucleolus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:19028597   PMID:19946888   PMID:21799892   PMID:24658080   PMID:26126547   PMID:26278786   PMID:26766444   PMID:28734662   PMID:37482037  


Genomics

Comparative Map Data
Rnf213
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,154,873 - 105,254,148 (+)NCBIGRCr8
mRatBN7.210104,656,329 - 104,755,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,656,883 - 104,757,918 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010108,527,351 - 108,626,372 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,527,740 - 108,624,688 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010108,134,305 - 108,230,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,765,490 - 108,862,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110108,778,807 - 108,875,755 (+)NCBI
Celera10103,204,438 - 103,300,991 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
RNF213
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381780,260,852 - 80,398,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1780,260,852 - 80,398,794 (+)EnsemblGRCh38hg38GRCh38
GRCh371778,234,651 - 78,372,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361775,928,321 - 75,984,681 (+)NCBINCBI36Build 36hg18NCBI36
Celera1774,864,699 - 74,998,227 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1773,676,973 - 73,810,563 (+)NCBIHuRef
CHM1_11778,320,628 - 78,458,825 (+)NCBICHM1_1
T2T-CHM13v2.01781,161,115 - 81,300,623 (+)NCBIT2T-CHM13v2.0
Rnf213
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,280,778 - 119,378,245 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,283,926 - 119,378,244 (+)EnsemblGRCm39 Ensembl
GRCm3811119,389,950 - 119,487,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,393,100 - 119,487,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,254,414 - 119,348,739 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,342,115 - 119,348,729 (+)NCBIMGSCv36mm8
Celera11131,141,037 - 131,235,450 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.48NCBI
Rnf213
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555062,499,770 - 2,596,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555062,498,339 - 2,598,363 (-)NCBIChiLan1.0ChiLan1.0
RNF213
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21996,840,037 - 96,976,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117101,739,813 - 101,874,913 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01774,688,130 - 74,823,973 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11780,421,373 - 80,556,570 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1780,421,373 - 80,556,570 (+)Ensemblpanpan1.1panPan2
RNF213
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,439,061 - 1,506,658 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,440,364 - 1,506,951 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,056,478 - 2,154,125 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.092,048,400 - 2,146,573 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl92,047,972 - 2,145,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.192,071,964 - 2,170,024 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.092,197,505 - 2,295,458 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.092,278,468 - 2,376,800 (-)NCBIUU_Cfam_GSD_1.0
Rnf213
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056022,082,963 - 2,171,115 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365944,241,396 - 4,331,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365944,241,006 - 4,331,841 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF213
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11672,241,519 - 72,370,710 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1672,244,245 - 72,369,859 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607743,548,858 - 43,678,882 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf213
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248019,472,891 - 9,574,511 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf213
516 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:38
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000044983
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat

Markers in Region
D10Rat135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210104,670,657 - 104,670,812 (+)MAPPERmRatBN7.2
Rnor_6.010108,540,008 - 108,540,162NCBIRnor6.0
Rnor_5.010108,145,833 - 108,145,987UniSTSRnor5.0
RGSC_v3.410108,776,808 - 108,776,963RGDRGSC3.4
RGSC_v3.410108,776,809 - 108,776,963UniSTSRGSC3.4
RGSC_v3.110108,791,287 - 108,791,662RGD
Celera10103,216,256 - 103,216,410UniSTS
RH 2.0 Map101397.5RGD
SHRSP x BN Map1094.1199RGD
Cytogenetic Map10q32.3UniSTS
RH128310  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210104,754,450 - 104,754,658 (+)MAPPERmRatBN7.2
Rnor_6.010108,625,154 - 108,625,361NCBIRnor6.0
Rnor_5.010108,229,506 - 108,229,713UniSTSRnor5.0
RGSC_v3.410108,861,717 - 108,861,924UniSTSRGSC3.4
Celera10103,299,773 - 103,299,980UniSTS
Cytogenetic Map10q32.3UniSTS
RH143345  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210104,738,256 - 104,738,356 (+)MAPPERmRatBN7.2
Rnor_6.010108,608,688 - 108,608,787NCBIRnor6.0
Rnor_5.010108,213,040 - 108,213,139UniSTSRnor5.0
RGSC_v3.410108,845,525 - 108,845,624UniSTSRGSC3.4
Celera10103,283,576 - 103,283,675UniSTS
Cytogenetic Map10q32.3UniSTS
RH139717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210104,755,380 - 104,755,597 (+)MAPPERmRatBN7.2
Rnor_6.010108,626,084 - 108,626,300NCBIRnor6.0
Rnor_5.010108,230,436 - 108,230,652UniSTSRnor5.0
RGSC_v3.410108,862,647 - 108,862,863UniSTSRGSC3.4
Celera10103,300,703 - 103,300,919UniSTS
Cytogenetic Map10q32.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7 28 12 19 12 8 19 11
Low 3 30 29 29 29 8 11 58 27 21 8
Below cutoff 6 16 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044983   ⟹   ENSRNOP00000049006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10104,656,883 - 104,757,918 (+)Ensembl
Rnor_6.0 Ensembl10108,527,740 - 108,624,688 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109296   ⟹   ENSRNOP00000095018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10104,656,883 - 104,757,918 (+)Ensembl
RefSeq Acc Id: NM_001427681   ⟹   NP_001414610
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,154,985 - 105,254,148 (+)NCBI
RefSeq Acc Id: XM_039087541   ⟹   XP_038943469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,154,873 - 105,254,148 (+)NCBI
mRatBN7.210104,656,336 - 104,755,669 (+)NCBI
RefSeq Acc Id: XM_039087542   ⟹   XP_038943470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,154,873 - 105,254,148 (+)NCBI
mRatBN7.210104,656,336 - 104,755,669 (+)NCBI
RefSeq Acc Id: XM_039087543   ⟹   XP_038943471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,154,873 - 105,254,148 (+)NCBI
mRatBN7.210104,656,336 - 104,755,669 (+)NCBI
RefSeq Acc Id: XM_063269247   ⟹   XP_063125317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,155,504 - 105,254,148 (+)NCBI
RefSeq Acc Id: XR_005490583
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,154,873 - 105,216,301 (+)NCBI
mRatBN7.210104,656,329 - 104,717,815 (+)NCBI
RefSeq Acc Id: XR_005490584
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,154,873 - 105,216,301 (+)NCBI
mRatBN7.210104,656,329 - 104,717,815 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000049006   ⟸   ENSRNOT00000044983
RefSeq Acc Id: XP_038943469   ⟸   XM_039087541
- Peptide Label: isoform X1
- UniProtKB: F1M0R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943470   ⟸   XM_039087542
- Peptide Label: isoform X2
- UniProtKB: F1M0R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943471   ⟸   XM_039087543
- Peptide Label: isoform X3
- UniProtKB: F1M0R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000095018   ⟸   ENSRNOT00000109296
RefSeq Acc Id: NP_001414610   ⟸   NM_001427681
- UniProtKB: A0A8I6AKP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125317   ⟸   XM_063269247
- Peptide Label: isoform X1
Protein Domains
RING-type   RZ-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697953
Promoter ID:EPDNEW_R8469
Type:single initiation site
Name:Rnf213_1
Description:ring finger protein 213
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010108,527,712 - 108,527,772EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308168 AgrOrtholog
BioCyc Gene G2FUF-22489 BioCyc
Ensembl Genes ENSRNOG00000029658 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044983.6 UniProtKB/TrEMBL
  ENSRNOT00000109296.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNF213 UniProtKB/TrEMBL
  ZF_RZ_dom UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 303735 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF213 UniProtKB/TrEMBL
  PTHR22605 UniProtKB/TrEMBL
Pfam DUF6539 UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PhenoGen Rnf213 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
  ZF_RZ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029658 RatGTEx
SMART AAA UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6AKP6 ENTREZGENE, UniProtKB/TrEMBL
  F1M0R1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-16 Rnf213  ring finger protein 213   RGD1308168  similar to chromosome 17 open reading frame 27   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308168  similar to chromosome 17 open reading frame 27   RGD1308168_predicted  similar to chromosome 17 open reading frame 27 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308168_predicted  similar to chromosome 17 open reading frame 27 (predicted)  LOC303735_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303735_predicted  similar to chromosome 17 open reading frame 27 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL