2610318N02Rikl (RIKEN cDNA 2610318N02 gene like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: 2610318N02Rikl (RIKEN cDNA 2610318N02 gene like) Rattus norvegicus
Analyze
Symbol: 2610318N02Rikl
Name: RIKEN cDNA 2610318N02 gene like
RGD ID: 1308065
Description: INTERACTS WITH acrylamide; bisphenol A; copper atom
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical LOC287935; hypothetical protein LOC287935; LOC287935; MGC156810; RGD1308065; uncharacterized protein LOC287935
RGD Orthologs
Human
Mouse
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,383,363 - 97,400,092 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1197,386,733 - 97,400,088 (+)EnsemblGRCr8
mRatBN7.21183,879,178 - 83,895,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,882,350 - 83,895,873 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1192,606,073 - 92,619,425 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01185,267,215 - 85,280,567 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,320,796 - 84,334,148 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,128,785 - 88,145,488 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,131,960 - 88,145,481 (+)Ensemblrn6Rnor6.0
Rnor_5.01191,184,507 - 91,198,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41185,887,782 - 85,901,307 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,638,081 - 82,651,606 (+)NCBICelera
RGSC_v3.11185,925,829 - 85,941,907 (+)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
2610318N02Rikl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,383,363 - 97,400,092 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1197,386,733 - 97,400,088 (+)EnsemblGRCr8
mRatBN7.21183,879,178 - 83,895,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,882,350 - 83,895,873 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1192,606,073 - 92,619,425 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01185,267,215 - 85,280,567 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,320,796 - 84,334,148 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,128,785 - 88,145,488 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,131,960 - 88,145,481 (+)Ensemblrn6Rnor6.0
Rnor_5.01191,184,507 - 91,198,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41185,887,782 - 85,901,307 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,638,081 - 82,651,606 (+)NCBICelera
RGSC_v3.11185,925,829 - 85,941,907 (+)NCBI
Cytogenetic Map11q23NCBI
AP000553.5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382221,652,181 - 21,662,363 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2221,657,811 - 21,661,021 (+)Ensemblhg38GRCh38
GRCh372222,006,470 - 22,016,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q11.21NCBI
CHM1_12222,011,775 - 22,016,845 (+)NCBICHM1_1
T2T-CHM13v2.02222,065,672 - 22,075,837 (+)NCBIT2T-CHM13v2.0
2610318N02Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391616,931,262 - 16,943,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1616,931,262 - 16,943,031 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381617,113,398 - 17,125,202 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,113,398 - 17,125,167 (-)Ensemblmm10GRCm38
MGSCv371617,113,491 - 17,125,199 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361617,026,961 - 17,038,669 (-)NCBIMGSCv36mm8
Celera1617,686,191 - 17,697,900 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.61NCBI
LOC608641
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,926,728 - 30,937,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,883,909 - 30,894,936 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02632,332,442 - 32,343,477 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.12630,381,746 - 30,392,778 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02630,005,444 - 30,016,552 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02631,095,419 - 31,106,559 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101971249
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,708,237 - 140,726,862 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366192,026,897 - 2,046,579 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100155534
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11450,234,153 - 50,246,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,684,666 - 53,696,767 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101704519
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247471,203,517 - 1,215,405 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116898622
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v142,388,243 - 2,403,870 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:139
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000046664
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat

Markers in Region
RH130221  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21183,895,694 - 83,895,848 (+)MAPPERmRatBN7.2
Rnor_6.01188,145,303 - 88,145,456NCBIRnor6.0
Rnor_5.01191,197,968 - 91,198,121UniSTSRnor5.0
RGSC_v3.41185,901,125 - 85,901,278UniSTSRGSC3.4
Celera1182,651,424 - 82,651,577UniSTS
RH 3.4 Map11730.93UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 8 53 139 76 75 46 87 46 5 303 164 11 119 72 90 29 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000046664   ⟹   ENSRNOP00000040753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1197,386,733 - 97,400,088 (+)Ensembl
mRatBN7.2 Ensembl1183,882,350 - 83,895,873 (+)Ensembl
Rnor_6.0 Ensembl1188,131,960 - 88,145,481 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134461   ⟹   ENSRNOP00000102367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1197,386,733 - 97,399,575 (+)Ensembl
RefSeq Acc Id: NM_001077666   ⟹   NP_001071134
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,386,567 - 97,400,092 (+)NCBI
mRatBN7.21183,882,350 - 83,895,877 (+)NCBI
Rnor_6.01188,131,960 - 88,145,485 (+)NCBI
Rnor_5.01191,184,507 - 91,198,150 (+)NCBI
RGSC_v3.41185,887,782 - 85,901,307 (+)RGD
Celera1182,638,081 - 82,651,606 (+)RGD
Sequence:
RefSeq Acc Id: XM_008768856   ⟹   XP_008767078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,383,396 - 97,399,576 (+)NCBI
mRatBN7.21183,879,178 - 83,895,877 (+)NCBI
Rnor_6.01188,128,785 - 88,145,488 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063270320   ⟹   XP_063126390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,383,363 - 97,399,576 (+)NCBI
RefSeq Acc Id: NP_001071134   ⟸   NM_001077666
- UniProtKB: A0JPQ2 (UniProtKB/TrEMBL),   A6JSN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767078   ⟸   XM_008768856
- Peptide Label: isoform X1
- UniProtKB: G3V9A1 (UniProtKB/TrEMBL),   A6JSN2 (UniProtKB/TrEMBL),   A6JSN1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040753   ⟸   ENSRNOT00000046664
RefSeq Acc Id: XP_063126390   ⟸   XM_063270320
- Peptide Label: isoform X1
- UniProtKB: A6JSN2 (UniProtKB/TrEMBL),   G3V9A1 (UniProtKB/TrEMBL),   A6JSN1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102367   ⟸   ENSRNOT00000134461

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9A1-F1-model_v2 AlphaFold G3V9A1 1-306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698337
Promoter ID:EPDNEW_R8862
Type:initiation region
Name:RGD1308065_1
Description:hypothetical LOC287935
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01188,131,936 - 88,131,996EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308065 AgrOrtholog
BioCyc Gene G2FUF-20574 BioCyc
Ensembl Genes ENSRNOG00000026918 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046664 ENTREZGENE
  ENSRNOT00000046664.5 UniProtKB/TrEMBL
  ENSRNOT00000134461 ENTREZGENE
  ENSRNOT00000134461.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135417 IMAGE-MGC_LOAD
KEGG Report rno:287935 UniProtKB/TrEMBL
MGC_CLONE MGC:156810 IMAGE-MGC_LOAD
NCBI Gene 287935 ENTREZGENE
PANTHER MCG131172, ISOFORM CRA_A UniProtKB/TrEMBL
  RIKEN CDNA 2610318N02 GENE UniProtKB/TrEMBL
PhenoGen 2610318N02Rikl PhenoGen
RatGTEx ENSRNOG00000026918 RatGTEx
UniProt A0ABK0LCJ9_RAT UniProtKB/TrEMBL
  A0JPQ2 ENTREZGENE, UniProtKB/TrEMBL
  A6JSN1 ENTREZGENE, UniProtKB/TrEMBL
  A6JSN2 ENTREZGENE, UniProtKB/TrEMBL
  G3V9A1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 2610318N02Rikl  RIKEN cDNA 2610318N02 gene like  RGD1308065  hypothetical LOC287935  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1308065  hypothetical LOC287935   RGD1308065_predicted  hypothetical LOC287935 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308065_predicted  hypothetical LOC287935 (predicted)  LOC287935_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC287935_predicted  hypothetical LOC287935 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL