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Gene: U2surp (U2 snRNP-associated SURP domain containing) Rattus norvegicus

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Symbol:

U2surp

Name:

U2 snRNP-associated SURP domain containing

RGD ID:

1307882

Description:

Predicted to enable RNA binding activity. Predicted to be involved in RNA processing. Predicted to be located in nucleoplasm. Predicted to be part of U2 snRNP. Predicted to be active in nucleus. Orthologous to human U2SURP (U2 snRNP associated SURP domain containing); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC315903; RGD1307882; similar to CG9346-PA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Related Pseudogenes:

U2surp-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	104,898,580 - 104,963,642 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	104,898,425 - 104,955,422 (-)	Ensembl				GRCr8
mRatBN7.2	8	96,018,932 - 96,075,795 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	96,022,957 - 96,075,691 (-)	Ensembl				mRatBN7.2
Rnor_6.0	8	103,242,095 - 103,299,082 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	103,246,558 - 103,298,927 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	102,700,388 - 102,757,363 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	100,558,095 - 100,611,422 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	95,468,620 - 95,526,050 (-)	NCBI		Celera
RGSC_v3.1	8	100,578,138 - 100,630,883 (-)	NCBI
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(S)-nicotine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

C60 fullerene (EXP)

caffeine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

clotrimazole (EXP)

crocidolite asbestos (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hinokiflavone (ISO)

indometacin (ISO)

ivermectin (ISO)

ketamine (EXP)

mercury dichloride (ISO)

methapyrilene (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel dichloride (ISO)

nicotine (ISO)

paracetamol (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

sodium arsenate (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

vincristine (ISO)

vorinostat (ISO)

Yessotoxin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

RNA processing (IEA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

U2 snRNP (IEA,ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20858735	PMID:22681889	PMID:25931508	PMID:31505169

Genomics

Comparative Map Data

U2surp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	104,898,580 - 104,963,642 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	104,898,425 - 104,955,422 (-)	Ensembl				GRCr8
mRatBN7.2	8	96,018,932 - 96,075,795 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	96,022,957 - 96,075,691 (-)	Ensembl				mRatBN7.2
Rnor_6.0	8	103,242,095 - 103,299,082 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	103,246,558 - 103,298,927 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	102,700,388 - 102,757,363 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	100,558,095 - 100,611,422 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	95,468,620 - 95,526,050 (-)	NCBI		Celera
RGSC_v3.1	8	100,578,138 - 100,630,883 (-)	NCBI
Cytogenetic Map	8	q31	NCBI

U2SURP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	143,001,570 - 143,060,725 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	142,964,497 - 143,060,725 (+)	Ensembl			hg38	GRCh38
GRCh37	3	142,720,412 - 142,779,567 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	144,203,062 - 144,262,257 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	141,143,870 - 141,202,968 (+)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI
HuRef	3	140,093,023 - 140,151,897 (+)	NCBI		HuRef
CHM1_1	3	142,683,499 - 142,742,425 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	145,748,812 - 145,808,123 (+)	NCBI		T2T-CHM13v2.0

U2surp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	95,338,947 - 95,394,049 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	95,338,951 - 95,394,049 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	95,456,894 - 95,511,996 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	95,456,898 - 95,511,996 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	95,357,313 - 95,412,415 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	95,270,329 - 95,321,348 (-)	NCBI		MGSCv36	mm8
Celera	9	95,019,827 - 95,074,865 (-)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	50.11	NCBI

U2surp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955508	2,881,818 - 2,930,480 (-)	Ensembl
ChiLan1.0	NW_004955508	2,880,638 - 2,931,146 (-)	NCBI	ChiLan1.0	ChiLan1.0

U2SURP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	140,910,006 - 140,970,204 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	140,914,754 - 140,974,574 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	140,035,004 - 140,092,852 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	147,626,911 - 147,683,958 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

U2SURP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	38,596,544 - 38,646,784 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	38,596,643 - 38,646,401 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	38,522,273 - 38,576,356 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	39,128,392 - 39,179,063 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	39,128,490 - 39,179,495 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	38,811,868 - 38,862,506 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	38,892,825 - 38,946,901 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	39,130,982 - 39,185,239 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

U2surp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	77,856,173 - 77,913,938 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936540	4,595,385 - 4,645,088 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936540	4,595,316 - 4,645,490 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

U2SURP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	83,704,587 - 83,759,971 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	83,704,501 - 83,759,800 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	91,478,493 - 91,531,522 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

U2SURP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	47,573,425 - 47,630,634 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	47,572,403 - 47,630,611 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	20,505,636 - 20,563,228 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

U2surp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	19,645,733 - 19,694,866 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

U2surp
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	86,922,472 - 86,976,323 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in U2surp
538 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	69
Count of miRNA genes:	56
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000011609, ENSRNOT00000046873
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	62848139	107848139	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	62848139	107848139	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	62970527	107970527	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	62848139	107848139	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	62848139	107848139	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	62848139	107848139	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	62848139	107848139	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
8693654	Alc32	Alcohol consumption QTL 32	2	0.755	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	8	97492344	116428905	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	62848139	107848139	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	63404444	108404444	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	62963099	107963099	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	62982864	107982864	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

BF386191

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	96,076,084 - 96,076,247 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	103,299,342 - 103,299,504	NCBI	Rnor6.0
Rnor_5.0	8	102,757,635 - 102,757,797	UniSTS	Rnor5.0
RGSC_v3.4	8	100,611,709 - 100,611,871	UniSTS	RGSC3.4
Celera	8	95,526,360 - 95,526,522	UniSTS
RH 3.4 Map	8	1055.5	UniSTS
Cytogenetic Map	8	q31	UniSTS

D15S984

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	96,075,309 - 96,076,004 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	103,298,567 - 103,299,261	NCBI	Rnor6.0
Rnor_5.0	8	102,756,860 - 102,757,554	UniSTS	Rnor5.0
RGSC_v3.4	8	100,610,934 - 100,611,628	UniSTS	RGSC3.4
Celera	8	95,525,585 - 95,526,279	UniSTS
Cytogenetic Map	8	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001065014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002727119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002729954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_236501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ226547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011609 ⟹ ENSRNOP00000011609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	104,902,044 - 104,955,422 (-)	Ensembl
mRatBN7.2 Ensembl	8	96,022,957 - 96,075,691 (-)	Ensembl
Rnor_6.0 Ensembl	8	103,246,558 - 103,298,927 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000046873 ⟹ ENSRNOP00000048365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	104,898,425 - 104,955,422 (-)	Ensembl
mRatBN7.2 Ensembl	8	96,023,288 - 96,075,678 (-)	Ensembl
Rnor_6.0 Ensembl	8	103,246,558 - 103,298,927 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116411 ⟹ ENSRNOP00000083935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	104,902,044 - 104,955,422 (-)	Ensembl
mRatBN7.2 Ensembl	8	96,022,957 - 96,075,691 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164576 ⟹ ENSRNOP00000106231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	104,930,901 - 104,955,422 (-)	Ensembl

RefSeq Acc Id:

XM_002729954 ⟹ XP_002730000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,898,580 - 104,955,436 (-)	NCBI
mRatBN7.2	8	96,022,955 - 96,075,789 (-)	NCBI
Rnor_6.0	8	103,242,095 - 103,299,028 (-)	NCBI
Rnor_5.0	8	102,700,388 - 102,757,363 (-)	NCBI
RGSC_v3.4	8	100,558,095 - 100,611,422 (-)	RGD

Sequence:

show sequence

CTGGGCCTGGCAGGCTTCTGGCGCGCTCCGCTGATATCTGTTCTTTCGGTGCTCGACTCACCCG
CGCTGCTGCCTCCGCTGAAGGAGGAGCAAAGCTCAAGATGGCCGACAAAACGCCAGGCGGATCT
CAGAAGGCCAGTTCAAAGAGCCGATCATCGGATGTTCATTCATCTGGATCTTCAGATGCTCATC
CTCTTCTAGAAAACAAGCTTAAAGCATTCAGTATTGGAAAAATGAGCACAGCAAAGCGAACTCT
AAGTAAGAAGGAACAAGAGGAACTGAAGAAAAAGGAGGATGAAAAGGCAGCTGCTGAAATTTAT
GAGGAATTTCTTGCTGCTTTTGAAGGAAGTGATGGTAATAAGGTGAAAACGTTTGTTCGAGGCG
GGGTTGTTAATGCAGCTAAAGATGAACATGAAACAGATGAAAAAAGAGGTAAAATCTATAAGCC
ATCTTCAAGGTTTGCAGATCAAAAGAATCCTCCAAATCAGTCATCCAATGAAAGGCCACCATCT
CTTCTTGTGATAGAGACGAAAAAGCCTCCACTGAAGAAAGGGGAGAAGGAAAAGAAAAAAAGCA
ATTTGGAACTTTTCAAAGAAGAACTAAAACAAATTCAGGAAGAACGTGATGAGAGACATAAAAC
AAAAGGCAGGTTAAGTCGGTTTGAGCCTCCTCAGTCAGACTCTGATGGTCAGCGACGTTCCATG
GATGTGCCTTCAAGAAGAAATAGATCGTCTGGTGTTCTTGATGATTATGCACCGGGCTCACATG
ATGTAGGAGATCCCAGCACTACAAACTTATACCTCGGAAACATTAATCCACAGATGAATGAAGA
AATGCTGTGCCAAGAATTTGGAAGATTTGGACCATTAGCTAGTGTAAAAATTATGTGGCCTAGA
ACTGATGAAGAAAGAGCACGAGAAAGAAATTGTGGCTTTGTGGCTTTTATGAATAGAAGAGATG
CTGAGAGAGCTCTAAAAAATTTAAATGGAAAAATGATTATGTCTTTTGAAATGAAGTTAGGTTG
GGGTAAAGCTGTACCTATTCCTCCACACCCAATATACATTCCGCCTTCTATGATGGAACACACA
CTTCCCCCACCTCCATCCGGACTGCCTTTTAATGCGCAGCCTAGAGAGCGATTAAAAAACCCCA
ATGCTCCCATGTTACCACCACCTAAAAACAAGGAGGATTTTGAGAAGACTCTGTCGCAAGCCAT
AGTCAAAGTGGTTATCCCAACAGAAAGGAATTTACTCGCCCTGATACACCGAATGATAGAATTT
GTTGTACGTGAAGGGCCAATGTTTGAAGCTATGATTATGAACAGAGAAATCAACAATCCTATGT
TCAGGTTCTTATTTGAAAACCAGACACCAGCCCACGTTTACTACAGGTGGAAGCTTTATTCTAT
TCTGCAGGGAGATTCTCCGACAAAATGGCGGACAGAAGATTTTCGGATGTTCAAAAATGGATCC
TTTTGGAGGCCACCACCATTAAATCCATACCTTCATGGGATGTCAGAGGAGCAGGAGACAGAAG
CGTTTGTAGAAGAGCCTAGTAAAAAGGGAGCACTCAAGGAAGAACAGCGGGATAAATTAGAAGA
AATCTTGCGAGGATTAACTCCAAGGAAAAATGATATTGGAGATGCCATGGTTTTCTGTCTTAAT
AATGCTGAAGCTGCTGAAGAAATAGTGGACTGCATTACTGAGTCACTGTCTATCTTAAAGACCC
CGCTTCCCAAGAAGATTGCCAGATTATATTTGGTTTCTGATGTTTTATATAACTCTTCAGCCAA
AGTTGCCAATGCTTCATATTATAGGAAATTTTTTGAAACAAAGCTATGTCAGATATTTTCAGAC
CTCAATGCTACTTATCGTACAATTCAAGGCCATTTACAATCTGAAAATTTTAAGCAACGGGTAA
TGACCTGCTTCAGAGCATGGGAAGATTGGGCAATTTATCCAGAACCATTTTTGATCAAACTTCA
GAATATTTTCTTAGGACTTGTAAATATCATTGAAGAAAAGGAAACAGAGGATGTGCCAGATGAT
CTTGACGGTGCTCCCATTGAGGAAGAGCTTGATGGTGCTCCTCTGGAAGATGTGGATGGAATTC
CCATTGATGCTACTCCCATCGATGATCTTGATGGCGTCCCTATAAAAAGTCTCGATGATGATCT
GGATGGAGTGCCTTTGGATGCAGCTGAAGACTCAAAGAAGAATGAACCCATATTTAAAGTTGCC
CCATCAAAGTGGGAGGCTGTAGATGAATCTGAGTTGGAAGCACAAGCGGTGACAACTTCCAAGT
GGGAGTTATTTGACCAGCATGAAGAATCAGAAGAAGAAGAAAACCAAAATCAGGAAGAAGAGAG
TGAAGATGAAGAAGACACCCAGAGTTCCAAGTCGGAAGAGCATCATTTATATTCTAACCCAGTC
AGAGAAGAGATGACTGAGTCTAAGTTCTCTAAGTACTCCGAAATGAGTGAGGAGAAACGAGCTA
AGCTCCGTGAAATTGAGCTAAAAGTTATGAAGTTTCAAGATGAATTGGAATCTGGAAAGAGACC
AAAAAAACCCGGCCAAAGCTTCCAGGAGCAAGTAGAACACTACAGAGATAAACTGCTGCAGCGA
GAGAAGGAGAAAGAATTAGAAAGAGAACGAGAAAGAGACAAAAAAGATAAAGAAAAATTGGAAT
CTCGATCCAAAGACAAGAAGGAAAAGGATGAATGTACTCCAACGAGAAAAGAGAGGAAGAGACG
ACATAGCACCTCCCCCAGCCCATCTCGAAGTAGCAGTGGTCGACGAGTGAAATCCCCATCACCC
AAATCAGAGCGGTCCGAACGGTCAGAAAGGTCTCATAAAGAAAGCTCTCGGTCCAGGTCCTCTC
ACAAAGACTCCCCTAGAGATGCTAGCAAAAAAGCCAAAAGGTCACCGTCTGGTTCAAGGACACC
TAAAAGGTCTAGGCGGTCCCGGTCTAGGTCCCCGAAGAAGTCAGGGAAGAAATCCAGATCTCAG
TCCCGGTCTCCACACAGGTCTCATAAAAAGTCAAAGAAAAACAAACACTGACATATATTTTTAA
GATGCTGTCACTTATTGGAAATGCAAGTTTGTTTTGTGCCTGAATGGTTTTTTTTTTTGTTTTG
TTTTTTTAATAAAAAAAAAAAACCATACACACAAAAACAAGAAAAATTCTAATGAAAGAGCATT
CCTGGGTTTGTTTGTTTGTTTGTTTGTGAATGCATGTGTAAACTCATGAGTAACTGCACCTGTA
GACCTGTCATTGTTTTATATTGTATAAATTACTTTTGTTGTGGCTGTTTTCTCAAGATGAAATT
TTTATTGTGCTAATGAATTTCATCAGAAATGTGTACAACGGATCTGCTGGCAGTAGTAGTATTT
TGTTTTAGGATGTTGTGACTTAGACACATAATACAGATGTCTTCCCCCCCTTTTGTAGCTTTGA
CAATTTGAATTAGATTTCAAATAAAATCTGAACAGAAAACTATAATGTTGTTTTTTTGCCCAGT
TGGTGACACCAAGTCCCTTAAAGACCTACTAAGTGAATTTGGCACCATTGCTGTTTCTTATCCC
TAGTGCACTTTACAAACTCCAGTGTTCAAGTAGCTAGTGTTTTATAGTTACTAAAGTGACTTCC
AAAAGTTAAGGGACCCAGCACTCCTGTTTGGTAGGTTTTGCTTATCCATTTCTGGAAAAAGGGT
TTCAAACCCAGAGATGAGAGGGCTCGAGTGAGAGGGTACGGTGTGCATCTGTTACTGTAGTGCC
TGGTTCAAACGCCCTTTCTCAAAGAAGCAATGTGACTTCAAAACACTCAGTCCCATCTTCAGAG
CAATTAATGTATTTAGGGTTAATTTAATTTTTATCTTCTATCATGAAACAAGTTTATTTATAAA
AGGTTTTATAAAAACAGTTTACCATAGAATTCTTTTGTATAATAGTTGCTTTTTTATAATTGTC
TGTAGGTTATCTTTAAAACACTGGTATCATGATATTTGTACAAATTTGTTTGAAACAGCTTTTT
GATTTGAAGGATTTGGTTTGGAGTACAGCTTTAAATAAAAATTGAAAAAATTAAATGGTTTTCA
GGTAATTTTAACACTCAATGATTTATAAATTTAAGTAAAAAGTTGACTTAAGTCAGAGTTGAAT
TCTAACAGGAAGAACTTGGCAGTGGCCTGGGGAAGCAATAGGAAACCTTGTGAATGTCGATCCC
AGCCCCGCAGAGAGTATAGTGTAAAGGAGGTGTGGACTTGAGCCGGCCTCAGGGTCTGTCAGTT
TTGCTTTCAGGTTTGCATCTAGGTACTATGTGCAGTGTTTTGTGTTTTTTTCGGTAATAATGGA
TTGTTCGGATTTAACTTATTCTTTTAAAATCGTTTCACCTTGTTTACTTAATCTTGCCCAATCA
CAAAATAAGGCGTCTTCTCCCCGTGATTTGGGGAGTAGTCATATCAGCTGTACATAGAGTAAGG
CATGTCTTTTCCTTCTCCAACACATCTACAGCAGCTTTCGAGATGAGCCAGTCACACTGCTTTA
CATCGTGGTTCTTAGCATGAAAATATTCAGTCCTTTGTTTACCTCCTCTATTAGGAAATGCTAA
TTCCTTAAAGTTGCTCAGAATAATTAATGTGAACATTTGGTGCTGATCCTTAAAGATCTATATA
AATACAGCCATTACAAGCAGAACACATTTTCCTCCTGTGTTCATTGTCTGGGAGAATGGCATTT
TATATCTTTCTTTTAAGAAAAATAGTGTCCAATTGCCGTTAGTTGTGGTTTCCTCATTCCCTGA
GTTTTTAGGTAGACAAAGAAATAATTGGTCAGAAAGTGGTTTTCTTTTTTTCAGGCAAGTTACG
AAGGGTAGTTACTTTTCTCTCTTGATTACAACATTTTAGCTTGGTTTTGGGTGTTTATTTGTAG
TGTTTTCTACTTCATTAGATCCATGTTGTAGCTATTATAGTTAATTTTGGAATGGATAAAACCG
GCTTTCTTTTGGGTAGGCAGACAGTTACTTGACCTGATAGAATGAATTTTGGAGTTCTTTAATG
TATATATTAGGTTGCGTTGGATTTTGTTTTCTTGAATTGTAAATAGCATTAACTAGATTATTTC
CCATTTTTCTTTATGAGGAACCATCTAGAATAAGCTGTTAAAATTCACAGTGGATTCATACACT
TGTTATCCCAGCATTGAGGCTACGTGACTATATGCTCAGGAGTTGAGACCACCTTGGGCAGCAG
AGAGATCCTGTCTCATAAACAGGGATCAGAAATGGGTCTTACAAGAAGGAAGCTGTTCTACATA
TTTTTAATTATAGCTTAGTTTTCATATCTAAAGAACACTTAGCATAATTTCTGTGAGTTAAATA
TTCATAAATGATCTGAGAGTTATAGGAAAGATGGTAACCGCTATGTACCGCACAGCTGTTGGCC
TCTACTAACCACGTGTGTGAGGAGATGCTCTGTTCATCACAGCGTTCCTCACACAGGGATTCCC
TACCACCCGATGCCATTGCACTTCTCTCTACATGGGGTAGAAGTGACATGTTGGCTGCTTTCTT
ACCAAAGAGAGAGACCTGAGACTAACAAGGATTGTGAGGGTAGTTTTTGTATTTTCGTTTTCCT
GGGAGTCAGCATGTGGGGGATTCTCACTGTGGTGAGCTAGAGGTTAAGGGACTAGTGAGGCACA
AAGCCATGATCCCAAAGGATCCTTTTATTTGGTTCACAGTATTTTTGGCTTTTTTTTTTGCTAA
ATTTTGCAGAAATTTCTTTCTCTATGCTGACCTAATTTTCTTCATTGAGACCATTCCTATGAGA
ACTGTATTCTAGTTAAAGAGTGTTGGGAGAAATACTTGCTTCTGACCTCTGTGTTTTTCCCATT
CTTTAATATTCTTGAGTGCTTGAAAAATACCTTAAAAGAAATTCTGTTCATGATCAAATATAGG
TTTATTAGAAATACCCTATACACTTTTGCCTTGACGGTGGTATAAGTTCTGAGAAGTTGCATGA
TCATGAAAATAGTTGATTATGGTTAAAAATAAATAGATAAACCTGTTGCCAGAATGAGTTAACC
TATTATGACCACAGCTGTGTGATTTCTTTAGCAGAGAAAGTCGTCTTCAAAAATCAACTACCGC
TTTTCTAACACTGCATTTTCAAAATAAGCTAGTGTTTGTTGTTTTCTCTTCTGACTTGTAGTGG
GCAAGCCTACAAAGACTTGAATGCAGGTATTCGTGAAGACAGAATAAGTTTAAAGGGTCTTGTG
ATGAAAAGCTCACATTTAACAAAATGTTTAGGGTTTTCACACTTTCACGTGCATGTTTTGGAAT
AGATTTTAGGGAGTGTTTATCATCATTTTGGACTTTTTCCTGTTTTTGTTACCAACTTCCTAAG
ATTTAGCTAATAGAAGAAGACAAATCCCAGGGAAGTGTAGTGGTAGAGTAAGGGGTGGGAATGT
GCTGCTGTTCAAAGTGAGCCTTGTTCCATTGTTCAAATGTCGATGCCTCCTGTATCCAGTACCA
CCTCCTGCAGTTCTAATGTAAATGGTATGTGTATATGTATAGTTTTGTAGAGAAAACGTCCTCG
TTCACTTTCATATGTAATTGTGCTTAGAGTATCAGCGGTTTTTATCCTTTTTACTTCAGGCTCT
TGTATGTTGAGTCTCTGAAATAGCAGAGAAGACAGATTTGTAGAATGGCTCAGCCGAAGTGCCC
TGCAGTGGGACAGATGCCATGGAAGGCTAGTGGGCTGCCTTCTGGATGAGACTGGCACCGTATC
GTTCTCTACGGAAAGATCAGTTGCAAGCAAAGTGTGTAGAATTCACTTGTTTTTCTTTTAACTT
TTAATTACTTAAATAAAATCCATTGTTTCATAGTAAATGTAGACTGCGTATGGAATTTTCTGTG
TAGTTTTCTAACGGGAATTCTATGTGGCCATCTAGCTTTCAGCAGTTTCCTCCCATGCAGACTG
GTGATGGGAGGAGCTTTGTCTGTTCGCTGTAGCAACAGAGCCACTATGTTTTACGCACTTAAAC
TCTCACCAGATAGTTTCATGATAGGTGATTCCCTACTAATTAGGAAATTTCACACCCTTATTTT
CTTTGTTAAGGAAGTCTGTTCTGTTTATGTCACCGAGGAAAACAACAATGGCTATCTCACCACC
AACCTATAAATATCAGCTCGTTATTATACCTGTTTTGTTTTTAAACATAACATGGCGTCATCAC
ACTAAAACCTCCGGGTTCCTTTTTAAGGTTTTGTTTATTTTTAGTTGTGATAAAATGCTCTTGA
CAGGATTTACCATCTGAAGCATTTTTGACTGTACCATTTGCTGGTGTTAGGTGTGCTCACATTG
TTGTGTGACCAACCTCTATAACGCTTTCATTGCAAAACTGACACTGTACCTGAGTCCCCTCTCC
TCTGCCTGCCCTGTAGCCACGGTCTACTTTGTTGCTGTTTGGCTAATCTAGAAAGTGAAATATA
AACATCATTTAATTAAAATTCTTTACCGTTTGTA

hide sequence

RefSeq Acc Id:

XM_006243554 ⟹ XP_006243616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,898,580 - 104,963,642 (-)	NCBI
mRatBN7.2	8	96,022,955 - 96,075,786 (-)	NCBI
Rnor_6.0	8	103,242,095 - 103,299,032 (-)	NCBI
Rnor_5.0	8	102,700,388 - 102,757,363 (-)	NCBI

Sequence:

show sequence

GCTACTGGGCCTGGCAGGCTTCTGGCGCGCTCCGCTGATATCTGTTCTTTCGGTGCTCGACTCA
CCCGCGCTGCTGCCTCCGCTGAAGGAGGAGCAAAGCTCAAGATGGCCGACAAAACGCCAGGCGG
ATCTCAGAAGGCCAGTTCAAAGAGCCGATCATCGGATGTTCATTCATCTGGATCTTCAGATGCT
CATATGGACGCATCTGGACCCTCAGATAGCGATATGCCAAGTCGAACACGACCTAAAAGCCCAA
GAAAACACAATTATAGGAATGAAAGTGGCCGTGAAAGCCTTTGCGATTCTCCTCATCAGAATCT
CTCAAGACCTCTTCTAGAAAACAAGCTTAAAGCATTCAGTATTGGAAAAATGAGCACAGCAAAG
CGAACTCTAAGTAAGAAGGAACAAGAGGAACTGAAGAAAAAGGAGGATGAAAAGGCAGCTGCTG
AAATTTATGAGGAATTTCTTGCTGCTTTTGAAGGAAGTGATGGTAATAAGGTGAAAACGTTTGT
TCGAGGCGGGGTTGTTAATGCAGCTAAAGATGAACATGAAACAGATGAAAAAAGAGGTAAAATC
TATAAGCCATCTTCAAGGTTTGCAGATCAAAAGAATCCTCCAAATCAGTCATCCAATGAAAGGC
CACCATCTCTTCTTGTGATAGAGACGAAAAAGCCTCCACTGAAGAAAGGGGAGAAGGAAAAGAA
AAAAAGCAATTTGGAACTTTTCAAAGAAGAACTAAAACAAATTCAGGAAGAACGTGATGAGAGA
CATAAAACAAAAGGCAGGTTAAGTCGGTTTGAGCCTCCTCAGTCAGACTCTGATGGTCAGCGAC
GTTCCATGGATGTGCCTTCAAGAAGAAATAGATCGTCTGTTCTTGATGATTATGCACCGGGCTC
ACATGATGTAGGAGATCCCAGCACTACAAACTTATACCTCGGAAACATTAATCCACAGATGAAT
GAAGAAATGCTGTGCCAAGAATTTGGAAGATTTGGACCATTAGCTAGTGTAAAAATTATGTGGC
CTAGAACTGATGAAGAAAGAGCACGAGAAAGAAATTGTGGCTTTGTGGCTTTTATGAATAGAAG
AGATGCTGAGAGAGCTCTAAAAAATTTAAATGGAAAAATGATTATGTCTTTTGAAATGAAGTTA
GGTTGGGGTAAAGCTGTACCTATTCCTCCACACCCAATATACATTCCGCCTTCTATGATGGAAC
ACACACTTCCCCCACCTCCATCCGGACTGCCTTTTAATGCGCAGCCTAGAGAGCGATTAAAAAA
CCCCAATGCTCCCATGTTACCACCACCTAAAAACAAGGAGGATTTTGAGAAGACTCTGTCGCAA
GCCATAGTCAAAGTGGTTATCCCAACAGAAAGGAATTTACTCGCCCTGATACACCGAATGATAG
AATTTGTTGTACGTGAAGGGCCAATGTTTGAAGCTATGATTATGAACAGAGAAATCAACAATCC
TATGTTCAGGTTCTTATTTGAAAACCAGACACCAGCCCACGTTTACTACAGGTGGAAGCTTTAT
TCTATTCTGCAGGGAGATTCTCCGACAAAATGGCGGACAGAAGATTTTCGGATGTTCAAAAATG
GATCCTTTTGGAGGCCACCACCATTAAATCCATACCTTCATGGGATGTCAGAGGAGCAGGAGAC
AGAAGCGTTTGTAGAAGAGCCTAGTAAAAAGGGAGCACTCAAGGAAGAACAGCGGGATAAATTA
GAAGAAATCTTGCGAGGATTAACTCCAAGGAAAAATGATATTGGAGATGCCATGGTTTTCTGTC
TTAATAATGCTGAAGCTGCTGAAGAAATAGTGGACTGCATTACTGAGTCACTGTCTATCTTAAA
GACCCCGCTTCCCAAGAAGATTGCCAGATTATATTTGGTTTCTGATGTTTTATATAACTCTTCA
GCCAAAGTTGCCAATGCTTCATATTATAGGAAATTTTTTGAAACAAAGCTATGTCAGATATTTT
CAGACCTCAATGCTACTTATCGTACAATTCAAGGCCATTTACAATCTGAAAATTTTAAGCAACG
GGTAATGACCTGCTTCAGAGCATGGGAAGATTGGGCAATTTATCCAGAACCATTTTTGATCAAA
CTTCAGAATATTTTCTTAGGACTTGTAAATATCATTGAAGAAAAGGAAACAGAGGATGTGCCAG
ATGATCTTGACGGTGCTCCCATTGAGGAAGAGCTTGATGGTGCTCCTCTGGAAGATGTGGATGG
AATTCCCATTGATGCTACTCCCATCGATGATCTTGATGGCGTCCCTATAAAAAGTCTCGATGAT
GATCTGGATGGAGTGCCTTTGGATGCAGCTGAAGACTCAAAGAAGAATGAACCCATATTTAAAG
TTGCCCCATCAAAGTGGGAGGCTGTAGATGAATCTGAGTTGGAAGCACAAGCGGTGACAACTTC
CAAGTGGGAGTTATTTGACCAGCATGAAGAATCAGAAGAAGAAGAAAACCAAAATCAGGAAGAA
GAGAGTGAAGATGAAGAAGACACCCAGAGTTCCAAGTCGGAAGAGCATCATTTATATTCTAACC
CAGTCAGAGAAGAGATGACTGAGTCTAAGTTCTCTAAGTACTCCGAAATGAGTGAGGAGAAACG
AGCTAAGCTCCGTGAAATTGAGCTAAAAGTTATGAAGTTTCAAGATGAATTGGAATCTGGAAAG
AGACCAAAAAAACCCGGCCAAAGCTTCCAGGAGCAAGTAGAACACTACAGAGATAAACTGCTGC
AGCGAGAGAAGGAGAAAGAATTAGAAAGAGAACGAGAAAGAGACAAAAAAGATAAAGAAAAATT
GGAATCTCGATCCAAAGACAAGAAGGAAAAGGATGAATGTACTCCAACGAGAAAAGAGAGGAAG
AGACGACATAGCACCTCCCCCAGCCCATCTCGAAGTAGCAGTGGTCGACGAGTGAAATCCCCAT
CACCCAAATCAGAGCGGTCCGAACGGTCAGAAAGGTCTCATAAAGAAAGCTCTCGGTCCAGGTC
CTCTCACAAAGACTCCCCTAGAGATGCTAGCAAAAAAGCCAAAAGGTCACCGTCTGGTTCAAGG
ACACCTAAAAGGTCTAGGCGGTCCCGGTCTAGGTCCCCGAAGAAGTCAGGGAAGAAATCCAGAT
CTCAGTCCCGGTCTCCACACAGGTCTCATAAAAAGTCAAAGAAAAACAAACACTGACATATATT
TTTAAGATGCTGTCACTTATTGGAAATGCAAGTTTGTTTTGTGCCTGAATGGTTTTTTTTTTTG
TTTTGTTTTTTTAATAAAAAAAAAAAACCATACACACAAAAACAAGAAAAATTCTAATGAAAGA
GCATTCCTGGGTTTGTTTGTTTGTTTGTTTGTGAATGCATGTGTAAACTCATGAGTAACTGCAC
CTGTAGACCTGTCATTGTTTTATATTGTATAAATTACTTTTGTTGTGGCTGTTTTCTCAAGATG
AAATTTTTATTGTGCTAATGAATTTCATCAGAAATGTGTACAACGGATCTGCTGGCAGTAGTAG
TATTTTGTTTTAGGATGTTGTGACTTAGACACATAATACAGATGTCTTCCCCCCCTTTTGTAGC
TTTGACAATTTGAATTAGATTTCAAATAAAATCTGAACAGAAAACTATAATGTTGTTTTTTTGC
CCAGTTGGTGACACCAAGTCCCTTAAAGACCTACTAAGTGAATTTGGCACCATTGCTGTTTCTT
ATCCCTAGTGCACTTTACAAACTCCAGTGTTCAAGTAGCTAGTGTTTTATAGTTACTAAAGTGA
CTTCCAAAAGTTAAGGGACCCAGCACTCCTGTTTGGTAGGTTTTGCTTATCCATTTCTGGAAAA
AGGGTTTCAAACCCAGAGATGAGAGGGCTCGAGTGAGAGGGTACGGTGTGCATCTGTTACTGTA
GTGCCTGGTTCAAACGCCCTTTCTCAAAGAAGCAATGTGACTTCAAAACACTCAGTCCCATCTT
CAGAGCAATTAATGTATTTAGGGTTAATTTAATTTTTATCTTCTATCATGAAACAAGTTTATTT
ATAAAAGGTTTTATAAAAACAGTTTACCATAGAATTCTTTTGTATAATAGTTGCTTTTTTATAA
TTGTCTGTAGGTTATCTTTAAAACACTGGTATCATGATATTTGTACAAATTTGTTTGAAACAGC
TTTTTGATTTGAAGGATTTGGTTTGGAGTACAGCTTTAAATAAAAATTGAAAAAATTAAATGGT
TTTCAGGTAATTTTAACACTCAATGATTTATAAATTTAAGTAAAAAGTTGACTTAAGTCAGAGT
TGAATTCTAACAGGAAGAACTTGGCAGTGGCCTGGGGAAGCAATAGGAAACCTTGTGAATGTCG
ATCCCAGCCCCGCAGAGAGTATAGTGTAAAGGAGGTGTGGACTTGAGCCGGCCTCAGGGTCTGT
CAGTTTTGCTTTCAGGTTTGCATCTAGGTACTATGTGCAGTGTTTTGTGTTTTTTTCGGTAATA
ATGGATTGTTCGGATTTAACTTATTCTTTTAAAATCGTTTCACCTTGTTTACTTAATCTTGCCC
AATCACAAAATAAGGCGTCTTCTCCCCGTGATTTGGGGAGTAGTCATATCAGCTGTACATAGAG
TAAGGCATGTCTTTTCCTTCTCCAACACATCTACAGCAGCTTTCGAGATGAGCCAGTCACACTG
CTTTACATCGTGGTTCTTAGCATGAAAATATTCAGTCCTTTGTTTACCTCCTCTATTAGGAAAT
GCTAATTCCTTAAAGTTGCTCAGAATAATTAATGTGAACATTTGGTGCTGATCCTTAAAGATCT
ATATAAATACAGCCATTACAAGCAGAACACATTTTCCTCCTGTGTTCATTGTCTGGGAGAATGG
CATTTTATATCTTTCTTTTAAGAAAAATAGTGTCCAATTGCCGTTAGTTGTGGTTTCCTCATTC
CCTGAGTTTTTAGGTAGACAAAGAAATAATTGGTCAGAAAGTGGTTTTCTTTTTTTCAGGCAAG
TTACGAAGGGTAGTTACTTTTCTCTCTTGATTACAACATTTTAGCTTGGTTTTGGGTGTTTATT
TGTAGTGTTTTCTACTTCATTAGATCCATGTTGTAGCTATTATAGTTAATTTTGGAATGGATAA
AACCGGCTTTCTTTTGGGTAGGCAGACAGTTACTTGACCTGATAGAATGAATTTTGGAGTTCTT
TAATGTATATATTAGGTTGCGTTGGATTTTGTTTTCTTGAATTGTAAATAGCATTAACTAGATT
ATTTCCCATTTTTCTTTATGAGGAACCATCTAGAATAAGCTGTTAAAATTCACAGTGGATTCAT
ACACTTGTTATCCCAGCATTGAGGCTACGTGACTATATGCTCAGGAGTTGAGACCACCTTGGGC
AGCAGAGAGATCCTGTCTCATAAACAGGGATCAGAAATGGGTCTTACAAGAAGGAAGCTGTTCT
ACATATTTTTAATTATAGCTTAGTTTTCATATCTAAAGAACACTTAGCATAATTTCTGTGAGTT
AAATATTCATAAATGATCTGAGAGTTATAGGAAAGATGGTAACCGCTATGTACCGCACAGCTGT
TGGCCTCTACTAACCACGTGTGTGAGGAGATGCTCTGTTCATCACAGCGTTCCTCACACAGGGA
TTCCCTACCACCCGATGCCATTGCACTTCTCTCTACATGGGGTAGAAGTGACATGTTGGCTGCT
TTCTTACCAAAGAGAGAGACCTGAGACTAACAAGGATTGTGAGGGTAGTTTTTGTATTTTCGTT
TTCCTGGGAGTCAGCATGTGGGGGATTCTCACTGTGGTGAGCTAGAGGTTAAGGGACTAGTGAG
GCACAAAGCCATGATCCCAAAGGATCCTTTTATTTGGTTCACAGTATTTTTGGCTTTTTTTTTT
GCTAAATTTTGCAGAAATTTCTTTCTCTATGCTGACCTAATTTTCTTCATTGAGACCATTCCTA
TGAGAACTGTATTCTAGTTAAAGAGTGTTGGGAGAAATACTTGCTTCTGACCTCTGTGTTTTTC
CCATTCTTTAATATTCTTGAGTGCTTGAAAAATACCTTAAAAGAAATTCTGTTCATGATCAAAT
ATAGGTTTATTAGAAATACCCTATACACTTTTGCCTTGACGGTGGTATAAGTTCTGAGAAGTTG
CATGATCATGAAAATAGTTGATTATGGTTAAAAATAAATAGATAAACCTGTTGCCAGAATGAGT
TAACCTATTATGACCACAGCTGTGTGATTTCTTTAGCAGAGAAAGTCGTCTTCAAAAATCAACT
ACCGCTTTTCTAACACTGCATTTTCAAAATAAGCTAGTGTTTGTTGTTTTCTCTTCTGACTTGT
AGTGGGCAAGCCTACAAAGACTTGAATGCAGGTATTCGTGAAGACAGAATAAGTTTAAAGGGTC
TTGTGATGAAAAGCTCACATTTAACAAAATGTTTAGGGTTTTCACACTTTCACGTGCATGTTTT
GGAATAGATTTTAGGGAGTGTTTATCATCATTTTGGACTTTTTCCTGTTTTTGTTACCAACTTC
CTAAGATTTAGCTAATAGAAGAAGACAAATCCCAGGGAAGTGTAGTGGTAGAGTAAGGGGTGGG
AATGTGCTGCTGTTCAAAGTGAGCCTTGTTCCATTGTTCAAATGTCGATGCCTCCTGTATCCAG
TACCACCTCCTGCAGTTCTAATGTAAATGGTATGTGTATATGTATAGTTTTGTAGAGAAAACGT
CCTCGTTCACTTTCATATGTAATTGTGCTTAGAGTATCAGCGGTTTTTATCCTTTTTACTTCAG
GCTCTTGTATGTTGAGTCTCTGAAATAGCAGAGAAGACAGATTTGTAGAATGGCTCAGCCGAAG
TGCCCTGCAGTGGGACAGATGCCATGGAAGGCTAGTGGGCTGCCTTCTGGATGAGACTGGCACC
GTATCGTTCTCTACGGAAAGATCAGTTGCAAGCAAAGTGTGTAGAATTCACTTGTTTTTCTTTT
AACTTTTAATTACTTAAATAAAATCCATTGTTTCATAGTAAATGTAGACTGCGTATGGAATTTT
CTGTGTAGTTTTCTAACGGGAATTCTATGTGGCCATCTAGCTTTCAGCAGTTTCCTCCCATGCA
GACTGGTGATGGGAGGAGCTTTGTCTGTTCGCTGTAGCAACAGAGCCACTATGTTTTACGCACT
TAAACTCTCACCAGATAGTTTCATGATAGGTGATTCCCTACTAATTAGGAAATTTCACACCCTT
ATTTTCTTTGTTAAGGAAGTCTGTTCTGTTTATGTCACCGAGGAAAACAACAATGGCTATCTCA
CCACCAACCTATAAATATCAGCTCGTTATTATACCTGTTTTGTTTTTAAACATAACATGGCGTC
ATCACACTAAAACCTCCGGGTTCCTTTTTAAGGTTTTGTTTATTTTTAGTTGTGATAAAATGCT
CTTGACAGGATTTACCATCTGAAGCATTTTTGACTGTACCATTTGCTGGTGTTAGGTGTGCTCA
CATTGTTGTGTGACCAACCTCTATAACGCTTTCATTGCAAAACTGACACTGTACCTGAGTCCCC
TCTCCTCTGCCTGCCCTGTAGCCACGGTCTACTTTGTTGCTGTTTGGCTAATCTAGAAAGTGAA
ATATAAACATCATTTAATTAAAATTCTTTACCGTTTGTA

hide sequence

RefSeq Acc Id:

XM_017596120 ⟹ XP_017451609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,898,580 - 104,935,092 (-)	NCBI
mRatBN7.2	8	96,022,955 - 96,055,445 (-)	NCBI
Rnor_6.0	8	103,242,095 - 103,278,559 (-)	NCBI

Sequence:

show sequence

CCGCCTTCTATGATGGAACACACACTTCCCCCACCTCCATCCGGACTGCCTTTTAATGCGCAGC
CTAGAGAGCGATTAAAAAACCCCAATGCTCCCATGTTACCACCACCTAAAAACAAGGAGGATTT
TGAGAAGGAATTTACTCGCCCTGATACACCGAATGATAGAATTTGTTGTACGTGAAGGGCCAAT
GTTTGAAGCTATGATTATGAACAGAGAAATCAACAATCCTATGTTCAGGTTCTTATTTGAAAAC
CAGACACCAGCCCACGTTTACTACAGGTGGAAGCTTTATTCTATTCTGCAGGGAGATTCTCCGA
CAAAATGGCGGACAGAAGATTTTCGGATGTTCAAAAATGGATCCTTTTGGAGGCCACCACCATT
AAATCCATACCTTCATGGGATGTCAGAGGAGCAGGAGACAGAAGCGTTTGTAGAAGAGCCTAGT
AAAAAGGGAGCACTCAAGGAAGAACAGCGGGATAAATTAGAAGAAATCTTGCGAGGATTAACTC
CAAGGAAAAATGATATTGGAGATGCCATGGTTTTCTGTCTTAATAATGCTGAAGCTGCTGAAGA
AATAGTGGACTGCATTACTGAGTCACTGTCTATCTTAAAGACCCCGCTTCCCAAGAAGATTGCC
AGATTATATTTGGTTTCTGATGTTTTATATAACTCTTCAGCCAAAGTTGCCAATGCTTCATATT
ATAGGAAATTTTTTGAAACAAAGCTATGTCAGATATTTTCAGACCTCAATGCTACTTATCGTAC
AATTCAAGGCCATTTACAATCTGAAAATTTTAAGCAACGGGTAATGACCTGCTTCAGAGCATGG
GAAGATTGGGCAATTTATCCAGAACCATTTTTGATCAAACTTCAGAATATTTTCTTAGGACTTG
TAAATATCATTGAAGAAAAGGAAACAGAGGATGTGCCAGATGATCTTGACGGTGCTCCCATTGA
GGAAGAGCTTGATGGTGCTCCTCTGGAAGATGTGGATGGAATTCCCATTGATGCTACTCCCATC
GATGATCTTGATGGCGTCCCTATAAAAAGTCTCGATGATGATCTGGATGGAGTGCCTTTGGATG
CAGCTGAAGACTCAAAGAAGAATGAACCCATATTTAAAGTTGCCCCATCAAAGTGGGAGGCTGT
AGATGAATCTGAGTTGGAAGCACAAGCGGTGACAACTTCCAAGTGGGAGTTATTTGACCAGCAT
GAAGAATCAGAAGAAGAAGAAAACCAAAATCAGGAAGAAGAGAGTGAAGATGAAGAAGACACCC
AGAGTTCCAAGTCGGAAGAGCATCATTTATATTCTAACCCAGTCAGAGAAGAGATGACTGAGTC
TAAGTTCTCTAAGTACTCCGAAATGAGTGAGGAGAAACGAGCTAAGCTCCGTGAAATTGAGCTA
AAAGTTATGAAGTTTCAAGATGAATTGGAATCTGGAAAGAGACCAAAAAAACCCGGCCAAAGCT
TCCAGGAGCAAGTAGAACACTACAGAGATAAACTGCTGCAGCGAGAGAAGGAGAAAGAATTAGA
AAGAGAACGAGAAAGAGACAAAAAAGATAAAGAAAAATTGGAATCTCGATCCAAAGACAAGAAG
GAAAAGGATGAATGTACTCCAACGAGAAAAGAGAGGAAGAGACGACATAGCACCTCCCCCAGCC
CATCTCGAAGTAGCAGTGGTCGACGAGTGAAATCCCCATCACCCAAATCAGAGCGGTCCGAACG
GTCAGAAAGGTCTCATAAAGAAAGCTCTCGGTCCAGGTCCTCTCACAAAGACTCCCCTAGAGAT
GCTAGCAAAAAAGCCAAAAGGTCACCGTCTGGTTCAAGGACACCTAAAAGGTCTAGGCGGTCCC
GGTCTAGGTCCCCGAAGAAGTCAGGGAAGAAATCCAGATCTCAGTCCCGGTCTCCACACAGGTC
TCATAAAAAGTCAAAGAAAAACAAACACTGACATATATTTTTAAGATGCTGTCACTTATTGGAA
ATGCAAGTTTGTTTTGTGCCTGAATGGTTTTTTTTTTTGTTTTGTTTTTTTAATAAAAAAAAAA
AACCATACACACAAAAACAAGAAAAATTCTAATGAAAGAGCATTCCTGGGTTTGTTTGTTTGTT
TGTTTGTGAATGCATGTGTAAACTCATGAGTAACTGCACCTGTAGACCTGTCATTGTTTTATAT
TGTATAAATTACTTTTGTTGTGGCTGTTTTCTCAAGATGAAATTTTTATTGTGCTAATGAATTT
CATCAGAAATGTGTACAACGGATCTGCTGGCAGTAGTAGTATTTTGTTTTAGGATGTTGTGACT
TAGACACATAATACAGATGTCTTCCCCCCCTTTTGTAGCTTTGACAATTTGAATTAGATTTCAA
ATAAAATCTGAACAGAAAACTATAATGTTGTTTTTTTGCCCAGTTGGTGACACCAAGTCCCTTA
AAGACCTACTAAGTGAATTTGGCACCATTGCTGTTTCTTATCCCTAGTGCACTTTACAAACTCC
AGTGTTCAAGTAGCTAGTGTTTTATAGTTACTAAAGTGACTTCCAAAAGTTAAGGGACCCAGCA
CTCCTGTTTGGTAGGTTTTGCTTATCCATTTCTGGAAAAAGGGTTTCAAACCCAGAGATGAGAG
GGCTCGAGTGAGAGGGTACGGTGTGCATCTGTTACTGTAGTGCCTGGTTCAAACGCCCTTTCTC
AAAGAAGCAATGTGACTTCAAAACACTCAGTCCCATCTTCAGAGCAATTAATGTATTTAGGGTT
AATTTAATTTTTATCTTCTATCATGAAACAAGTTTATTTATAAAAGGTTTTATAAAAACAGTTT
ACCATAGAATTCTTTTGTATAATAGTTGCTTTTTTATAATTGTCTGTAGGTTATCTTTAAAACA
CTGGTATCATGATATTTGTACAAATTTGTTTGAAACAGCTTTTTGATTTGAAGGATTTGGTTTG
GAGTACAGCTTTAAATAAAAATTGAAAAAATTAAATGGTTTTCAGGTAATTTTAACACTCAATG
ATTTATAAATTTAAGTAAAAAGTTGACTTAAGTCAGAGTTGAATTCTAACAGGAAGAACTTGGC
AGTGGCCTGGGGAAGCAATAGGAAACCTTGTGAATGTCGATCCCAGCCCCGCAGAGAGTATAGT
GTAAAGGAGGTGTGGACTTGAGCCGGCCTCAGGGTCTGTCAGTTTTGCTTTCAGGTTTGCATCT
AGGTACTATGTGCAGTGTTTTGTGTTTTTTTCGGTAATAATGGATTGTTCGGATTTAACTTATT
CTTTTAAAATCGTTTCACCTTGTTTACTTAATCTTGCCCAATCACAAAATAAGGCGTCTTCTCC
CCGTGATTTGGGGAGTAGTCATATCAGCTGTACATAGAGTAAGGCATGTCTTTTCCTTCTCCAA
CACATCTACAGCAGCTTTCGAGATGAGCCAGTCACACTGCTTTACATCGTGGTTCTTAGCATGA
AAATATTCAGTCCTTTGTTTACCTCCTCTATTAGGAAATGCTAATTCCTTAAAGTTGCTCAGAA
TAATTAATGTGAACATTTGGTGCTGATCCTTAAAGATCTATATAAATACAGCCATTACAAGCAG
AACACATTTTCCTCCTGTGTTCATTGTCTGGGAGAATGGCATTTTATATCTTTCTTTTAAGAAA
AATAGTGTCCAATTGCCGTTAGTTGTGGTTTCCTCATTCCCTGAGTTTTTAGGTAGACAAAGAA
ATAATTGGTCAGAAAGTGGTTTTCTTTTTTTCAGGCAAGTTACGAAGGGTAGTTACTTTTCTCT
CTTGATTACAACATTTTAGCTTGGTTTTGGGTGTTTATTTGTAGTGTTTTCTACTTCATTAGAT
CCATGTTGTAGCTATTATAGTTAATTTTGGAATGGATAAAACCGGCTTTCTTTTGGGTAGGCAG
ACAGTTACTTGACCTGATAGAATGAATTTTGGAGTTCTTTAATGTATATATTAGGTTGCGTTGG
ATTTTGTTTTCTTGAATTGTAAATAGCATTAACTAGATTATTTCCCATTTTTCTTTATGAGGAA
CCATCTAGAATAAGCTGTTAAAATTCACAGTGGATTCATACACTTGTTATCCCAGCATTGAGGC
TACGTGACTATATGCTCAGGAGTTGAGACCACCTTGGGCAGCAGAGAGATCCTGTCTCATAAAC
AGGGATCAGAAATGGGTCTTACAAGAAGGAAGCTGTTCTACATATTTTTAATTATAGCTTAGTT
TTCATATCTAAAGAACACTTAGCATAATTTCTGTGAGTTAAATATTCATAAATGATCTGAGAGT
TATAGGAAAGATGGTAACCGCTATGTACCGCACAGCTGTTGGCCTCTACTAACCACGTGTGTGA
GGAGATGCTCTGTTCATCACAGCGTTCCTCACACAGGGATTCCCTACCACCCGATGCCATTGCA
CTTCTCTCTACATGGGGTAGAAGTGACATGTTGGCTGCTTTCTTACCAAAGAGAGAGACCTGAG
ACTAACAAGGATTGTGAGGGTAGTTTTTGTATTTTCGTTTTCCTGGGAGTCAGCATGTGGGGGA
TTCTCACTGTGGTGAGCTAGAGGTTAAGGGACTAGTGAGGCACAAAGCCATGATCCCAAAGGAT
CCTTTTATTTGGTTCACAGTATTTTTGGCTTTTTTTTTTGCTAAATTTTGCAGAAATTTCTTTC
TCTATGCTGACCTAATTTTCTTCATTGAGACCATTCCTATGAGAACTGTATTCTAGTTAAAGAG
TGTTGGGAGAAATACTTGCTTCTGACCTCTGTGTTTTTCCCATTCTTTAATATTCTTGAGTGCT
TGAAAAATACCTTAAAAGAAATTCTGTTCATGATCAAATATAGGTTTATTAGAAATACCCTATA
CACTTTTGCCTTGACGGTGGTATAAGTTCTGAGAAGTTGCATGATCATGAAAATAGTTGATTAT
GGTTAAAAATAAATAGATAAACCTGTTGCCAGAATGAGTTAACCTATTATGACCACAGCTGTGT
GATTTCTTTAGCAGAGAAAGTCGTCTTCAAAAATCAACTACCGCTTTTCTAACACTGCATTTTC
AAAATAAGCTAGTGTTTGTTGTTTTCTCTTCTGACTTGTAGTGGGCAAGCCTACAAAGACTTGA
ATGCAGGTATTCGTGAAGACAGAATAAGTTTAAAGGGTCTTGTGATGAAAAGCTCACATTTAAC
AAAATGTTTAGGGTTTTCACACTTTCACGTGCATGTTTTGGAATAGATTTTAGGGAGTGTTTAT
CATCATTTTGGACTTTTTCCTGTTTTTGTTACCAACTTCCTAAGATTTAGCTAATAGAAGAAGA
CAAATCCCAGGGAAGTGTAGTGGTAGAGTAAGGGGTGGGAATGTGCTGCTGTTCAAAGTGAGCC
TTGTTCCATTGTTCAAATGTCGATGCCTCCTGTATCCAGTACCACCTCCTGCAGTTCTAATGTA
AATGGTATGTGTATATGTATAGTTTTGTAGAGAAAACGTCCTCGTTCACTTTCATATGTAATTG
TGCTTAGAGTATCAGCGGTTTTTATCCTTTTTACTTCAGGCTCTTGTATGTTGAGTCTCTGAAA
TAGCAGAGAAGACAGATTTGTAGAATGGCTCAGCCGAAGTGCCCTGCAGTGGGACAGATGCCAT
GGAAGGCTAGTGGGCTGCCTTCTGGATGAGACTGGCACCGTATCGTTCTCTACGGAAAGATCAG
TTGCAAGCAAAGTGTGTAGAATTCACTTGTTTTTCTTTTAACTTTTAATTACTTAAATAAAATC
CATTGTTTCATAGTAAATGTAGACTGCGTATGGAATTTTCTGTGTAGTTTTCTAACGGGAATTC
TATGTGGCCATCTAGCTTTCAGCAGTTTCCTCCCATGCAGACTGGTGATGGGAGGAGCTTTGTC
TGTTCGCTGTAGCAACAGAGCCACTATGTTTTACGCACTTAAACTCTCACCAGATAGTTTCATG
ATAGGTGATTCCCTACTAATTAGGAAATTTCACACCCTTATTTTCTTTGTTAAGGAAGTCTGTT
CTGTTTATGTCACCGAGGAAAACAACAATGGCTATCTCACCACCAACCTATAAATATCAGCTCG
TTATTATACCTGTTTTGTTTTTAAACATAACATGGCGTCATCACACTAAAACCTCCGGGTTCCT
TTTTAAGGTTTTGTTTATTTTTAGTTGTGATAAAATGCTCTTGACAGGATTTACCATCTGAAGC
ATTTTTGACTGTACCATTTGCTGGTGTTAGGTGTGCTCACATTGTTGTGTGACCAACCTCTATA
ACGCTTTCATTGCAAAACTGACACTGTACCTGAGTCCCCTCTCCTCTGCCTGCCCTGTAGCCAC
GGTCTACTTTGTTGCTGTTTGGCTAATCTAGAAAGTGAAATATAAACATCATTTAATTAAAATT
CTTTACCGTTTGTA

hide sequence

RefSeq Acc Id:

XM_039082559 ⟹ XP_038938487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,898,580 - 104,955,437 (-)	NCBI
mRatBN7.2	8	96,022,955 - 96,075,788 (-)	NCBI

RefSeq Acc Id:

XM_039082560 ⟹ XP_038938488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,898,580 - 104,963,642 (-)	NCBI
mRatBN7.2	8	96,018,932 - 96,075,795 (-)	NCBI

RefSeq Acc Id:

XM_236501 ⟹ XP_236501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,898,580 - 104,955,434 (-)	NCBI
mRatBN7.2	8	96,018,932 - 96,075,787 (-)	NCBI
Rnor_6.0	8	103,242,095 - 103,299,082 (-)	NCBI
Rnor_5.0	8	102,700,388 - 102,757,363 (-)	NCBI
RGSC_v3.4	8	100,558,095 - 100,611,422 (-)	RGD

Sequence:

show sequence

CGCGGAAGTCACGCGGCCCGGCGCCTCTGAGTTCTCTATTTCGGCATTCGGCTACTGGGCCTGG
CAGGCTTCTGGCGCGCTCCGCTGATATCTGTTCTTTCGGTGCTCGACTCACCCGCGCTGCTGCC
TCCGCTGAAGGAGGAGCAAAGCTCAAGATGGCCGACAAAACGCCAGGCGGATCTCAGAAGGCCA
GTTCAAAGAGCCGATCATCGGATGTTCATTCATCTGGATCTTCAGATGCTCATATGGACGCATC
TGGACCCTCAGATAGCGATATGCCAAGTCGAACACGACCTAAAAGCCCAAGAAAACACAATTAT
AGGAATGAAAGTGGCCGTGAAAGCCTTTGCGATTCTCCTCATCAGAATCTCTCAAGACCTCTTC
TAGAAAACAAGCTTAAAGCATTCAGTATTGGAAAAATGAGCACAGCAAAGCGAACTCTAAGTAA
GAAGGAACAAGAGGAACTGAAGAAAAAGGAGGATGAAAAGGCAGCTGCTGAAATTTATGAGGAA
TTTCTTGCTGCTTTTGAAGGAAGTGATGGTAATAAGGTGAAAACGTTTGTTCGAGGCGGGGTTG
TTAATGCAGCTAAAGATGAACATGAAACAGATGAAAAAAGAGGTAAAATCTATAAGCCATCTTC
AAGGTTTGCAGATCAAAAGAATCCTCCAAATCAGTCATCCAATGAAAGGCCACCATCTCTTCTT
GTGATAGAGACGAAAAAGCCTCCACTGAAGAAAGGGGAGAAGGAAAAGAAAAAAAGCAATTTGG
AACTTTTCAAAGAAGAACTAAAACAAATTCAGGAAGAACGTGATGAGAGACATAAAACAAAAGG
CAGGTTAAGTCGGTTTGAGCCTCCTCAGTCAGACTCTGATGGTCAGCGACGTTCCATGGATGTG
CCTTCAAGAAGAAATAGATCGTCTGGTGTTCTTGATGATTATGCACCGGGCTCACATGATGTAG
GAGATCCCAGCACTACAAACTTATACCTCGGAAACATTAATCCACAGATGAATGAAGAAATGCT
GTGCCAAGAATTTGGAAGATTTGGACCATTAGCTAGTGTAAAAATTATGTGGCCTAGAACTGAT
GAAGAAAGAGCACGAGAAAGAAATTGTGGCTTTGTGGCTTTTATGAATAGAAGAGATGCTGAGA
GAGCTCTAAAAAATTTAAATGGAAAAATGATTATGTCTTTTGAAATGAAGTTAGGTTGGGGTAA
AGCTGTACCTATTCCTCCACACCCAATATACATTCCGCCTTCTATGATGGAACACACACTTCCC
CCACCTCCATCCGGACTGCCTTTTAATGCGCAGCCTAGAGAGCGATTAAAAAACCCCAATGCTC
CCATGTTACCACCACCTAAAAACAAGGAGGATTTTGAGAAGACTCTGTCGCAAGCCATAGTCAA
AGTGGTTATCCCAACAGAAAGGAATTTACTCGCCCTGATACACCGAATGATAGAATTTGTTGTA
CGTGAAGGGCCAATGTTTGAAGCTATGATTATGAACAGAGAAATCAACAATCCTATGTTCAGGT
TCTTATTTGAAAACCAGACACCAGCCCACGTTTACTACAGGTGGAAGCTTTATTCTATTCTGCA
GGGAGATTCTCCGACAAAATGGCGGACAGAAGATTTTCGGATGTTCAAAAATGGATCCTTTTGG
AGGCCACCACCATTAAATCCATACCTTCATGGGATGTCAGAGGAGCAGGAGACAGAAGCGTTTG
TAGAAGAGCCTAGTAAAAAGGGAGCACTCAAGGAAGAACAGCGGGATAAATTAGAAGAAATCTT
GCGAGGATTAACTCCAAGGAAAAATGATATTGGAGATGCCATGGTTTTCTGTCTTAATAATGCT
GAAGCTGCTGAAGAAATAGTGGACTGCATTACTGAGTCACTGTCTATCTTAAAGACCCCGCTTC
CCAAGAAGATTGCCAGATTATATTTGGTTTCTGATGTTTTATATAACTCTTCAGCCAAAGTTGC
CAATGCTTCATATTATAGGAAATTTTTTGAAACAAAGCTATGTCAGATATTTTCAGACCTCAAT
GCTACTTATCGTACAATTCAAGGCCATTTACAATCTGAAAATTTTAAGCAACGGGTAATGACCT
GCTTCAGAGCATGGGAAGATTGGGCAATTTATCCAGAACCATTTTTGATCAAACTTCAGAATAT
TTTCTTAGGACTTGTAAATATCATTGAAGAAAAGGAAACAGAGGATGTGCCAGATGATCTTGAC
GGTGCTCCCATTGAGGAAGAGCTTGATGGTGCTCCTCTGGAAGATGTGGATGGAATTCCCATTG
ATGCTACTCCCATCGATGATCTTGATGGCGTCCCTATAAAAAGTCTCGATGATGATCTGGATGG
AGTGCCTTTGGATGCAGCTGAAGACTCAAAGAAGAATGAACCCATATTTAAAGTTGCCCCATCA
AAGTGGGAGGCTGTAGATGAATCTGAGTTGGAAGCACAAGCGGTGACAACTTCCAAGTGGGAGT
TATTTGACCAGCATGAAGAATCAGAAGAAGAAGAAAACCAAAATCAGGAAGAAGAGAGTGAAGA
TGAAGAAGACACCCAGAGTTCCAAGTCGGAAGAGCATCATTTATATTCTAACCCAGTCAGAGAA
GAGATGACTGAGTCTAAGTTCTCTAAGTACTCCGAAATGAGTGAGGAGAAACGAGCTAAGCTCC
GTGAAATTGAGCTAAAAGTTATGAAGTTTCAAGATGAATTGGAATCTGGAAAGAGACCAAAAAA
ACCCGGCCAAAGCTTCCAGGAGCAAGTAGAACACTACAGAGATAAACTGCTGCAGCGAGAGAAG
GAGAAAGAATTAGAAAGAGAACGAGAAAGAGACAAAAAAGATAAAGAAAAATTGGAATCTCGAT
CCAAAGACAAGAAGGAAAAGGATGAATGTACTCCAACGAGAAAAGAGAGGAAGAGACGACATAG
CACCTCCCCCAGCCCATCTCGAAGTAGCAGTGGTCGACGAGTGAAATCCCCATCACCCAAATCA
GAGCGGTCCGAACGGTCAGAAAGGTCTCATAAAGAAAGCTCTCGGTCCAGGTCCTCTCACAAAG
ACTCCCCTAGAGATGCTAGCAAAAAAGCCAAAAGGTCACCGTCTGGTTCAAGGACACCTAAAAG
GTCTAGGCGGTCCCGGTCTAGGTCCCCGAAGAAGTCAGGGAAGAAATCCAGATCTCAGTCCCGG
TCTCCACACAGGTCTCATAAAAAGTCAAAGAAAAACAAACACTGACATATATTTTTAAGATGCT
GTCACTTATTGGAAATGCAAGTTTGTTTTGTGCCTGAATGGTTTTTTTTTTTGTTTTGTTTTTT
TAATAAAAAAAAAAAACCATACACACAAAAACAAGAAAAATTCTAATGAAAGAGCATTCCTGGG
TTTGTTTGTTTGTTTGTTTGTGAATGCATGTGTAAACTCATGAGTAACTGCACCTGTAGACCTG
TCATTGTTTTATATTGTATAAATTACTTTTGTTGTGGCTGTTTTCTCAAGATGAAATTTTTATT
GTGCTAATGAATTTCATCAGAAATGTGTACAACGGATCTGCTGGCAGTAGTAGTATTTTGTTTT
AGGATGTTGTGACTTAGACACATAATACAGATGTCTTCCCCCCCTTTTGTAGCTTTGACAATTT
GAATTAGATTTCAAATAAAATCTGAACAGAAAACTATAATGTTGTTTTTTTGCCCAGTTGGTGA
CACCAAGTCCCTTAAAGACCTACTAAGTGAATTTGGCACCATTGCTGTTTCTTATCCCTAGTGC
ACTTTACAAACTCCAGTGTTCAAGTAGCTAGTGTTTTATAGTTACTAAAGTGACTTCCAAAAGT
TAAGGGACCCAGCACTCCTGTTTGGTAGGTTTTGCTTATCCATTTCTGGAAAAAGGGTTTCAAA
CCCAGAGATGAGAGGGCTCGAGTGAGAGGGTACGGTGTGCATCTGTTACTGTAGTGCCTGGTTC
AAACGCCCTTTCTCAAAGAAGCAATGTGACTTCAAAACACTCAGTCCCATCTTCAGAGCAATTA
ATGTATTTAGGGTTAATTTAATTTTTATCTTCTATCATGAAACAAGTTTATTTATAAAAGGTTT
TATAAAAACAGTTTACCATAGAATTCTTTTGTATAATAGTTGCTTTTTTATAATTGTCTGTAGG
TTATCTTTAAAACACTGGTATCATGATATTTGTACAAATTTGTTTGAAACAGCTTTTTGATTTG
AAGGATTTGGTTTGGAGTACAGCTTTAAATAAAAATTGAAAAAATTAAATGGTTTTCAGGTAAT
TTTAACACTCAATGATTTATAAATTTAAGTAAAAAGTTGACTTAAGTCAGAGTTGAATTCTAAC
AGGAAGAACTTGGCAGTGGCCTGGGGAAGCAATAGGAAACCTTGTGAATGTCGATCCCAGCCCC
GCAGAGAGTATAGTGTAAAGGAGGTGTGGACTTGAGCCGGCCTCAGGGTCTGTCAGTTTTGCTT
TCAGGTTTGCATCTAGGTACTATGTGCAGTGTTTTGTGTTTTTTTCGGTAATAATGGATTGTTC
GGATTTAACTTATTCTTTTAAAATCGTTTCACCTTGTTTACTTAATCTTGCCCAATCACAAAAT
AAGGCGTCTTCTCCCCGTGATTTGGGGAGTAGTCATATCAGCTGTACATAGAGTAAGGCATGTC
TTTTCCTTCTCCAACACATCTACAGCAGCTTTCGAGATGAGCCAGTCACACTGCTTTACATCGT
GGTTCTTAGCATGAAAATATTCAGTCCTTTGTTTACCTCCTCTATTAGGAAATGCTAATTCCTT
AAAGTTGCTCAGAATAATTAATGTGAACATTTGGTGCTGATCCTTAAAGATCTATATAAATACA
GCCATTACAAGCAGAACACATTTTCCTCCTGTGTTCATTGTCTGGGAGAATGGCATTTTATATC
TTTCTTTTAAGAAAAATAGTGTCCAATTGCCGTTAGTTGTGGTTTCCTCATTCCCTGAGTTTTT
AGGTAGACAAAGAAATAATTGGTCAGAAAGTGGTTTTCTTTTTTTCAGGCAAGTTACGAAGGGT
AGTTACTTTTCTCTCTTGATTACAACATTTTAGCTTGGTTTTGGGTGTTTATTTGTAGTGTTTT
CTACTTCATTAGATCCATGTTGTAGCTATTATAGTTAATTTTGGAATGGATAAAACCGGCTTTC
TTTTGGGTAGGCAGACAGTTACTTGACCTGATAGAATGAATTTTGGAGTTCTTTAATGTATATA
TTAGGTTGCGTTGGATTTTGTTTTCTTGAATTGTAAATAGCATTAACTAGATTATTTCCCATTT
TTCTTTATGAGGAACCATCTAGAATAAGCTGTTAAAATTCACAGTGGATTCATACACTTGTTAT
CCCAGCATTGAGGCTACGTGACTATATGCTCAGGAGTTGAGACCACCTTGGGCAGCAGAGAGAT
CCTGTCTCATAAACAGGGATCAGAAATGGGTCTTACAAGAAGGAAGCTGTTCTACATATTTTTA
ATTATAGCTTAGTTTTCATATCTAAAGAACACTTAGCATAATTTCTGTGAGTTAAATATTCATA
AATGATCTGAGAGTTATAGGAAAGATGGTAACCGCTATGTACCGCACAGCTGTTGGCCTCTACT
AACCACGTGTGTGAGGAGATGCTCTGTTCATCACAGCGTTCCTCACACAGGGATTCCCTACCAC
CCGATGCCATTGCACTTCTCTCTACATGGGGTAGAAGTGACATGTTGGCTGCTTTCTTACCAAA
GAGAGAGACCTGAGACTAACAAGGATTGTGAGGGTAGTTTTTGTATTTTCGTTTTCCTGGGAGT
CAGCATGTGGGGGATTCTCACTGTGGTGAGCTAGAGGTTAAGGGACTAGTGAGGCACAAAGCCA
TGATCCCAAAGGATCCTTTTATTTGGTTCACAGTATTTTTGGCTTTTTTTTTTGCTAAATTTTG
CAGAAATTTCTTTCTCTATGCTGACCTAATTTTCTTCATTGAGACCATTCCTATGAGAACTGTA
TTCTAGTTAAAGAGTGTTGGGAGAAATACTTGCTTCTGACCTCTGTGTTTTTCCCATTCTTTAA
TATTCTTGAGTGCTTGAAAAATACCTTAAAAGAAATTCTGTTCATGATCAAATATAGGTTTATT
AGAAATACCCTATACACTTTTGCCTTGACGGTGGTATAAGTTCTGAGAAGTTGCATGATCATGA
AAATAGTTGATTATGGTTAAAAATAAATAGATAAACCTGTTGCCAGAATGAGTTAACCTATTAT
GACCACAGCTGTGTGATTTCTTTAGCAGAGAAAGTCGTCTTCAAAAATCAACTACCGCTTTTCT
AACACTGCATTTTCAAAATAAGCTAGTGTTTGTTGTTTTCTCTTCTGACTTGTAGTGGGCAAGC
CTACAAAGACTTGAATGCAGGTATTCGTGAAGACAGAATAAGTTTAAAGGGTCTTGTGATGAAA
AGCTCACATTTAACAAAATGTTTAGGGTTTTCACACTTTCACGTGCATGTTTTGGAATAGATTT
TAGGGAGTGTTTATCATCATTTTGGACTTTTTCCTGTTTTTGTTACCAACTTCCTAAGATTTAG
CTAATAGAAGAAGACAAATCCCAGGGAAGTGTAGTGGTAGAGTAAGGGGTGGGAATGTGCTGCT
GTTCAAAGTGAGCCTTGTTCCATTGTTCAAATGTCGATGCCTCCTGTATCCAGTACCACCTCCT
GCAGTTCTAATGTAAATGGTATGTGTATATGTATAGTTTTGTAGAGAAAACGTCCTCGTTCACT
TTCATATGTAATTGTGCTTAGAGTATCAGCGGTTTTTATCCTTTTTACTTCAGGCTCTTGTATG
TTGAGTCTCTGAAATAGCAGAGAAGACAGATTTGTAGAATGGCTCAGCCGAAGTGCCCTGCAGT
GGGACAGATGCCATGGAAGGCTAGTGGGCTGCCTTCTGGATGAGACTGGCACCGTATCGTTCTC
TACGGAAAGATCAGTTGCAAGCAAAGTGTGTAGAATTCACTTGTTTTTCTTTTAACTTTTAATT
ACTTAAATAAAATCCATTGTTTCATAGTAAATGTAGACTGCGTATGGAATTTTCTGTGTAGTTT
TCTAACGGGAATTCTATGTGGCCATCTAGCTTTCAGCAGTTTCCTCCCATGCAGACTGGTGATG
GGAGGAGCTTTGTCTGTTCGCTGTAGCAACAGAGCCACTATGTTTTACGCACTTAAACTCTCAC
CAGATAGTTTCATGATAGGTGATTCCCTACTAATTAGGAAATTTCACACCCTTATTTTCTTTGT
TAAGGAAGTCTGTTCTGTTTATGTCACCGAGGAAAACAACAATGGCTATCTCACCACCAACCTA
TAAATATCAGCTCGTTATTATACCTGTTTTGTTTTTAAACATAACATGGCGTCATCACACTAAA
ACCTCCGGGTTCCTTTTTAAGGTTTTGTTTATTTTTAGTTGTGATAAAATGCTCTTGACAGGAT
TTACCATCTGAAGCATTTTTGACTGTACCATTTGCTGGTGTTAGGTGTGCTCACATTGTTGTGT
GACCAACCTCTATAACGCTTTCATTGCAAAACTGACACTGTACCTGAGTCCCCTCTCCTCTGCC
TGCCCTGTAGCCACGGTCTACTTTGTTGCTGTTTGGCTAATCTAGAAAGTGAAATATAAACATC
ATTTAATTAAAATTCTTTACCGTTTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001417469	(Get FASTA)	NCBI Sequence Viewer
	NP_001417470	(Get FASTA)	NCBI Sequence Viewer
	NP_001417471	(Get FASTA)	NCBI Sequence Viewer
	NP_001417472	(Get FASTA)	NCBI Sequence Viewer
	XP_002730000	(Get FASTA)	NCBI Sequence Viewer
	XP_006243616	(Get FASTA)	NCBI Sequence Viewer
	XP_017451609	(Get FASTA)	NCBI Sequence Viewer
	XP_038938487	(Get FASTA)	NCBI Sequence Viewer
	XP_038938488	(Get FASTA)	NCBI Sequence Viewer
	XP_236501	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011609
	ENSRNOP00000011609.6
	ENSRNOP00000048365.4
	ENSRNOP00000083935
	ENSRNOP00000083935.1
	ENSRNOP00000106231.1

RefSeq Acc Id:

XP_002730000 ⟸ XM_002729954

- Peptide Label:

isoform X3

- Sequence:

show sequence

MADKTPGGSQKASSKSRSSDVHSSGSSDAHPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKE
DEKAAAEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKDEHETDEKRGKIYKPSSRFADQKNPPN
QSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQS
DSDGQRRSMDVPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPL
ASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIY
IPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLL
ALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTE
DFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDI
GDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFE
TKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEE
KETEDVPDDLDGAPIEEELDGAPLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDAAEDSK
KNEPIFKVAPSKWEAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSE
EHHLYSNPVREEMTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVE
HYRDKLLQREKEKELERERERDKKDKEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSSS
GRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDASKKAKRSPSGSRTPKRSRRSRSRSPK
KSGKKSRSQSRSPHRSHKKSKKNKH

hide sequence

RefSeq Acc Id:

XP_236501 ⟸ XM_236501

- Peptide Label:

isoform X1

- Sequence:

show sequence

MADKTPGGSQKASSKSRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNESGRESL
CDSPHQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSD
GNKVKTFVRGGVVNAAKDEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLVIETKKPPL
KKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDVPSRRNRSSG
VLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNC
GFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFN
AQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAM
IMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYL
HGMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDC
ITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGH
LQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELD
GAPLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDAAEDSKKNEPIFKVAPSKWEAVDESE
LEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREEMTESKFSK
YSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERE
RDKKDKEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERS
HKESSRSRSSHKDSPRDASKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKS
KKNKH

hide sequence

RefSeq Acc Id:

XP_006243616 ⟸ XM_006243554

- Peptide Label:

isoform X2

- Sequence:

show sequence

MADKTPGGSQKASSKSRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNESGRESL
CDSPHQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSD
GNKVKTFVRGGVVNAAKDEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLVIETKKPPL
KKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDVPSRRNRSSV
LDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCG
FVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNA
QPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMI
MNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLH
GMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCI
TESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHL
QSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDG
APLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDAAEDSKKNEPIFKVAPSKWEAVDESEL
EAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREEMTESKFSKY
SEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERER
DKKDKEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSH
KESSRSRSSHKDSPRDASKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSK
KNKH

hide sequence

RefSeq Acc Id:

XP_017451609 ⟸ XM_017596120

- Peptide Label:

isoform X6

- Sequence:

show sequence

MLPCYHHLKTRRILRRNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYY
RWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEE
QRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDV
LYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPE
PFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPIDATPIDDLDGVPI
KSLDDDLDGVPLDAAEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWELFDQHEESEEEEN
QNQEEESEDEEDTQSSKSEEHHLYSNPVREEMTESKFSKYSEMSEEKRAKLREIELKVMKFQDE
LESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSKDKKEKDECTPT
RKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDASKKAKRS
PSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSKKNKH

hide sequence

Ensembl Acc Id:

ENSRNOP00000011609 ⟸ ENSRNOT00000011609

Ensembl Acc Id:

ENSRNOP00000048365 ⟸ ENSRNOT00000046873

RefSeq Acc Id:	XP_038938488 ⟸ XM_039082560
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZXP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938487 ⟸ XM_039082559
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000083935 ⟸ ENSRNOT00000116411

Ensembl Acc Id:

ENSRNOP00000106231 ⟸ ENSRNOT00000164576

Protein Domains

CID RRM SURP motif

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZAI0-F1-model_v2	AlphaFold	D3ZAI0	1-1029	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696191

Promoter ID:

EPDNEW_R6710

Type:

initiation region

Name:

U2surp_1

Description:

U2 snRNP-associated SURP domain containing

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	103,298,951 - 103,299,011	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307882	AgrOrtholog
BioCyc Gene	G2FUF-29485	BioCyc
Ensembl Genes	ENSRNOG00000008607	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011609	ENTREZGENE
	ENSRNOT00000011609.9	UniProtKB/TrEMBL
	ENSRNOT00000046873.7	UniProtKB/TrEMBL
	ENSRNOT00000116411	ENTREZGENE
	ENSRNOT00000116411.2	UniProtKB/TrEMBL
	ENSRNOT00000164576.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.790	UniProtKB/TrEMBL
	1.25.40.90	UniProtKB/TrEMBL
	3.30.70.330	UniProtKB/TrEMBL
	6.10.140.420	UniProtKB/TrEMBL
InterPro	ENTH_VHS	UniProtKB/TrEMBL
	mRNA_splic_Cwf21	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RNA_polymerase_II_lsu_CTD	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	SR-CTD_assoc_factor	UniProtKB/TrEMBL
	SR140_cwf21	UniProtKB/TrEMBL
	SR140_RRM	UniProtKB/TrEMBL
	Surp	UniProtKB/TrEMBL
	SWAP/Surp_sf	UniProtKB/TrEMBL
KEGG Report	rno:315903	UniProtKB/TrEMBL
NCBI Gene	315903	ENTREZGENE
PANTHER	RNA PROCESSING PROTEIN LD23810P	UniProtKB/TrEMBL
	U2 SNRNP-ASSOCIATED SURP MOTIF-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	CID	UniProtKB/TrEMBL
	cwf21	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
	Surp	UniProtKB/TrEMBL
PhenoGen	U2surp	PhenoGen
PROSITE	CID	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
	SURP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008607	RatGTEx
SMART	cwf21	UniProtKB/TrEMBL
	RPR	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
	SWAP	UniProtKB/TrEMBL
Superfamily-SCOP	ENTH_VHS	UniProtKB/TrEMBL
	SSF109905	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I5ZXP5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LWC6_RAT	UniProtKB/TrEMBL
	A6I255	ENTREZGENE, UniProtKB/TrEMBL
	D3ZAI0_RAT	UniProtKB/TrEMBL
	D4A4B4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-02-24	U2surp	U2 snRNP-associated SURP domain containing	RGD1307882	similar to CG9346-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1307882	similar to CG9346-PA	RGD1307882_predicted	similar to CG9346-PA (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307882_predicted	similar to CG9346-PA (predicted)	LOC315903_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315903_predicted	similar to CG9346-PA (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)