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Gene: Lnx1 (ligand of numb-protein X 1) Rattus norvegicus

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Symbol:

Lnx1

Name:

ligand of numb-protein X 1

RGD ID:

1308159

Description:

Predicted to enable PDZ domain binding activity; identical protein binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in synapse maturation and ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm; hippocampal mossy fiber to CA3 synapse; and postsynapse. Orthologous to human LNX1 (ligand of numb-protein X 1); PARTICIPATES IN Notch signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

E3 ubiquitin-protein ligase LNX; ligand of numb-protein X 1, E3 ubiquitin protein ligase; LOC360926

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LNX1 (ligand of numb-protein X 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lnx1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lnx1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LNX1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LNX1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lnx1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LNX1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LNX1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lnx1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lnx1 (ligand of numb-protein X 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PLD5 (phospholipase D family member 5)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	LNX1 (ligand of numb-protein X 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lnx1 (ligand of numb-protein X 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lnx1 (ligand of numb-protein X 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	inaD	Alliance	DIOPT (InParanoid\|PANTHER)
Drosophila melanogaster (fruit fly):	a	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	lnx1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	33,868,517 - 33,971,217 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	33,868,571 - 33,971,217 (+)	Ensembl				GRCr8
mRatBN7.2	14	33,514,429 - 33,617,086 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	33,514,436 - 33,617,086 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	33,861,616 - 33,964,216 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	35,169,187 - 35,271,787 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	33,654,677 - 33,757,275 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	36,047,136 - 36,149,740 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	36,047,144 - 36,149,740 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	35,873,412 - 35,976,243 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	35,888,702 - 35,992,436 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	32,775,671 - 32,878,444 (+)	NCBI		Celera
RGSC_v3.1	14	35,905,409 - 35,993,128 (+)	NCBI
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

head and neck squamous cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

crocidolite asbestos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

fenofibrate (ISO)

fenvalerate (EXP)

folic acid (ISO)

fonofos (ISO)

gentamycin (EXP)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

Licochalcone B (ISO)

mercury dibromide (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

parathion (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

sulforaphane (ISO)

terbufos (ISO)

testosterone (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zinc protoporphyrin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nervous system development (IEA)

synapse maturation (IEA,ISO)

ubiquitin-dependent protein catabolic process (IBA,ISO)

Cellular Component

cell junction (IEA,ISO)

cytoplasm (IBA,IEA,ISO)

cytosol (IEA,ISO)

hippocampal mossy fiber to CA3 synapse (IEA,ISO)

postsynapse (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

metal ion binding (IEA)

PDZ domain binding (IEA,ISO)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA)

ubiquitin-protein transferase activity (IBA,IEA,ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Notch signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9535908	PMID:11782429	PMID:11922143	PMID:16832352	PMID:31628376

Genomics

Comparative Map Data

Lnx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	33,868,517 - 33,971,217 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	33,868,571 - 33,971,217 (+)	Ensembl				GRCr8
mRatBN7.2	14	33,514,429 - 33,617,086 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	33,514,436 - 33,617,086 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	33,861,616 - 33,964,216 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	35,169,187 - 35,271,787 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	33,654,677 - 33,757,275 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	36,047,136 - 36,149,740 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	36,047,144 - 36,149,740 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	35,873,412 - 35,976,243 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	35,888,702 - 35,992,436 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	32,775,671 - 32,878,444 (+)	NCBI		Celera
RGSC_v3.1	14	35,905,409 - 35,993,128 (+)	NCBI
Cytogenetic Map	14	p11	NCBI

LNX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	53,459,301 - 53,652,477 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	53,459,301 - 53,701,405 (-)	Ensembl			hg38	GRCh38
GRCh37	4	54,325,468 - 54,457,653 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	54,020,225 - 54,119,124 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	54,166,395 - 54,265,295	NCBI
Celera	4	51,823,913 - 51,955,241 (-)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI
HuRef	4	50,271,546 - 50,403,183 (-)	NCBI		HuRef
CHM1_1	4	54,362,096 - 54,493,493 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	56,946,519 - 57,139,835 (-)	NCBI		T2T-CHM13v2.0

Lnx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	74,753,108 - 74,865,203 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	74,753,108 - 74,863,573 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	74,592,447 - 74,703,043 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	74,592,447 - 74,702,912 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	74,988,472 - 75,098,928 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	74,874,144 - 74,959,521 (-)	NCBI		MGSCv36	mm8
Celera	5	71,857,429 - 71,977,915 (-)	NCBI		Celera
Cytogenetic Map	5	C3.3	NCBI
cM Map	5	39.52	NCBI

Lnx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	17,155,236 - 17,265,067 (+)	Ensembl
ChiLan1.0	NW_004955447	17,154,026 - 17,265,067 (+)	NCBI	ChiLan1.0	ChiLan1.0

LNX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	76,237,493 - 76,349,633 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	76,442,505 - 76,554,582 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	70,374,106 - 70,497,058 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	76,844,338 - 77,050,270 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	76,911,082 - 77,050,270 (+)	Ensembl			panPan2	panpan1.1

LNX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	46,083,826 - 46,258,698 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	46,083,910 - 46,187,005 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	46,041,719 - 46,216,603 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	46,693,922 - 46,868,875 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	46,692,023 - 46,868,331 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	46,367,360 - 46,486,577 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	45,899,411 - 46,074,025 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	46,772,319 - 46,947,171 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lnx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	29,992,486 - 30,103,251 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	16,190,940 - 16,287,185 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	16,194,736 - 16,361,765 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LNX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	40,232,839 - 40,369,929 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	40,232,837 - 40,473,101 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	42,352,706 - 42,518,723 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LNX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	14,887,003 - 15,072,382 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	14,971,513 - 15,071,771 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666066	15,749,276 - 15,947,093 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lnx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	15,962,740 - 16,069,547 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624761	15,945,791 - 16,069,894 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lnx1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	31,367,809 - 31,469,935 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lnx1
574 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	231
Count of miRNA genes:	156
Interacting mature miRNAs:	176
Transcripts:	ENSRNOT00000003088
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631528	Scl11	Serum cholesterol level QTL 11	4.9		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	14	17875645	36079022	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9393298	39411170	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	31238080	72970315	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
2324617	Coatc2	Coat color QTL 2		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	14	31121333	39507682	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat

Markers in Region

RH130724

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	33,614,741 - 33,614,950 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	36,147,396 - 36,147,604	NCBI	Rnor6.0
Rnor_5.0	14	35,973,731 - 35,973,939	UniSTS	Rnor5.0
RGSC_v3.4	14	35,990,092 - 35,990,300	UniSTS	RGSC3.4
Celera	14	32,876,100 - 32,876,308	UniSTS
RH 3.4 Map	14	429.49	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH131812

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	33,970,224 - 33,970,786 (+)	Marker Load Pipeline
mRatBN7.2	14	33,616,093 - 33,616,655 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	36,148,748 - 36,149,309	NCBI	Rnor6.0
Rnor_5.0	14	35,975,083 - 35,975,644	UniSTS	Rnor5.0
RGSC_v3.4	14	35,991,444 - 35,992,005	UniSTS	RGSC3.4
Celera	14	32,877,452 - 32,878,013	UniSTS
RH 3.4 Map	14	429.99	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH134622

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	33,596,376 - 33,596,574 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	36,129,033 - 36,129,230	NCBI	Rnor6.0
Rnor_5.0	14	35,955,368 - 35,955,565	UniSTS	Rnor5.0
RGSC_v3.4	14	35,971,729 - 35,971,926	UniSTS	RGSC3.4
Celera	14	32,857,739 - 32,857,936	UniSTS
RH 3.4 Map	14	430.59	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH137428

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	33,910,379 - 33,910,588 (+)	Marker Load Pipeline
mRatBN7.2	14	33,556,250 - 33,556,459 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	36,088,959 - 36,089,167	NCBI	Rnor6.0
Rnor_5.0	14	35,915,240 - 35,915,448	UniSTS	Rnor5.0
RGSC_v3.4	14	35,930,517 - 35,930,725	UniSTS	RGSC3.4
Celera	14	32,817,444 - 32,817,651	UniSTS
RH 3.4 Map	14	380.08	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	140	85	84	53	27	53	6	285	127	11	118	81	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC136253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU219406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003088 ⟹ ENSRNOP00000003088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	33,868,571 - 33,971,217 (+)	Ensembl
mRatBN7.2 Ensembl	14	33,514,436 - 33,617,086 (+)	Ensembl
Rnor_6.0 Ensembl	14	36,047,144 - 36,149,740 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082183 ⟹ ENSRNOP00000069112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	33,892,740 - 33,971,061 (+)	Ensembl
mRatBN7.2 Ensembl	14	33,538,663 - 33,616,824 (+)	Ensembl
Rnor_6.0 Ensembl	14	36,071,376 - 36,149,525 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110346 ⟹ ENSRNOP00000083513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	33,909,093 - 33,971,217 (+)	Ensembl
mRatBN7.2 Ensembl	14	33,514,436 - 33,616,863 (+)	Ensembl

RefSeq Acc Id:

NM_001108358 ⟹ NP_001101828

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,868,571 - 33,971,217 (+)	NCBI
mRatBN7.2	14	33,514,436 - 33,617,086 (+)	NCBI
Rnor_6.0	14	36,047,144 - 36,149,740 (+)	NCBI
Rnor_5.0	14	35,873,412 - 35,976,243 (+)	NCBI
RGSC_v3.4	14	35,888,702 - 35,992,436 (+)	RGD
Celera	14	32,775,671 - 32,878,444 (+)	RGD

Sequence:

show sequence

GAAGTTGAGACCAGTCACAGCTCAGGCAGCCCTAGAAGCTTCTGGCACAGGGATGGAGGCGGGC
TGGTGACTGCTGCTTTGAAAGCCCCAGACATCTTTGAACAGGTTTGCATGTGGGTGACTCTTAG
AATATCTTGACCTGCCCCTGAGGAAAGTCTGCTCTCCTGGGTTTCCTAATCCCTACTCAGCCAT
GAACCAACCAGACCTTGCTGACGACCCAGATCCCAGCCCCGAGCCCCTGTGCGTAGTGTGTGGC
CAAAACCACTCCCCAGAGGAAAACCACTTCTACACATACACAGAAGATGTAGACGACGACCTCG
TATGCCACATCTGCCTACAAGCATTGCTAGACCCTCTGGACACTCCGTGTGGACACACCTACTG
TACCCTGTGTCTCACCAACTTCCTGGTGGAGAAGGACTTCTGCCCTGTGGATCGAAAGCCTGTG
GTTCTGCAGCACTGCAAGAAATCCAACATCTTGGTCAACAAGCTTCTCAACAAGCTGTTGGTCA
ACTGCCCATTCACAGAGCACTGCTCCGAGGTGCTCCAGCGCTGCAATCTCCAGTATCATTTCCA
GACCAGCTGCAAAGGGGCCTCCCACTATGGCCTGACCAAAGACAGGAAAAGACGCTCACAAGAT
GGCTGCCCTGATGGTTGCGCCAGCCTCACGGCAACGACGCTCTCCCCAGAGGTTTCTGCTGCTG
CCACCATCTCTTTAATGACAGACGAGCCTGGCCTAGACAATCCTGCCTACACGTCCTCAGTGGA
GGATGGTGAACCGGTAACCAACCCCTCAGACACTGGCCGGAGCAACCGAACCAGGGCACGGCCC
TTTGAGCGCTCCACTATGAGAAGCCGCTCTTTCAAAAAGATCAACCGAGCCCTGAGTGCTCTCC
GAAGGACGAAGAGTGGAAGTGCTGTTGCCAACCACGCTGACCAGGGCAGGGACAACTCTGAGAA
CGACACTGTCCCCGAAGTCTTCCCAAGGTTGTTTCACCTGATTCCAGATGGTGAAATTACAAGC
ATCAAGATCAATAGAGTGGATCCCAATGAAAGCCTCTCCATAAGGCTTGTGGGAGGCAGCGAGA
CCCCGCTGGTCCACATCATCATCCAGCATATTTATCGTGATGGAGTGATTGCCAGAGATGGACG
ACTGCTGCCAGGAGACATCATTCTCAAGGTCAATGGCATGGACATCAGCAATGTCCCTCATAAC
TATGCCGTGCGGCTCCTGCGGCAGCCCTGCCAGGTGCTACGGCTAACGGTGCTGCGGGAACAGA
AGTTCCGTAGCAGAAGCAATGCTCCTGCGCCGGACTCCTACGGACCTCGGGATGACAGCTTCCA
TGTAATCCTCAACAAAAGCAGCCCTGAGGAGCAGCTTGGCATAAAGCTGGTGCGCAGGGTGGAT
GAGCCCGGGGTGTTCATCTTCAACGTGCTGAATGGCGGTGTTGCCGACCGACACGGCCAGCTGG
AGGAGAATGATCGTGTGTTGGCCATCAACGGACATGACCTTCGATTTGGCAGTCCAGAGAGCGC
AGCTCATCTGATTCAGGCCAGTGAAAGACGTGTTCACCTCGTCGTGTCCCGCCAGGTTCGACAG
CCCAGCCCAGACATCTTTCAAGAAGCTGGCTGCATCAGCAACGGCCAGCAGTCTCCTGTCTCAG
GGGAGAGGAGCACATCTTCTAAGCCTGCAGCCACTTGTCATGAGAAGGTTGTAAGTGTCCAAAA
AGACCCCAACGAATCTCTCGGCATGACCGTTGGAGGGGGAGCATCACACAGAGAATGGGACTTG
CCCATCTATGTCATCAGTGTTGAGCCCGGAGGAGTCATAAGCAGAGACGGAAGAATAAAAACAG
GTGACATTTTATTGAATGTGAATGGGATTGAGCTCACAGAGGTCAGCCGGACAGAGGCCGTTGC
CATACTGAAGAGCACACCCTCCTCAGTGGTACTCAAAGCCTTGGAAGTCAAGGAACAGGAGACC
CAGGAAGACTGCAGCCCAGCAGCCCTGGACTCCAACCACAACGTGACCCCGCCTGGTGACTGGT
CCCCATCCTGGGTCATGTGGCTGGAATTACCACAGTACTTATATAACTGTAAGGATGTGATACT
ACGAAGGAACACAGCGGGAAGCCTGGGCTTCTGCATTGTGGGAGGTTATGAAGAATACAGTGGT
AACCAACCTTTTTTTATCAAATCCATCGTCGAGGGAACACCCGCGTATAATGATGGAAGAATTA
GATGTGGTGACATTCTTCTTGCTGTCAACGGCAGAAGCACGTCGGGGATGATGCACGCCTGCTT
AGCGAGGATGCTCAAAGAACTCAAAGGGAAAATTACTCTCACCATTGCTTCCTGGCCTGGTACT
TTTTTATAAAACCAATGATGGATCTTAGAAAAACCACAAATAGGCTAGATAAAATTGTATTTAT
CTTGTCGATTTTTATATTTAAAGAATATATTGTAAAAAAAAAAAGCCAGAAAAAGTATGACTTA
TGAAAACAAGTTACACATCAGAGAATGTTCTCAAAAATAAAAACTAATGTTAATTTTTATTTGG
TGTGGAGGATTTCTCATCACTCCAAATCTTTTAAGTTTCTATTTTTTTAATTCAATAAAAAGCC
CATAAAAACTTACATGGTTTGTATGCCACACTTAATTCAAGGCAACGTCAAATGTGGTAGAAGT
GGAGTTGAAGACACAGCACATTATGGCCATTTCAGTTTAATGGCGGAGGATTTGAACAAGAGAT
GAATATCTTCTTCTAAGTGACCGCAGTCCTCTTACTGG

hide sequence

RefSeq Acc Id:

XM_006250902 ⟹ XP_006250964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,868,517 - 33,970,982 (+)	NCBI
mRatBN7.2	14	33,514,429 - 33,616,851 (+)	NCBI
Rnor_6.0	14	36,047,136 - 36,149,505 (+)	NCBI
Rnor_5.0	14	35,873,412 - 35,976,243 (+)	NCBI

Sequence:

show sequence

TGTACACCGAAGTTGAGACCAGTCACAGCTCAGGCAGCCCTAGAAGCTTCTGGCACAGGGATGG
AGGCGGGCTGGTGACTGCTGCTTTGAAAGCCCCAGACATCTTTGAACAGGTTTGCATGTGGGTG
ACTCTTAGAATATCTTGACCTGCCCCTGAGGAAAGTCTGCTCTCCTGGGTTTCCTAATCCCTAC
TCAGCCATGAACCAACCAGACCTTGCTGACGACCCAGATCCCAGCCCCGAGCCCCTGTGCGTAG
TGTGTGGCCAAAACCACTCCCCAGAGGAAAACCACTTCTACACATACACAGAAGATGTAGACGA
CGACCTCGTATGCCACATCTGCCTACAAGCATTGCTGGACCCTCTGGACACTCCGTGTGGACAC
ACCTACTGTACCCTGTGTCTCACCAACTTCCTGGTGGAGAAGGACTTCTGCCCTGTGGATCGAA
AGCCTGTGGTTCTGCAGCACTGCAAGAAATCCAACATCTTGGTCAACAAGCTTCTCAACAAGCT
GTTGGTCAACTGCCCATTCACAGAGCACTGCTCCGAGGTGCTCCAGCGCTGCAATCTCCAGTAT
CATTTCCAGACCAGCTGCAAAGGGGCCTCCCACTATGGCCTGACCAAAGACAGGAAAAGACGCT
CACAAGATGGCTGCCCTGATGGTTGCGCCAGCCTCACGGCAACGACGCTCTCCCCAGAGGTTTC
TGCTGCTGCCACCATCTCTTTAATGACAGACGAGCCTGGCCTAGACAATCCTGCCTACACGTCC
TCAGTGGAGGATGGTGAACCGGTAACCAACCCCTCAGACACTGGCCGGAGCAACCGAACCAGGG
CACGGCCCTTTGAGCGCTCCACTATGAGAAGCCGCTCTTTCAAAAAGATCAACCGAGCCCTGAG
TGCTCTCCGAAGGACGAAGAGTGGAAGTGCTGTTGCCAACCACGCTGACCAGGGCAGGGACAAC
TCTGAGAACGACACTGTCCCCGAAGATGGTGAAATTACAAGCATCAAGATCAATAGAGTGGATC
CCAATGAAAGCCTCTCCATAAGGCTTGTGGGAGGCAGCGAGACCCCGCTGGTCCACATCATCAT
CCAGCATATTTATCGTGATGGAGTGATTGCCAGAGATGGACGACTGCTGCCAGGAGACATCATT
CTCAAGGTCAATGGCATGGACATCAGCAATGTCCCTCATAACTATGCCGTGCGGCTCCTGCGGC
AGCCCTGCCAGGTGCTACGGCTAACGGTGCTGCGGGAACAGAAGTTCCGTAGCAGAAGCAATGC
TCCTGCGCCGGACTCCTACGGACCTCGGGATGACAGCTTCCATGTAATCCTCAACAAAAGCAGC
CCTGAGGAGCAGCTTGGCATAAAGCTGGTGCGCAGGGTGGATGAGCCCGGGGTGTTCATCTTCA
ACGTGCTGAATGGCGGTGTTGCCGACCGACACGGCCAGCTGGAGGAGAATGATCGTGTGTTGGC
CATCAACGGACATGACCTTCGATTTGGCAGTCCAGAGAGCGCAGCTCATCTGATTCAGGCCAGT
GAAAGACGTGTTCACCTCGTCGTGTCCCGCCAGGTTCGACAGCCCAGCCCAGACATCTTTCAAG
AAGCTGGCTGCATCAGCAACGGCCAGCAGTCTCCTGTCTCAGGGGAGAGGAGCACATCTTCTAA
GCCTGCAGCCACTTGTCATGAGAAGGTTGTAAGTGTCCAAAAAGACCCCAACGAATCTCTCGGC
ATGACCGTTGGAGGGGGAGCATCACACAGAGAATGGGACTTGCCCATCTATGTCATCAGTGTTG
AGCCCGGAGGAGTCATAAGCAGAGACGGAAGAATAAAAACAGGTGACATTTTATTGAATGTGAA
TGGGATTGAGCTCACAGAGGTCAGCCGGACAGAGGCCGTTGCCATACTGAAGAGCACACCCTCC
TCAGTGGTACTCAAAGCCTTGGAAGTCAAGGAACAGGAGACCCAGGAAGACTGCAGCCCAGCAG
CCCTGGACTCCAACCACAACGTGACCCCGCCTGGTGACTGGTCCCCATCCTGGGTCATGTGGCT
GGAATTACCACAGTACTTATATAACTGTAAGGATGTGATACTACGAAGGAACACAGCGGGAAGC
CTGGGCTTCTGCATTGTGGGAGGTTATGAAGAATACAGTGGTAACCAACCTTTTTTTATCAAAT
CCATCGTCGAGGGAACACCCGCGTATAATGATGGAAGAATTAGATGTGGTGACATTCTTCTTGC
TGTCAACGGCAGAAGCACGTCGGGGATGATGCACGCCTGCTTAGCGAGGATGCTCAAAGAACTC
AAAGGGAAAATTACTCTCACCATTGCTTCCTGGCCTGGTACTTTTTTATAAAACCAATGATGGA
TCTTAGAAAAACCACAAATAGGCTAGATAAAATTGTATTTATCTTGTCGATTTTTATATTTAAA
GAATATATTGTAAAAAAAAAAAGCCAGAAAAAGTATGACTTATGAAAACAAGTTACACATCAGA
GAATGTTCTCAAAAATAAAAACTAATGTTAATTTTTA

hide sequence

RefSeq Acc Id:

XM_006250903 ⟹ XP_006250965

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,892,112 - 33,970,982 (+)	NCBI
mRatBN7.2	14	33,538,459 - 33,616,851 (+)	NCBI
Rnor_6.0	14	36,069,052 - 36,149,505 (+)	NCBI
Rnor_5.0	14	35,873,412 - 35,976,243 (+)	NCBI

Sequence:

show sequence

CATTGCCTCCCATGCCTCCCATTATCGTGACTCTCTAACCCTGAGCCCAACTGGGGGCTCACCT
CATCTCTGTTTTGCAAAGAGAAAGGAAAATGAGAAGCAGTGGGGGGTAGCTGGGGGCCTTGCAG
GACATAGAGGACAGACAAGGATTGGGGTTAGGGCTGTTTACTCTGAAGGAAGCTGTAGAACAAT
GCGTGGTTATTCCTAGTGAGAGCCCTGATCCCCAAGGGAGTTATTCTGATTGGGATTACGTCTG
GCGGGCAGGAGGACATCACGTGGTGCAGGAATAAGGAGTTGGAAGTTCTCTTTTTTCTCATGGA
ACACAAAGTCTCAGGTAGCAAGGCTGGGACCCAGATGATGTCACCCTGATGCCATCAGGCGTCA
AGACTTCCTTCCGCTCTTCAGTTTAGTGTCCACCCTCAAGCTTGTCACCGAGTGTTCCCAAAAT
GGCTGCTCGACATAGGATCTCATCAAGATTTCTGGCAGGGAGGGAGCCAAGACTGTTTCCTTTA
AAGCCCTTTCCGGAATGTCTCTACCAGTGAGATTTGCTTAAGCTTTATTGGTGTGAATCCAGGG
CCACCCATCTGCAAGAGAGTCCAAGTGGGTTACTGTCACAAATAAACATGGGTTCTGTTAGAAG
AAAGATTGGATATCTGGTGGGTGGCCACAACGTGACAAGGGAACAACAGGAAGGATGTGTTCAT
TTTTATGTTACGTTCTCATTCCCTCATCTGTCCATCCTGAAAGGCAAGGAGACCAACGGATGAG
CCCCCCTCTATTTTTCCCAGAACACCTACTGAGCTGTCAGCAGCACCCTGCCATGCCATCATTA
CCAAGTCATGGTGGATACAGCATGCTACGTGTGAGTTAGGGTTTATCCTCTAGGGCATGCGTGT
CTAAGAAGAGATCGCACCAGAACTTGCTAAAACCCACATTTAGAAAAAGATGGCGGCATGCCTT
CCTTCTCAGTCTAGGAGGGAGGAAAAGAAATGAGACCAGGATAAGCAAGCCACAATCGCTAGTA
GTCATCAGAAACTACTGACTGATGCAGGCATAGTTTCGTTGTGCCTCCATAACAAGACTCTGAG
GTAAAATGCTGTTATGACTGTTGCTCTCTCAGAGGGGAGGAAGTTCAGAGAGGGTAAGCAGTGT
GACTCTGACGCCCAGCATGACACAGAGCTGGGATTCAAATCTCAAGCTGGTCACCTCAGCAGCT
AGTACCAACTCCAGCTTCCTCTTTACTGCTGTCCACCAGCTCTGACTCACTCCTGCCTAACAGG
ATTCCCTGACAGACGATTGAGTTTGGGCCTCAGCAGAATTAGCCTTGAGTATGTCAGGCTCTCT
CAGGAGTGCATATGTCTGATCCAGACCATGCAAGTCCAGTGCACGGGCAAAGCTTGGCTCTGTT
TAAATGCTCTCAGCCTGCCTTGCCTTGATGCCCAATCCACATGTCAAACTCTCAGACACTATAG
AGCTGATTGTAGTTCCCCTGCCTCACCCCTACATAGACACTCCAGGGCTCTTCTTCCTCCTCTC
CCTTGCAAGGGCAGCCTGTTAACCGAGAAGTTAACTGTCCCTTTGAGCCTTTTTGACGACTTAG
CCCCTTGAGTTGGTGAGATGCGCAAACACTTCTTGAACATGCAGTCTTGGGTGTGCCTCGGCCA
TCAGAGCTAGGGCACACAATCCCTATCTAATTTTAAGCTGGAAGAAATAATGGGGTCGGGTCCC
CACAAGCAAAGATGCGTGTTAACTTCATTTCAGTAACTGAGGTTCAGGCACTGTAACAAATGCC
AGAGCTCAGTCCAGGGAAGAGCAAGTGTGACTCCCTTCTCGTAGACAGGACCCCGTTTACACAG
CTCCGCTGTCTATTTGGGCTCATTAGTATTCGCAAAGGAAACAGCCTGGTCTCCGGGAGAGCCT
GTCTTCAGCACACAAGCATCACCTGTGTCAGGATAGTGGGTAAAGCGTCCACTCGGGAGGGGTG
GTTCCTTTTCTGCACCTCCCGTGAATCAGCATCACACAGCTGAGAGACTCCGGGCTTGGCTCCC
GTGATGCTATTTTGAGCGTCTGTCCGCAGCAGGCTGCAGAACGGCTTTTGATTATTCGCGCATT
CACCCGTGTGGAGTGGAGCTGAAATGTACCATGCCCGTGCCCTCTTCCAACAAGGCTTCAATCC
TAGCCAGGCTGCTCCTAGCCAGTGATGTAAATGTACCAGCTGCTTCCCAAGAGCCAGTCCGAAT
CCTGCAGGAGGGGCCCATCCCTCTCCCAAGCAGCAGCCTGCTGCCTTCAGCCTAAGCCCTCTTG
CCAACCATGGTGGGTCTCTCCGGTCTCCCATCACTTTATCGGAGACGCCCAGAACTAATCCTCT
TACAGGCTCATGATTTATAGTATGCCTTAATCTACAGGCTCCAAGTCAGATTCATTGTTATCTC
CTGATTGTGGGGAGATGAACAGATTTGCTTAAACGGGCTCCACTGGGCTGGCAGGAGGTGGTCA
GGAGGAAGGCGGCAGACGGCTCGGAAAATGAAGGCGCTGCTGCTGCTGGTCCTGCCCTGGCTGA
GTCCAGCTAACTACATTGACAATGTGGGCAACCTGCACTTCCTGTACTCGGAACTCTGCAAAGG
GGCCTCCCACTATGGCCTGACCAAAGACAGGAAAAGACGCTCACAAGATGGCTGCCCTGATGGT
TGCGCCAGCCTCACGGCAACGACGCTCTCCCCAGAGGTTTCTGCTGCTGCCACCATCTCTTTAA
TGACAGACGAGCCTGGCCTAGACAATCCTGCCTACACGTCCTCAGTGGAGGATGGTGAACCGGT
AACCAACCCCTCAGACACTGGCCGGAGCAACCGAACCAGGGCACGGCCCTTTGAGCGCTCCACT
ATGAGAAGCCGCTCTTTCAAAAAGATCAACCGAGCCCTGAGTGCTCTCCGAAGGACGAAGAGTG
GAAGTGCTGTTGCCAACCACGCTGACCAGGGCAGGGACAACTCTGAGAACGACACTGTCCCCGA
AGTCTTCCCAAGGTTGTTTCACCTGATTCCAGATGGTGAAATTACAAGCATCAAGATCAATAGA
GTGGATCCCAATGAAAGCCTCTCCATAAGGCTTGTGGGAGGCAGCGAGACCCCGCTGGTCCACA
TCATCATCCAGCATATTTATCGTGATGGAGTGATTGCCAGAGATGGACGACTGCTGCCAGGAGA
CATCATTCTCAAGGTCAATGGCATGGACATCAGCAATGTCCCTCATAACTATGCCGTGCGGCTC
CTGCGGCAGCCCTGCCAGGTGCTACGGCTAACGGTGCTGCGGGAACAGAAGTTCCGTAGCAGAA
GCAATGCTCCTGCGCCGGACTCCTACGGACCTCGGGATGACAGCTTCCATGTAATCCTCAACAA
AAGCAGCCCTGAGGAGCAGCTTGGCATAAAGCTGGTGCGCAGGGTGGATGAGCCCGGGGTGTTC
ATCTTCAACGTGCTGAATGGCGGTGTTGCCGACCGACACGGCCAGCTGGAGGAGAATGATCGTG
TGTTGGCCATCAACGGACATGACCTTCGATTTGGCAGTCCAGAGAGCGCAGCTCATCTGATTCA
GGCCAGTGAAAGACGTGTTCACCTCGTCGTGTCCCGCCAGGTTCGACAGCCCAGCCCAGACATC
TTTCAAGAAGCTGGCTGCATCAGCAACGGCCAGCAGTCTCCTGTCTCAGGGGAGAGGAGCACAT
CTTCTAAGCCTGCAGCCACTTGTCATGAGAAGGTTGTAAGTGTCCAAAAAGACCCCAACGAATC
TCTCGGCATGACCGTTGGAGGGGGAGCATCACACAGAGAATGGGACTTGCCCATCTATGTCATC
AGTGTTGAGCCCGGAGGAGTCATAAGCAGAGACGGAAGAATAAAAACAGGTGACATTTTATTGA
ATGTGAATGGGATTGAGCTCACAGAGGTCAGCCGGACAGAGGCCGTTGCCATACTGAAGAGCAC
ACCCTCCTCAGTGGTACTCAAAGCCTTGGAAGTCAAGGAACAGGAGACCCAGGAAGACTGCAGC
CCAGCAGCCCTGGACTCCAACCACAACGTGACCCCGCCTGGTGACTGGTCCCCATCCTGGGTCA
TGTGGCTGGAATTACCACAGTACTTATATAACTGTAAGGATGTGATACTACGAAGGAACACAGC
GGGAAGCCTGGGCTTCTGCATTGTGGGAGGTTATGAAGAATACAGTGGTAACCAACCTTTTTTT
ATCAAATCCATCGTCGAGGGAACACCCGCGTATAATGATGGAAGAATTAGATGTGGTGACATTC
TTCTTGCTGTCAACGGCAGAAGCACGTCGGGGATGATGCACGCCTGCTTAGCGAGGATGCTCAA
AGAACTCAAAGGGAAAATTACTCTCACCATTGCTTCCTGGCCTGGTACTTTTTTATAAAACCAA
TGATGGATCTTAGAAAAACCACAAATAGGCTAGATAAAATTGTATTTATCTTGTCGATTTTTAT
ATTTAAAGAATATATTGTAAAAAAAAAAAGCCAGAAAAAGTATGACTTATGAAAACAAGTTACA
CATCAGAGAATGTTCTCAAAAATAAAAACTAATGTTAATTTTTA

hide sequence

RefSeq Acc Id:

XM_006250904 ⟹ XP_006250966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,892,112 - 33,970,982 (+)	NCBI
mRatBN7.2	14	33,538,456 - 33,616,851 (+)	NCBI
Rnor_6.0	14	36,069,052 - 36,149,505 (+)	NCBI
Rnor_5.0	14	35,873,412 - 35,976,243 (+)	NCBI

Sequence:

show sequence

CATTGCCTCCCATGCCTCCCATTATCGTGACTCTCTAACCCTGAGCCCAACTGGGGGCTCACCT
CATCTCTGTTTTGCAAAGAGAAAGGAAAATGAGAAGCAGTGGGGGGTAGCTGGGGGCCTTGCAG
GACATAGAGGACAGACAAGGATTGGGGTTAGGGCTGTTTACTCTGAAGGAAGCTGTAGAACAAT
GCGTGGTTATTCCTAGTGAGAGCCCTGATCCCCAAGGGAGTTATTCTGATTGGGATTACGTCTG
GCGGGCAGGAGGACATCACGTGGTGCAGGAATAAGGAGTTGGAAGTTCTCTTTTTTCTCATGGA
ACACAAAGTCTCAGGTAGCAAGGCTGGGACCCAGATGATGTCACCCTGATGCCATCAGGCGTCA
AGACTTCCTTCCGCTCTTCAGTTTAGTGTCCACCCTCAAGCTTGTCACCGAGTGTTCCCAAAAT
GGCTGCTCGACATAGGATCTCATCAAGATTTCTGGCAGGGAGGGAGCCAAGACTGTTTCCTTTA
AAGCCCTTTCCGGAATGTCTCTACCAGTGAGATTTGCTTAAGCTTTATTGGTGTGAATCCAGGG
CCACCCATCTGCAAGAGAGTCCAAGTGGGTTACTGTCACAAATAAACATGGGTTCTGTTAGAAG
AAAGATTGGATATCTGGTGGGTGGCCACAACGTGACAAGGGAACAACAGGAAGGATGTGTTCAT
TTTTATGTTACGTTCTCATTCCCTCATCTGTCCATCCTGAAAGGCAAGGAGACCAACGGATGAG
CCCCCCTCTATTTTTCCCAGAACACCTACTGAGCTGTCAGCAGCACCCTGCCATGCCATCATTA
CCAAGTCATGGTGGATACAGCATGCTACGTGTGAGTTAGGGTTTATCCTCTAGGGCATGCGTGT
CTAAGAAGAGATCGCACCAGAACTTGCTAAAACCCACATTTAGAAAAAGATGGCGGCATGCCTT
CCTTCTCAGTCTAGGAGGGAGGAAAAGAAATGAGACCAGGATAAGCAAGCCACAATCGCTAGTA
GTCATCAGAAACTACTGACTGATGCAGGCATAGTTTCGTTGTGCCTCCATAACAAGACTCTGAG
GTAAAATGCTGTTATGACTGTTGCTCTCTCAGAGGGGAGGAAGTTCAGAGAGGGTAAGCAGTGT
GACTCTGACGCCCAGCATGACACAGAGCTGGGATTCAAATCTCAAGCTGGTCACCTCAGCAGCT
AGTACCAACTCCAGCTTCCTCTTTACTGCTGTCCACCAGCTCTGACTCACTCCTGCCTAACAGG
ATTCCCTGACAGACGATTGAGTTTGGGCCTCAGCAGAATTAGCCTTGAGTATGTCAGGCTCTCT
CAGGAGTGCATATGTCTGATCCAGACCATGCAAGTCCAGTGCACGGGCAAAGCTTGGCTCTGTT
TAAATGCTCTCAGCCTGCCTTGCCTTGATGCCCAATCCACATGTCAAACTCTCAGACACTATAG
AGCTGATTGTAGTTCCCCTGCCTCACCCCTACATAGACACTCCAGGGCTCTTCTTCCTCCTCTC
CCTTGCAAGGGCAGCCTGTTAACCGAGAAGTTAACTGTCCCTTTGAGCCTTTTTGACGACTTAG
CCCCTTGAGTTGGTGAGATGCGCAAACACTTCTTGAACATGCAGTCTTGGGTGTGCCTCGGCCA
TCAGAGCTAGGGCACACAATCCCTATCTAATTTTAAGCTGGAAGAAATAATGGGGTCGGGTCCC
CACAAGCAAAGATGCGTGTTAACTTCATTTCAGTAACTGAGGTTCAGGCACTGTAACAAATGCC
AGAGCTCAGTCCAGGGAAGAGCAAGTGTGACTCCCTTCTCGTAGACAGGACCCCGTTTACACAG
CTCCGCTGTCTATTTGGGCTCATTAGTATTCGCAAAGGAAACAGCCTGGTCTCCGGGAGAGCCT
GTCTTCAGCACACAAGCATCACCTGTGTCAGGATAGTGGGTAAAGCGTCCACTCGGGAGGGGTG
GTTCCTTTTCTGCACCTCCCGTGAATCAGCATCACACAGCTGAGAGACTCCGGGCTTGGCTCCC
GTGATGCTATTTTGAGCGTCTGTCCGCAGCAGGCTGCAGAACGGCTTTTGATTATTCGCGCATT
CACCCGTGTGGAGTGGAGCTGAAATGTACCATGCCCGTGCCCTCTTCCAACAAGGCTTCAATCC
TAGCCAGGCTGCTCCTAGCCAGTGATGTAAATGTACCAGCTGCTTCCCAAGAGCCAGTCCGAAT
CCTGCAGGAGGGGCCCATCCCTCTCCCAAGCAGCAGCCTGCTGCCTTCAGCCTAAGCCCTCTTG
CCAACCATGGTGGGTCTCTCCGGTCTCCCATCACTTTATCGGAGACGCCCAGAACTAATCCTCT
TACAGGCTCATGATTTATAGTATGCCTTAATCTACAGGCTCCAAGTCAGATTCATTGTTATCTC
CTGATTGTGGGGAGATGAACAGATTTGCTTAAACGGGCTCCACTGGGCTGGCAGGAGGTGGTCA
GGAGGAAGGCGGCAGACGGCTCGGAAAATGAAGGCGCTGCTGCTGCTGGTCCTGCCCTGGCTGA
GTCCAGCTAACTACATTGACAATGTGGGCAACCTGCACTTCCTGTACTCGGAACTCTGCAAAGG
GGCCTCCCACTATGGCCTGACCAAAGACAGGAAAAGACGCTCACAAGATGGCTGCCCTGATGGT
TGCGCCAGCCTCACGGCAACGACGCTCTCCCCAGAGGTTTCTGCTGCTGCCACCATCTCTTTAA
TGACAGACGAGCCTGGCCTAGACAATCCTGCCTACACGTCCTCAGTGGAGGATGGTGAACCGGT
AACCAACCCCTCAGACACTGGCCGGAGCAACCGAACCAGGGCACGGCCCTTTGAGCGCTCCACT
ATGAGAAGCCGCTCTTTCAAAAAGATCAACCGAGCCCTGAGTGCTCTCCGAAGGACGAAGAGTG
GAAGTGCTGTTGCCAACCACGCTGACCAGGGCAGGGACAACTCTGAGAACGACACTGTCCCCGA
AGATGGTGAAATTACAAGCATCAAGATCAATAGAGTGGATCCCAATGAAAGCCTCTCCATAAGG
CTTGTGGGAGGCAGCGAGACCCCGCTGGTCCACATCATCATCCAGCATATTTATCGTGATGGAG
TGATTGCCAGAGATGGACGACTGCTGCCAGGAGACATCATTCTCAAGGTCAATGGCATGGACAT
CAGCAATGTCCCTCATAACTATGCCGTGCGGCTCCTGCGGCAGCCCTGCCAGGTGCTACGGCTA
ACGGTGCTGCGGGAACAGAAGTTCCGTAGCAGAAGCAATGCTCCTGCGCCGGACTCCTACGGAC
CTCGGGATGACAGCTTCCATGTAATCCTCAACAAAAGCAGCCCTGAGGAGCAGCTTGGCATAAA
GCTGGTGCGCAGGGTGGATGAGCCCGGGGTGTTCATCTTCAACGTGCTGAATGGCGGTGTTGCC
GACCGACACGGCCAGCTGGAGGAGAATGATCGTGTGTTGGCCATCAACGGACATGACCTTCGAT
TTGGCAGTCCAGAGAGCGCAGCTCATCTGATTCAGGCCAGTGAAAGACGTGTTCACCTCGTCGT
GTCCCGCCAGGTTCGACAGCCCAGCCCAGACATCTTTCAAGAAGCTGGCTGCATCAGCAACGGC
CAGCAGTCTCCTGTCTCAGGGGAGAGGAGCACATCTTCTAAGCCTGCAGCCACTTGTCATGAGA
AGGTTGTAAGTGTCCAAAAAGACCCCAACGAATCTCTCGGCATGACCGTTGGAGGGGGAGCATC
ACACAGAGAATGGGACTTGCCCATCTATGTCATCAGTGTTGAGCCCGGAGGAGTCATAAGCAGA
GACGGAAGAATAAAAACAGGTGACATTTTATTGAATGTGAATGGGATTGAGCTCACAGAGGTCA
GCCGGACAGAGGCCGTTGCCATACTGAAGAGCACACCCTCCTCAGTGGTACTCAAAGCCTTGGA
AGTCAAGGAACAGGAGACCCAGGAAGACTGCAGCCCAGCAGCCCTGGACTCCAACCACAACGTG
ACCCCGCCTGGTGACTGGTCCCCATCCTGGGTCATGTGGCTGGAATTACCACAGTACTTATATA
ACTGTAAGGATGTGATACTACGAAGGAACACAGCGGGAAGCCTGGGCTTCTGCATTGTGGGAGG
TTATGAAGAATACAGTGGTAACCAACCTTTTTTTATCAAATCCATCGTCGAGGGAACACCCGCG
TATAATGATGGAAGAATTAGATGTGGTGACATTCTTCTTGCTGTCAACGGCAGAAGCACGTCGG
GGATGATGCACGCCTGCTTAGCGAGGATGCTCAAAGAACTCAAAGGGAAAATTACTCTCACCAT
TGCTTCCTGGCCTGGTACTTTTTTATAAAACCAATGATGGATCTTAGAAAAACCACAAATAGGC
TAGATAAAATTGTATTTATCTTGTCGATTTTTATATTTAAAGAATATATTGTAAAAAAAAAAAG
CCAGAAAAAGTATGACTTATGAAAACAAGTTACACATCAGAGAATGTTCTCAAAAATAAAAACT
AATGTTAATTTTTA

hide sequence

RefSeq Acc Id:

XM_039092174 ⟹ XP_038948102

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,868,517 - 33,970,982 (+)	NCBI
mRatBN7.2	14	33,514,429 - 33,616,851 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101828	(Get FASTA)	NCBI Sequence Viewer
	XP_006250964	(Get FASTA)	NCBI Sequence Viewer
	XP_006250965	(Get FASTA)	NCBI Sequence Viewer
	XP_006250966	(Get FASTA)	NCBI Sequence Viewer
	XP_038948102	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABW87488	(Get FASTA)	NCBI Sequence Viewer
	ABW87489	(Get FASTA)	NCBI Sequence Viewer
	ABW87490	(Get FASTA)	NCBI Sequence Viewer
	ABW87491	(Get FASTA)	NCBI Sequence Viewer
	ABW87492	(Get FASTA)	NCBI Sequence Viewer
	ABW87493	(Get FASTA)	NCBI Sequence Viewer
	ABW87494	(Get FASTA)	NCBI Sequence Viewer
	ABW87495	(Get FASTA)	NCBI Sequence Viewer
	EDL89936	(Get FASTA)	NCBI Sequence Viewer
	EDL89937	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003088
	ENSRNOP00000003088.3
	ENSRNOP00000069112
	ENSRNOP00000069112.1
	ENSRNOP00000083513.2

RefSeq Acc Id:

NP_001101828 ⟸ NM_001108358

- UniProtKB:

B6RHI6 (UniProtKB/TrEMBL), F7EWI3 (UniProtKB/TrEMBL), B6RHI5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNQPDLADDPDPSPEPLCVVCGQNHSPEENHFYTYTEDVDDDLVCHICLQALLDPLDTPCGHTY
CTLCLTNFLVEKDFCPVDRKPVVLQHCKKSNILVNKLLNKLLVNCPFTEHCSEVLQRCNLQYHF
QTSCKGASHYGLTKDRKRRSQDGCPDGCASLTATTLSPEVSAAATISLMTDEPGLDNPAYTSSV
EDGEPVTNPSDTGRSNRTRARPFERSTMRSRSFKKINRALSALRRTKSGSAVANHADQGRDNSE
NDTVPEVFPRLFHLIPDGEITSIKINRVDPNESLSIRLVGGSETPLVHIIIQHIYRDGVIARDG
RLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLRLTVLREQKFRSRSNAPAPDSYGPRDDSF
HVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPES
AAHLIQASERRVHLVVSRQVRQPSPDIFQEAGCISNGQQSPVSGERSTSSKPAATCHEKVVSVQ
KDPNESLGMTVGGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVNGIELTEVSRTEAV
AILKSTPSSVVLKALEVKEQETQEDCSPAALDSNHNVTPPGDWSPSWVMWLELPQYLYNCKDVI
LRRNTAGSLGFCIVGGYEEYSGNQPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGMMHAC
LARMLKELKGKITLTIASWPGTFL

hide sequence

RefSeq Acc Id:	XP_006250964 ⟸ XM_006250902
- Peptide Label:	isoform X1
- UniProtKB:	B6RHI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNQPDLADDPDPSPEPLCVVCGQNHSPEENHFYTYTEDVDDDLVCHICLQALLDPLDTPCGHTY CTLCLTNFLVEKDFCPVDRKPVVLQHCKKSNILVNKLLNKLLVNCPFTEHCSEVLQRCNLQYHF QTSCKGASHYGLTKDRKRRSQDGCPDGCASLTATTLSPEVSAAATISLMTDEPGLDNPAYTSSV EDGEPVTNPSDTGRSNRTRARPFERSTMRSRSFKKINRALSALRRTKSGSAVANHADQGRDNSE NDTVPEDGEITSIKINRVDPNESLSIRLVGGSETPLVHIIIQHIYRDGVIARDGRLLPGDIILK VNGMDISNVPHNYAVRLLRQPCQVLRLTVLREQKFRSRSNAPAPDSYGPRDDSFHVILNKSSPE EQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLIQASER RVHLVVSRQVRQPSPDIFQEAGCISNGQQSPVSGERSTSSKPAATCHEKVVSVQKDPNESLGMT VGGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVNGIELTEVSRTEAVAILKSTPSSV VLKALEVKEQETQEDCSPAALDSNHNVTPPGDWSPSWVMWLELPQYLYNCKDVILRRNTAGSLG FCIVGGYEEYSGNQPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGMMHACLARMLKELKG KITLTIASWPGTFL hide sequence

RefSeq Acc Id:	XP_006250966 ⟸ XM_006250904
- Peptide Label:	isoform X3
- UniProtKB:	B6RHI7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKALLLLVLPWLSPANYIDNVGNLHFLYSELCKGASHYGLTKDRKRRSQDGCPDGCASLTATTL SPEVSAAATISLMTDEPGLDNPAYTSSVEDGEPVTNPSDTGRSNRTRARPFERSTMRSRSFKKI NRALSALRRTKSGSAVANHADQGRDNSENDTVPEDGEITSIKINRVDPNESLSIRLVGGSETPL VHIIIQHIYRDGVIARDGRLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLRLTVLREQKFR SRSNAPAPDSYGPRDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEEN DRVLAINGHDLRFGSPESAAHLIQASERRVHLVVSRQVRQPSPDIFQEAGCISNGQQSPVSGER STSSKPAATCHEKVVSVQKDPNESLGMTVGGGASHREWDLPIYVISVEPGGVISRDGRIKTGDI LLNVNGIELTEVSRTEAVAILKSTPSSVVLKALEVKEQETQEDCSPAALDSNHNVTPPGDWSPS WVMWLELPQYLYNCKDVILRRNTAGSLGFCIVGGYEEYSGNQPFFIKSIVEGTPAYNDGRIRCG DILLAVNGRSTSGMMHACLARMLKELKGKITLTIASWPGTFL hide sequence

RefSeq Acc Id:	XP_006250965 ⟸ XM_006250903
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JUI7 (UniProtKB/TrEMBL), A6JD15 (UniProtKB/TrEMBL), B6RHI7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKALLLLVLPWLSPANYIDNVGNLHFLYSELCKGASHYGLTKDRKRRSQDGCPDGCASLTATTL SPEVSAAATISLMTDEPGLDNPAYTSSVEDGEPVTNPSDTGRSNRTRARPFERSTMRSRSFKKI NRALSALRRTKSGSAVANHADQGRDNSENDTVPEVFPRLFHLIPDGEITSIKINRVDPNESLSI RLVGGSETPLVHIIIQHIYRDGVIARDGRLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLR LTVLREQKFRSRSNAPAPDSYGPRDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGV ADRHGQLEENDRVLAINGHDLRFGSPESAAHLIQASERRVHLVVSRQVRQPSPDIFQEAGCISN GQQSPVSGERSTSSKPAATCHEKVVSVQKDPNESLGMTVGGGASHREWDLPIYVISVEPGGVIS RDGRIKTGDILLNVNGIELTEVSRTEAVAILKSTPSSVVLKALEVKEQETQEDCSPAALDSNHN VTPPGDWSPSWVMWLELPQYLYNCKDVILRRNTAGSLGFCIVGGYEEYSGNQPFFIKSIVEGTP AYNDGRIRCGDILLAVNGRSTSGMMHACLARMLKELKGKITLTIASWPGTFL hide sequence

Ensembl Acc Id:

ENSRNOP00000069112 ⟸ ENSRNOT00000082183

Ensembl Acc Id:

ENSRNOP00000003088 ⟸ ENSRNOT00000003088

RefSeq Acc Id:	XP_038948102 ⟸ XM_039092174
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZXC4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083513 ⟸ ENSRNOT00000110346

Protein Domains

PDZ RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B6RHI6-F1-model_v2	AlphaFold	B6RHI6	1-728	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699283

Promoter ID:

EPDNEW_R9808

Type:

multiple initiation site

Name:

Lnx1_2

Description:

ligand of numb-protein X 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9809

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	36,047,160 - 36,047,220	EPDNEW

RGD ID:

13699296

Promoter ID:

EPDNEW_R9809

Type:

multiple initiation site

Name:

Lnx1_1

Description:

ligand of numb-protein X 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9808

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	36,071,334 - 36,071,394	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308159	AgrOrtholog
BioCyc Gene	G2FUF-15917	BioCyc
Ensembl Genes	ENSRNOG00000002272	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003088	ENTREZGENE
	ENSRNOT00000003088.7	UniProtKB/TrEMBL
	ENSRNOT00000082183	ENTREZGENE
	ENSRNOT00000082183.3	UniProtKB/TrEMBL
	ENSRNOT00000110346.2	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_scaffold	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:360926	UniProtKB/TrEMBL
NCBI Gene	360926	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE LNX	UniProtKB/TrEMBL
	MULTIPLE PDZ DOMAIN PROTEIN	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
	zf-C3HC4_3	UniProtKB/TrEMBL
PhenoGen	Lnx1	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002272	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
	RING	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A0G2JUI7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZXC4	ENTREZGENE, UniProtKB/TrEMBL
	A6JD15	ENTREZGENE, UniProtKB/TrEMBL
	B6RHI0_RAT	UniProtKB/TrEMBL
	B6RHI1_RAT	UniProtKB/TrEMBL
	B6RHI5	ENTREZGENE, UniProtKB/TrEMBL
	B6RHI6	ENTREZGENE, UniProtKB/TrEMBL
	B6RHI7	ENTREZGENE, UniProtKB/TrEMBL
	F7EWI3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Lnx1	ligand of numb-protein X 1	Lnx1	ligand of numb-protein X 1, E3 ubiquitin protein ligase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-19	Lnx1	ligand of numb-protein X 1, E3 ubiquitin protein ligase	Lnx1	ligand of numb-protein X 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Lnx1	ligand of numb-protein X 1	Lnx1_predicted	ligand of numb-protein X 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Lnx1_predicted	ligand of numb-protein X 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)