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Gene: Vezf1 (vascular endothelial zinc finger 1) Rattus norvegicus

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Symbol:

Vezf1

Name:

vascular endothelial zinc finger 1

RGD ID:

1308058

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of endothelial cell differentiation and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within angiogenesis and endothelial cell development. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human VEZF1 (vascular endothelial zinc finger 1); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; all-trans-retinoic acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC287615

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VEZF1 (vascular endothelial zinc finger 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Vezf1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vezf1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VEZF1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VEZF1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vezf1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VEZF1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VEZF1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vezf1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Vezf1 (vascular endothelial zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MUC13 (mucin 13, cell surface associated)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	VEZF1 (vascular endothelial zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	VEZF1 (vascular endothelial zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Vezf1 (vascular endothelial zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	vezf1a (vascular endothelial zinc finger 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	vezf1b (vascular endothelial zinc finger 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vezf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vezf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,341,666 - 73,373,320 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	73,356,985 - 73,373,320 (+)	Ensembl				GRCr8
mRatBN7.2	10	72,859,669 - 72,876,111 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	72,859,877 - 72,876,111 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	77,470,257 - 77,486,475 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	76,975,191 - 76,991,409 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	72,439,697 - 72,455,915 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	75,365,763 - 75,382,014 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,365,822 - 75,381,555 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	74,724,491 - 74,737,715 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	76,364,360 - 76,374,956 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	71,769,971 - 71,786,071 (+)	NCBI		Celera
RGSC_v3.1	10	76,338,908 - 76,391,952 (+)	NCBI
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dilated Cardiomyopathy 1OO (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

casticin (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

choline (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cytarabine (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

indometacin (ISO)

inulin (ISO)

L-methionine (ISO)

leflunomide (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel subsulfide (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (EXP)

rac-lactic acid (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

tamibarotene (ISO)

thioacetamide (EXP)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vincristine (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

endothelial cell development (ISO)

positive regulation of endothelial cell differentiation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11504723	PMID:15882861	PMID:27538588

Genomics

Comparative Map Data

Vezf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,341,666 - 73,373,320 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	73,356,985 - 73,373,320 (+)	Ensembl				GRCr8
mRatBN7.2	10	72,859,669 - 72,876,111 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	72,859,877 - 72,876,111 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	77,470,257 - 77,486,475 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	76,975,191 - 76,991,409 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	72,439,697 - 72,455,915 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	75,365,763 - 75,382,014 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,365,822 - 75,381,555 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	74,724,491 - 74,737,715 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	76,364,360 - 76,374,956 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	71,769,971 - 71,786,071 (+)	NCBI		Celera
RGSC_v3.1	10	76,338,908 - 76,391,952 (+)	NCBI
Cytogenetic Map	10	q26	NCBI

VEZF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	57,971,552 - 57,988,254 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	57,971,547 - 57,988,389 (-)	Ensembl			hg38	GRCh38
GRCh37	17	56,048,913 - 56,065,615 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	53,403,909 - 53,420,614 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	53,403,908 - 53,420,614	NCBI
Celera	17	52,510,684 - 52,527,395 (-)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	51,410,091 - 51,421,949 (-)	NCBI		HuRef
CHM1_1	17	56,114,028 - 56,130,738 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	58,845,554 - 58,862,256 (-)	NCBI		T2T-CHM13v2.0

Vezf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	87,959,084 - 87,975,555 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	87,959,105 - 87,975,555 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	88,068,199 - 88,084,729 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	88,068,279 - 88,084,729 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	87,881,843 - 87,898,231 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	87,884,474 - 87,900,918 (+)	NCBI		MGSCv36	mm8
Celera	11	97,674,942 - 97,686,628 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.4	NCBI

Vezf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	5,014,218 - 5,032,225 (+)	Ensembl
ChiLan1.0	NW_004955451	5,014,310 - 5,031,080 (+)	NCBI	ChiLan1.0	ChiLan1.0

VEZF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	74,147,618 - 74,164,374 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	78,958,555 - 78,975,260 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	52,051,766 - 52,068,415 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	56,908,627 - 56,922,252 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	56,908,627 - 56,923,740 (-)	Ensembl			panPan2	panpan1.1

VEZF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	32,661,755 - 32,676,397 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	32,663,666 - 32,676,421 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	31,899,072 - 31,914,848 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	33,468,514 - 33,484,292 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	33,470,067 - 33,484,270 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	32,253,171 - 32,268,939 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	32,536,443 - 32,552,224 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	32,620,156 - 32,635,937 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vezf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	31,985,033 - 32,000,963 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	5,077,732 - 5,088,967 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	5,074,832 - 5,090,019 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VEZF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,245,884 - 34,263,538 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	34,245,886 - 34,263,806 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	35,065,865 - 35,082,348 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VEZF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,411,805 - 35,428,423 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	35,411,738 - 35,428,419 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	6,228,608 - 6,245,407 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vezf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	12,836,089 - 12,853,589 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624795	12,837,197 - 12,871,169 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vezf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	82,727,346 - 82,743,536 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vezf1
102 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	28
Count of miRNA genes:	24
Interacting mature miRNAs:	27
Transcripts:	ENSRNOT00000055705
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	10	67439473	73950209	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	52162433	75582749	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	56868440	76129113	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	67476608	73695498	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	73049656	94495280	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	67476608	73695498	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	64139597	83061459	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61843633	83061236	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

BE108419

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	72,858,876 - 72,859,027 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,354,207 - 75,354,357	NCBI	Rnor6.0
Rnor_5.0	10	74,746,252 - 74,746,402	UniSTS	Rnor5.0
RGSC_v3.4	10	76,360,253 - 76,360,403	UniSTS	RGSC3.4
Celera	10	71,768,997 - 71,769,147	UniSTS
Cytogenetic Map	10	q26	UniSTS

Vezf1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	72,864,974 - 72,865,951 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,370,878 - 75,371,854	NCBI	Rnor6.0
Rnor_5.0	10	74,734,651 - 74,735,627	UniSTS	Rnor5.0
RGSC_v3.4	10	76,366,448 - 76,367,424	UniSTS	RGSC3.4
Celera	10	71,774,935 - 71,775,911	UniSTS
Cytogenetic Map	10	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001304355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ108271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ115896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055705 ⟹ ENSRNOP00000052564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,360,871 - 73,373,320 (+)	Ensembl
mRatBN7.2 Ensembl	10	72,863,662 - 72,876,111 (+)	Ensembl
Rnor_6.0 Ensembl	10	75,365,822 - 75,381,555 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096619 ⟹ ENSRNOP00000078894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,356,985 - 73,373,318 (+)	Ensembl
mRatBN7.2 Ensembl	10	72,859,877 - 72,876,106 (+)	Ensembl

RefSeq Acc Id:

NM_001304355 ⟹ NP_001291284

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,357,114 - 73,373,320 (+)	NCBI
mRatBN7.2	10	72,859,904 - 72,876,111 (+)	NCBI
Rnor_6.0	10	75,365,811 - 75,382,014 (+)	NCBI
Celera	10	71,769,971 - 71,786,071 (+)	NCBI

Sequence:

show sequence

GCCGCCGCCGCCGCCTGCTTTGTTGTCGCCTCCTCCGGCTGAGGAGGCCCCCGAGCGGGGGGAG
TGGGGAGGAGGGGGTCGGCCGCCGCAGCCATGGAGGCCAACTGGACCGCGTTCCTGTTCCAGGC
CCATGAAGCGTCCCATCACCAACAGCAGGCAGCGCAGAACAGCTTGCTGCCCCTCCTGAGTTCT
GCTGTGGAGCCCCCTGATCAGAAACCGTTGCTTCCAATACCAATTACTCAGAAACCCCAGGCTG
CACCAGAGACATTAAAGGATGCCATTGGGATTAAAAAAGAAAAACCCAAAACTTCGTTTGTGTG
CACTTACTGCAGTAAAGCATTCAGGGACAGCTATCACCTGAGGCGCCATCAGTCCTGCCACACA
GGGATCAAGCTGGTGTCTCGGGCAAAGAAAACCCCCACCACGGTGGTTCCCCTTATCTCCACCA
TTGCTGGGGACAGCAGCCGAACTTCGCTGGTTTCAACTATTGCAGGCATCTTGTCAACAGTCAC
TACATCGTCCTCGGGCACCAACCCCAGCAGCAGTGCCAGTACCACAGCAATGCCTGTGCCCCAA
TCTGTCAAGAAGCCTAGTAAGCCTGTCAAGAAGAACCATGCCTGTGAGATGTGTGGGAAGGCCT
TCCGGGATGTGTACCACCTCAATCGACACAAGCTTTCCCATTCGGACGAAAAGCCTTTTGAGTG
TCCCATTTGTAACCAGCGCTTCAAGAGGAAGGACCGGATGACTTACCACGTGAGGTCTCATGAG
GGAGGCATCACCAAACCATATACTTGCAGTGTTTGTGGGAAAGGCTTCTCCAGGCCTGACCACC
TAAGCTGTCATGTAAAACATGTGCATTCAACAGAAAGACCCTTCAAATGCCAAACGTGCACTGC
TGCCTTTGCCACCAAAGACAGACTACGGACACACATGGTGCGCCATGAAGGCAAGGTATCATGT
AACATCTGTGGGAAGCTCTTGAGTGCAGCGTATATCACCAGCCACTTAAAGACACATGGGCAGA
GCCAAAGTATCAACTGTAACACGTGTAAACAAGGCATCAGCAAAACTTGCATGAGTGAGGAGAC
CAGCAATCAGAAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAA
CATGTGACGAGCTGGCCAGGGAAGCAGGTAGAGACACTGAGACTATGGGAAGAAGCTGTCAAAG
CGAGAAAGAAAGAAGCTGCCAACCTGTGCCAAACCTCCACGGCTGCTACGACACCTGTGACTCT
CACTACTCCATTCAATATAACATCCTCTGTGTCGTCTGGGACTATGTCAAACCCAGTCACAGTG
GCAGCTGCAATGAGCATGAGAAGCCCAGTAAATGTTTCAAGTGCAGTTAATATAACCAGCCCAA
TGAACATAGGGCATCCTGTAACCATAACCAGCCCGTTGTCCATGACCTCTCCTTTAACACTCAC
TACCCCAGTCAACCTCCCGACCCCTGTAACGGCCCCAGTGAACATAGCACACCCGGTCACCATC
ACCTCGCCAATGAACCTGCCCACGCCTATGACATTAGCTGCCCCTCTCAATATAGCAATGAGGC
CTGTAGAAAGTATGCCTTTCCTGCCCCAAGCTTTGCCTACGTCACCGCCTTGGTAAACAGTATT
ATAAAGTCAAAATGTGGGTAAAAGTAAATATTTACCAGCAACTTACCTTTAGTTGATAAAAGCA
AAAGCAGACTATGAAATTGGGAGGTTTTATTATATTAGTTAACAAGAGTGTAGTAGCTCCAGTT
TTGCTGGGGTTGTTCAAAGTAGGGTGTGTGTAACGTCTCACTGGACCACTTTAGTCTAACCAGG
AACCCTTTAGCTGACAGCATTGCTTACGCAGGAAAGTAGCTGGCAAGGTGAGTGCCAGAATTCA
AACCAATCATAAAATCCATTCAAAATAAAGAAGCATTATTTGTTTTTAATACATCAGAATCATT
TTATTGTAAACACTAGCAGAGTTTCTCCCTCGGTACAAGGTGGGTGGTTTTAACCTGGAGTCTA
ACCCACAGACTGAGAGCCGTGTAGCAGTGTCTGTGGTTTTGTTTGTATGAGTGAATAGAGGCAC
CGTCATAATAAAATGCATCTCAGAGAATATGCATTTTACCTTTGGGAATATGTTAATTTCAGGC
AGCATTCCCTATGGGAAAGGTGATACCAGCTCTGATATGCAAAGCATATGATAATTTATCATTC
TAACTTCAACATATAATAGGGATTGTGACCTGATATTTGGAGATGTAAATATTGCTCAGCATAT
TAATCCTGATGGAATATAGCATTGTAGTTGACTTTTTTTAAAAAAAAACAAAAACTTTAAAAAA
AAAAAACAAACCAACAAATTGTGTTTTGATGAGAAAAGGCTGCGGCTGACTGAGGGGAAGTCAG
GTGTGCACGCAGCAGGCTCCTTAGCGGGTCAGTAGATCCTGTTCCAAGAGTGACGAGAACTTTG
GAACAGTTTAAATCTATTGCTTTAAATTGGAAGACATTGGAGGCACTGGGATGTGACATGCCCC
TCTCTCTCCCAATCAGCGTCTGTTGATGCTACAACAGGCACAGGTGTGCTAGATGCTCACTAGA
GTTTATGTCTTATATGAAATTGTATACAGTTTTTATTCTAACCACTAACTAGGTAGTATGCCCC
TTCAGAACAGCAGAGTGTATCCCCTTCCTTCTGTTTAATCAAGTATTGTGCTTTGTAAATATGG
ACATCACTTTCTTTTCCTTTGTATCCGCTTTCTGGAGTTTTCAGGGAGGCAGCTGTCTGCATGC
TCCATGGAAACACCTGCAATGATTGTGCACGTTGAGACATGTGCTTTTTGTTTCTTAGCGGGAT
GCTTTACCCCTGTACATACGGTAGAAACCAAAAGCTAGGGGAACAGACACTCTATACACCATCA
TGCCACACTTCATGTTTTCAAAGCATTGCGTTAGAGAAGAGTTCATTCAAACCAAGATGCTGTA
ATTGTTTTTTTACATTGCTATATGTTTTGGGTCTTTTTCATTTTTAATCTTGCATTTAAGAGAT
ATGGAAATGAGTTTTAGCCCTGCAGAATGCATGCAGGGCTGTCACACCAGATGACTTCCGTTTG
TTTATACCCCACTGTGTCAGTACAAACATCAAAATACCATGCGTCTGAGGCAGACTTCCTACAT
CAGGGACAGGTATCTGTGTGTCACTATACAAAACAGTTCTAGGGGATGAACTACATAGTAAAAA
AATTAAAATAAATAGTACCTAGTGTAAAATAATTTTATAAATGATCTTTTGTACTTTAGGACAT
TAAATTGTACAACTTTTGTATATATAAAGCTTAGGAACTTTCTGTTTAGCAGGAAGGCAACACA
TTCCTACACTTTTAATGTATATGTTTGTTATAATGTCCATGTAAACATGCCCTATGTTTGTGCC
TTTTAATTAGTTTGTCTCAATAAACAAAATGTAGAGAAAAATATGTAGCTATGACTTTGTTACA
ACAGTTCTTATCCACAGTTGAAAATGGTTTGTTTTTAAGTGTAGATCATTATGTGTGAGCTCCT
GCAAGGGCTCATGGGGGAAGGCCTAGGGATGGCACTGCTGAGGCCCTGGAGGGCAGTGGTCACG
TGCGGAGGAAACCCTCATTTCCTGGCATGTGTTCTGCCCGCTGGGCCTTGTCATCTCTTGTGCT
GGCAGCCATGGTCTTTCTGGCCAGACAACCCAGGCCTCCTCCACAGTGGCCAAGGAGCAGTCCT
CAAAGTGGGCAGGTGTGGGCCCTTCCCCCAGGCTTCAGCGTGGTCACAAGATCCTGAAAGTATT
AGTTCTGACGGAACAAAAGGTATCTACTAGAAATGATTGTAAACAGGAGTGAGACTTCATTGTA
TGACTTCGGTTAAAATGCTATTTTGTATGCATACTTTATTCACGTAAGAAGCTTGTCTGCAATA
ATAAAGCCACGCTGTGTCTTCTTTGGGGAGGGAGAGAGTTGAAGCGGGATGGGCGAGGGTAGGG
GATTGCAGAGGGGGCACAAACAGGCTGTGGGGTGAAATCCTGTGTCTTGGAACTGAAACTGATG
AACTGATTCAACCGTGTGTCGAAGGCACCGACGGCCACCACTCTACAAAAGGCAGAGTATGTTT
TCCCTCCTGGTTGTAACCCAGCGGAGAGCTTTCCCTTTATCAGATTGGCAGCTAAACAGTTGTA
TTAGATAATCTTCAACTCTGACATCCAGCCTGTTCTGCTTGCTCTAGGGCTCGCTGCTTGGCCT
GCATCTACCTTTTACTGTGTATTCATTTCCCTCCTAAGGTGTGCTCCTAAATGAAGGTTTCTAT
GTACGCAGATGATGATTTTACCTGTCAATACCAGCACTGTATTACTAACATGCAAAATACTGCA
GATTTATTTTGACAAATTAAAGTTAACCAGTCACAACTGTTA

hide sequence

RefSeq Acc Id:

XM_008768166 ⟹ XP_008766388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,356,872 - 73,373,320 (+)	NCBI
mRatBN7.2	10	72,859,669 - 72,876,111 (+)	NCBI
Rnor_6.0	10	75,365,763 - 75,382,012 (+)	NCBI

Sequence:

show sequence

CGCGCTCGGCGCTGCCATGTTGAGGAAGCCGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCGCCT
GCTTTGTTGTCGCCTCCTCCGGCTGAGGAGGCCCCCGAGCGGGGGGAGTGGGGAGGAGGGGGTC
GGCCGCCGCAGCCATGGAGGCCAACTGGACCGCGTTCCTGTTCCAGGCCCATGAAGCGTCCCAT
CACCAACAGCAGGCAGCGCAGAACAGCTTGCTGCCCCTCCTGAGTTCTGCTGTGGAGCCCCCTG
ATCAGAAACCGTTGCTTCCAATACCAATTACTCAGAAACCCCAGGCTGCACCAGAGACATTAAA
GGATGCCATTGGGATTAAAAAAGAAAAACCCAAAACTTCGTTTGTGTGCACTTACTGCAGTAAA
GCATTCAGGGACAGCTATCACCTGAGGCGCCATCAGTCCTGCCACACAGGGATCAAGCTGGTGT
CTCGGGCAAAGAAAACCCCCACCACGGTGGTTCCCCTTATCTCCACCATTGCTGGGGACAGCAG
CCGAACTTCGCTGGTTTCAACTATTGCAGGCATCTTGTCAACAGTCACTACATCGTCCTCGGGC
ACCAACCCCAGCAGCAGTGCCAGTACCACAGCAATGCCTGTGCCCCAATCTGTCAAGAAGCCTA
GTAAGCCTGTCAAGAAGAACCATGCCTGTGAGATGTGTGGGAAGGCCTTCCGGGATGTGTACCA
CCTCAATCGACACAAGCTTTCCCATTCGGACGAAAAGCCTTTTGAGTGTCCCATTTGTAACCAG
CGCTTCAAGAGGAAGGACCGGATGACTTACCACGTGAGGTCTCATGAGGGAGGCATCACCAAAC
CATATACTTGCAGTGTTTGTGGGAAAGGCTTCTCCAGGCCTGACCACCTAAGCTGTCATGTAAA
ACATGTGCATTCAACAGAAAGACCCTTCAAATGCCAATTTTCCTCCCTCATGCAGACGTGCACT
GCTGCCTTTGCCACCAAAGACAGACTACGGACACACATGGTGCGCCATGAAGGCAAGGTATCAT
GTAACATCTGTGGGAAGCTCTTGAGTGCAGCGTATATCACCAGCCACTTAAAGACACATGGGCA
GAGCCAAAGTATCAACTGTAACACGTGTAAACAAGGCATCAGCAAAACTTGCATGAGTGAGGAG
ACCAGCAATCAGAAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAAC
AACATGTGACGAGCTGGCCAGGGAAGCAGGTAGAGACACTGAGACTATGGGAAGAAGCTGTCAA
AGCGAGAAAGAAAGAAGCTGCCAACCTGTGCCAAACCTCCACGGCTGCTACGACACCTGTGACT
CTCACTACTCCATTCAATATAACATCCTCTGTGTCGTCTGGGACTATGTCAAACCCAGTCACAG
TGGCAGCTGCAATGAGCATGAGAAGCCCAGTAAATGTTTCAAGTGCAGTTAATATAACCAGCCC
AATGAACATAGGGCATCCTGTAACCATAACCAGCCCGTTGTCCATGACCTCTCCTTTAACACTC
ACTACCCCAGTCAACCTCCCGACCCCTGTAACGGCCCCAGTGAACATAGCACACCCGGTCACCA
TCACCTCGCCAATGAACCTGCCCACGCCTATGACATTAGCTGCCCCTCTCAATATAGCAATGAG
GCCTGTAGAAAGTATGCCTTTCCTGCCCCAAGCTTTGCCTACGTCACCGCCTTGGTAAACAGTA
TTATAAAGTCAAAATGTGGGTAAAAGTAAATATTTACCAGCAACTTACCTTTAGTTGATAAAAG
CAAAAGCAGACTATGAAATTGGGAGGTTTTATTATATTAGTTAACAAGAGTGTAGTAGCTCCAG
TTTTGCTGGGGTTGTTCAAAGTAGGGTGTGTGTAACGTCTCACTGGACCACTTTAGTCTAACCA
GGAACCCTTTAGCTGACAGCATTGCTTACGCAGGAAAGTAGCTGGCAAGGTGAGTGCCAGAATT
CAAACCAATCATAAAATCCATTCAAAATAAAGAAGCATTATTTGTTTTTAATACATCAGAATCA
TTTTATTGTAAACACTAGCAGAGTTTCTCCCTCGGTACAAGGTGGGTGGTTTTAACCTGGAGTC
TAACCCACAGACTGAGAGCCGTGTAGCAGTGTCTGTGGTTTTGTTTGTATGAGTGAATAGAGGC
ACCGTCATAATAAAATGCATCTCAGAGAATATGCATTTTACCTTTGGGAATATGTTAATTTCAG
GCAGCATTCCCTATGGGAAAGGTGATACCAGCTCTGATATGCAAAGCATATGATAATTTATCAT
TCTAACTTCAACATATAATAGGGATTGTGACCTGATATTTGGAGATGTAAATATTGCTCAGCAT
ATTAATCCTGATGGAATATAGCATTGTAGTTGACTTTTTTTAAAAAAAAACAAAAACTTTAAAA
AAAAAAAACAAACCAACAAATTGTGTTTTGATGAGAAAAGGCTGCGGCTGACTGAGGGGAAGTC
AGGTGTGCACGCAGCAGGCTCCTTAGCGGGTCAGTAGATCCTGTTCCAAGAGTGACGAGAACTT
TGGAACAGTTTAAATCTATTGCTTTAAATTGGAAGACATTGGAGGCACTGGGATGTGACATGCC
CCTCTCTCTCCCAATCAGCGTCTGTTGATGCTACAACAGGCACAGGTGTGCTAGATGCTCACTA
GAGTTTATGTCTTATATGAAATTGTATACAGTTTTTATTCTAACCACTAACTAGGTAGTATGCC
CCTTCAGAACAGCAGAGTGTATCCCCTTCCTTCTGTTTAATCAAGTATTGTGCTTTGTAAATAT
GGACATCACTTTCTTTTCCTTTGTATCCGCTTTCTGGAGTTTTCAGGGAGGCAGCTGTCTGCAT
GCTCCATGGAAACACCTGCAATGATTGTGCACGTTGAGACATGTGCTTTTTGTTTCTTAGCGGG
ATGCTTTACCCCTGTACATACGGTAGAAACCAAAAGCTAGGGGAACAGACACTCTATACACCAT
CATGCCACACTTCATGTTTTCAAAGCATTGCGTTAGAGAAGAGTTCATTCAAACCAAGATGCTG
TAATTGTTTTTTTACATTGCTATATGTTTTGGGTCTTTTTCATTTTTAATCTTGCATTTAAGAG
ATATGGAAATGAGTTTTAGCCCTGCAGAATGCATGCAGGGCTGTCACACCAGATGACTTCCGTT
TGTTTATACCCCACTGTGTCAGTACAAACATCAAAATACCATGCGTCTGAGGCAGACTTCCTAC
ATCAGGGACAGGTATCTGTGTGTCACTATACAAAACAGTTCTAGGGGATGAACTACATAGTAAA
AAAATTAAAATAAATAGTACCTAGTGTAAAATAATTTTATAAATGATCTTTTGTACTTTAGGAC
ATTAAATTGTACAACTTTTGTATATATAAAGCTTAGGAACTTTCTGTTTAGCAGGAAGGCAACA
CATTCCTACACTTTTAATGTATATGTTTGTTATAATGTCCATGTAAACATGCCCTATGTTTGTG
CCTTTTAATTAGTTTGTCTCAATAAACAAAATGTAGAGAAAAATATGTAGCTATGACTTTGTTA
CAACAGTTCTTATCCACAGTTGAAAATGGTTTGTTTTTAAGTGTAGATCATTATGTGTGAGCTC
CTGCAAGGGCTCATGGGGGAAGGCCTAGGGATGGCACTGCTGAGGCCCTGGAGGGCAGTGGTCA
CGTGCGGAGGAAACCCTCATTTCCTGGCATGTGTTCTGCCCGCTGGGCCTTGTCATCTCTTGTG
CTGGCAGCCATGGTCTTTCTGGCCAGACAACCCAGGCCTCCTCCACAGTGGCCAAGGAGCAGTC
CTCAAAGTGGGCAGGTGTGGGCCCTTCCCCCAGGCTTCAGCGTGGTCACAAGATCCTGAAAGTA
TTAGTTCTGACGGAACAAAAGGTATCTACTAGAAATGATTGTAAACAGGAGTGAGACTTCATTG
TATGACTTCGGTTAAAATGCTATTTTGTATGCATACTTTATTCACGTAAGAAGCTTGTCTGCAA
TAATAAAGCCACGCTGTGTCTTCTTTGGGGAGGGAGAGAGTTGAAGCGGGATGGGCGAGGGTAG
GGGATTGCAGAGGGGGCACAAACAGGCTGTGGGGTGAAATCCTGTGTCTTGGAACTGAAACTGA
TGAACTGATTCAACCGTGTGTCGAAGGCACCGACGGCCACCACTCTACAAAAGGCAGAGTATGT
TTTCCCTCCTGGTTGTAACCCAGCGGAGAGCTTTCCCTTTATCAGATTGGCAGCTAAACAGTTG
TATTAGATAATCTTCAACTCTGACATCCAGCCTGTTCTGCTTGCTCTAGGGCTCGCTGCTTGGC
CTGCATCTACCTTTTACTGTGTATTCATTTCCCTCCTAAGGTGTGCTCCTAAATGAAGGTTTCT
ATGTACGCAGATGATGATTTTACCTGTCAATACCAGCACTGTATTACTAACATGCAAAATACTG
CAGATTTATTTTGACAAATTAAAGTTAACCAGTCACAACTGT

hide sequence

RefSeq Acc Id:

XM_063268707 ⟹ XP_063124777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,341,666 - 73,370,084 (+)	NCBI

RefSeq Acc Id:

XM_063268708 ⟹ XP_063124778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,356,872 - 73,371,240 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001291284	(Get FASTA)	NCBI Sequence Viewer
	XP_008766388	(Get FASTA)	NCBI Sequence Viewer
	XP_063124777	(Get FASTA)	NCBI Sequence Viewer
	XP_063124778	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052564.5
	ENSRNOP00000078894
	ENSRNOP00000078894.2

RefSeq Acc Id:	XP_008766388 ⟸ XM_008768166
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZLS0 (UniProtKB/TrEMBL), F1M8R0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEANWTAFLFQAHEASHHQQQAAQNSLLPLLSSAVEPPDQKPLLPIPITQKPQAAPETLKDAIG IKKEKPKTSFVCTYCSKAFRDSYHLRRHQSCHTGIKLVSRAKKTPTTVVPLISTIAGDSSRTSL VSTIAGILSTVTTSSSGTNPSSSASTTAMPVPQSVKKPSKPVKKNHACEMCGKAFRDVYHLNRH KLSHSDEKPFECPICNQRFKRKDRMTYHVRSHEGGITKPYTCSVCGKGFSRPDHLSCHVKHVHS TERPFKCQFSSLMQTCTAAFATKDRLRTHMVRHEGKVSCNICGKLLSAAYITSHLKTHGQSQSI NCNTCKQGISKTCMSEETSNQKQQQQQQQQQQQQQQQQQHVTSWPGKQVETLRLWEEAVKARKK EAANLCQTSTAATTPVTLTTPFNITSSVSSGTMSNPVTVAAAMSMRSPVNVSSAVNITSPMNIG HPVTITSPLSMTSPLTLTTPVNLPTPVTAPVNIAHPVTITSPMNLPTPMTLAAPLNIAMRPVES MPFLPQALPTSPPW hide sequence

RefSeq Acc Id:

NP_001291284 ⟸ NM_001304355

- UniProtKB:

F1M8R0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEANWTAFLFQAHEASHHQQQAAQNSLLPLLSSAVEPPDQKPLLPIPITQKPQAAPETLKDAIG
IKKEKPKTSFVCTYCSKAFRDSYHLRRHQSCHTGIKLVSRAKKTPTTVVPLISTIAGDSSRTSL
VSTIAGILSTVTTSSSGTNPSSSASTTAMPVPQSVKKPSKPVKKNHACEMCGKAFRDVYHLNRH
KLSHSDEKPFECPICNQRFKRKDRMTYHVRSHEGGITKPYTCSVCGKGFSRPDHLSCHVKHVHS
TERPFKCQTCTAAFATKDRLRTHMVRHEGKVSCNICGKLLSAAYITSHLKTHGQSQSINCNTCK
QGISKTCMSEETSNQKQQQQQQQQQQQQQQQQQHVTSWPGKQVETLRLWEEAVKARKKEAANLC
QTSTAATTPVTLTTPFNITSSVSSGTMSNPVTVAAAMSMRSPVNVSSAVNITSPMNIGHPVTIT
SPLSMTSPLTLTTPVNLPTPVTAPVNIAHPVTITSPMNLPTPMTLAAPLNIAMRPVESMPFLPQ
ALPTSPPW

hide sequence

Ensembl Acc Id:

ENSRNOP00000052564 ⟸ ENSRNOT00000055705

Ensembl Acc Id:

ENSRNOP00000078894 ⟸ ENSRNOT00000096619

RefSeq Acc Id:	XP_063124777 ⟸ XM_063268707
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063124778 ⟸ XM_063268708
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M8R0-F1-model_v2	AlphaFold	F1M8R0	1-520	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697583

Promoter ID:

EPDNEW_R8104

Type:

initiation region

Name:

Vezf1_1

Description:

vascular endothelial zinc finger 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	75,365,781 - 75,365,841	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308058	AgrOrtholog
BioCyc Gene	G2FUF-23730	BioCyc
Ensembl Genes	ENSRNOG00000009819	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055705.6	UniProtKB/TrEMBL
	ENSRNOT00000096619	ENTREZGENE
	ENSRNOT00000096619.2	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Zinc_finger	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	287615	ENTREZGENE
PANTHER	C2H2-TYPE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 436	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_4	UniProtKB/TrEMBL
PhenoGen	Vezf1	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009819	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I5ZLS0	ENTREZGENE, UniProtKB/TrEMBL
	F1M8R0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Vezf1	vascular endothelial zinc finger 1	Vezf1_predicted	vascular endothelial zinc finger 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Vezf1_predicted	vascular endothelial zinc finger 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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