Advanced Search (OLGA)

Gene: Trak1 (trafficking kinesin protein 1) Rattus norvegicus

Analyze

Symbol:

Trak1

Name:

trafficking kinesin protein 1

RGD ID:

1307844

Description:

Enables TPR domain binding activity. Involved in axonal transport of mitochondrion; dendrite morphogenesis; and positive regulation of axonogenesis. Located in axonal growth cone; dendrite; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 68. Orthologous to human TRAK1 (trafficking kinesin protein 1); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC316085; LOC316085; OIP106; RGD1307844; similar to 106 kDa O-GlcNAc transferase-interacting protein; trafficking kinesin-binding protein 1; trafficking protein, kinesin binding 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRAK1 (trafficking kinesin protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Trak1 (trafficking protein, kinesin binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Trak1 (trafficking kinesin protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRAK1 (trafficking kinesin protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRAK1 (trafficking kinesin protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC110599009 (trafficking kinesin-binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRAK1 (trafficking kinesin protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRAK1 (trafficking kinesin protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Trak1 (trafficking kinesin protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Trak1 (trafficking kinesin protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Trak1 (trafficking protein, kinesin binding 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TRAK1 (trafficking kinesin protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	trak1b (trafficking protein, kinesin binding 1b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	trak-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	milt	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	trak1a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	trak1a	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	trak1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	trak1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC116411669	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	129,861,967 - 130,016,870 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	129,861,977 - 130,016,870 (+)	Ensembl				GRCr8
mRatBN7.2	8	120,984,445 - 121,139,357 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	120,984,431 - 121,139,367 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	126,645,443 - 126,737,251 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	124,844,508 - 124,936,314 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	122,674,305 - 122,766,030 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	129,946,596 - 130,106,382 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	130,009,573 - 130,106,382 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	129,143,133 - 129,298,643 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	126,372,084 - 126,478,493 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	120,183,796 - 120,274,421 (+)	NCBI		Celera
RGSC_v3.1	8	126,391,732 - 126,498,230 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 68 (ISO)

genetic disease (ISO)

schizophrenia (ISO)

Stiff-Person syndrome (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

geraniol (ISO)

hydrogen cyanide (ISO)

inulin (ISO)

isoniazide (ISO)

isoprenaline (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

N,N-diethyl-m-toluamide (EXP)

nefazodone (EXP)

nitrates (ISO)

nitrofen (EXP)

Nutlin-3 (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

pirinixic acid (ISO)

potassium cyanide (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

topotecan (EXP)

troglitazone (ISO)

trovafloxacin (EXP)

tungsten (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonal transport of mitochondrion (IMP)

dendrite morphogenesis (IMP)

endosome to lysosome transport (IBA,IEA,ISO)

mitochondrion distribution (IBA)

neurogenesis (IBA)

positive regulation of axonogenesis (IMP)

protein targeting (IBA)

vesicle transport along microtubule (IBA)

Cellular Component

axon cytoplasm (IEA)

axonal growth cone (IDA)

cytoplasm (IEA,ISO)

cytoplasmic vesicle (IBA)

dendrite (IBA,IDA)

early endosome (IEA,ISO)

mitochondrion (IBA,IEA,ISO)

perinuclear region of cytoplasm (IDA)

Molecular Function

GABA receptor binding (IBA,ISO)

myosin binding (IBA)

protein binding (ISO)

TPR domain binding (IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondria transport pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Identification and cloning of a novel family of coiled-coil domain proteins that interact with O-GlcNAc transferase.	Iyer SP, etal., J Biol Chem 2003 Feb 14;278(7):5399-409.
3.	Regulation of mitochondrial transport in neurons.	Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
4.	Localization of the kinesin adaptor proteins trafficking kinesin proteins 1 and 2 in primary cultures of hippocampal pyramidal and cortical neurons.	Loss O and Stephenson FA, J Neurosci Res. 2015 Jul;93(7):1056-66. doi: 10.1002/jnr.23549. Epub 2015 Feb 4.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	TRAK/Milton motor-adaptor proteins steer mitochondrial trafficking to axons and dendrites.	van Spronsen M, etal., Neuron. 2013 Feb 6;77(3):485-502. doi: 10.1016/j.neuron.2012.11.027.

Additional References at PubMed

PMID:15644324	PMID:16380713	PMID:18675823	PMID:19528298	PMID:33119838

Genomics

Comparative Map Data

Trak1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	129,861,967 - 130,016,870 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	129,861,977 - 130,016,870 (+)	Ensembl				GRCr8
mRatBN7.2	8	120,984,445 - 121,139,357 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	120,984,431 - 121,139,367 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	126,645,443 - 126,737,251 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	124,844,508 - 124,936,314 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	122,674,305 - 122,766,030 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	129,946,596 - 130,106,382 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	130,009,573 - 130,106,382 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	129,143,133 - 129,298,643 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	126,372,084 - 126,478,493 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	120,183,796 - 120,274,421 (+)	NCBI		Celera
RGSC_v3.1	8	126,391,732 - 126,498,230 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

TRAK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	42,013,093 - 42,225,890 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	42,013,624 - 42,225,890 (+)	Ensembl			hg38	GRCh38
GRCh37	3	42,128,692 - 42,267,382 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	42,107,750 - 42,242,272 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	42,072,033 - 42,206,607 (+)	NCBI		Celera
Cytogenetic Map	3	p22.1	NCBI
HuRef	3	42,176,308 - 42,310,728 (+)	NCBI		HuRef
CHM1_1	3	42,083,864 - 42,218,481 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	42,031,601 - 42,243,885 (+)	NCBI		T2T-CHM13v2.0

Trak1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	121,126,568 - 121,303,985 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	121,126,568 - 121,303,984 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	121,297,502 - 121,474,919 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	121,297,502 - 121,474,918 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	121,276,076 - 121,384,037 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	121,146,230 - 121,304,578 (+)	NCBI		MGSCv36	mm8
Celera	9	121,841,671 - 121,945,742 (+)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI
cM Map	9	72.41	NCBI

Trak1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	28,454,812 - 28,549,489 (-)	Ensembl
ChiLan1.0	NW_004955420	28,457,179 - 28,547,585 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRAK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	42,055,375 - 42,192,930 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	41,982,593 - 42,197,693 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	41,920,678 - 42,135,881 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	42,184,846 - 42,399,066 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	42,262,630 - 42,399,068 (+)	Ensembl			panPan2	panpan1.1

TRAK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	11,221,008 - 11,383,242 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	11,266,216 - 11,381,177 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	11,302,201 - 11,419,115 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	11,508,856 - 11,670,902 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	11,508,840 - 11,671,019 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	11,311,019 - 11,472,693 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	11,453,450 - 11,615,335 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	11,456,851 - 11,619,205 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC110599009
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	197,429,584 - 197,521,638 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936473	30,568,151 - 30,660,753 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	25,774,250 - 25,935,828 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	25,773,345 - 25,934,770 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	28,540,574 - 28,592,253 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	3,536,589 - 3,668,622 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	3,446,484 - 3,668,347 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	163,535,326 - 163,746,166 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trak1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	77,331,992 - 77,399,741 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	77,330,449 - 77,470,156 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Trak1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	112,540,352 - 112,634,007 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	512
Count of miRNA genes:	245
Interacting mature miRNAs:	312
Transcripts:	ENSRNOT00000026106
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

RH134394

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	121,138,925 - 121,139,125 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	130,105,951 - 130,106,150	NCBI	Rnor6.0
Rnor_5.0	8	129,298,212 - 129,298,411	UniSTS	Rnor5.0
RGSC_v3.4	8	126,478,062 - 126,478,261	UniSTS	RGSC3.4
Celera	8	120,273,990 - 120,274,189	UniSTS
RH 3.4 Map	8	1282.3	UniSTS
Cytogenetic Map	8	q32	UniSTS

AU047959

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	129,938,279 - 129,938,580 (+)	Marker Load Pipeline
mRatBN7.2	8	121,060,757 - 121,061,058 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	130,022,975 - 130,023,275	NCBI	Rnor6.0
Rnor_5.0	8	129,219,077 - 129,219,377	UniSTS	Rnor5.0
RGSC_v3.4	8	126,385,485 - 126,385,785	UniSTS	RGSC3.4
Celera	8	120,197,198 - 120,197,498	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH140752

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	121,128,626 - 121,128,808 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	130,095,654 - 130,095,835	NCBI	Rnor6.0
Rnor_5.0	8	129,287,915 - 129,288,096	UniSTS	Rnor5.0
RGSC_v3.4	8	126,467,765 - 126,467,946	UniSTS	RGSC3.4
Celera	8	120,263,693 - 120,263,874	UniSTS
RH 3.4 Map	8	1282.1	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026106 ⟹ ENSRNOP00000026106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	129,924,808 - 130,016,870 (+)	Ensembl
mRatBN7.2 Ensembl	8	121,047,355 - 121,139,367 (+)	Ensembl
Rnor_6.0 Ensembl	8	130,009,573 - 130,106,382 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101633 ⟹ ENSRNOP00000092949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	129,861,977 - 130,016,870 (+)	Ensembl
mRatBN7.2 Ensembl	8	120,984,431 - 121,139,357 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109867 ⟹ ENSRNOP00000081421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	129,936,351 - 130,016,866 (+)	Ensembl
mRatBN7.2 Ensembl	8	121,047,054 - 121,139,357 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112022 ⟹ ENSRNOP00000078079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	129,938,935 - 130,012,425 (+)	Ensembl
mRatBN7.2 Ensembl	8	121,047,355 - 121,134,891 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118223 ⟹ ENSRNOP00000088532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	129,957,629 - 130,016,870 (+)	Ensembl
mRatBN7.2 Ensembl	8	121,085,193 - 121,139,367 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168194 ⟹ ENSRNOP00000099413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	129,963,230 - 130,016,863 (+)	Ensembl

RefSeq Acc Id:

NM_001134565 ⟹ NP_001128037

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,808 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,047,286 - 121,139,357 (+)	NCBI
Rnor_6.0	8	130,009,573 - 130,106,382 (+)	NCBI
Rnor_5.0	8	129,143,133 - 129,298,643 (+)	NCBI
RGSC_v3.4	8	126,372,084 - 126,478,493 (+)	RGD
Celera	8	120,183,796 - 120,274,421 (+)	RGD

Sequence:

show sequence

ATGGCATTGGCGATTCAGCTCAGGCAGCCCTCCAGGGCCCAACCTCTGCCGGGACTCGACCACA
CACTGGCTGGGACAAACTCCTGTGACGTGTGCAACAGCACCAACCTTCCAGAAGTGGAGATCAT
TAGCCTGCTGGAGGAGCAGCTGCCCCACTACAAGCTAAGAGCGGACACCATCTATGGTTATGAC
CACGATGACTGGCTGCACACGCCCCTCATCTCCCCAGATGCCAACATCGACCTCACAACCGAGC
AGATCGAAGAGACGCTGAAGTACTTCCTTCTATGTGCCGAAAGAGTTGGCCAGATGACTAAGAC
ATACAATGACATTGATGCTGTCACAAGGCTTCTTGAGGAGAAAGAGCGGGATTTGGAGCTGGCT
GCGAGGATCGGCCAGTCATTGTTGAAGAAGAACAAGACCCTAACTGAGAGGAACGAACTGCTGG
AAGAGCAGGTGGAGCACATCCGGGAAGAGGTGTCTCAGCTCCGCCATGAGCTGTCCATGAAGGA
TGAGCTGCTTCAGTTCTACACCAGTGCCGCGGAGGAGAGTGAGCCTGAGTCTGTCTGCTCAACC
CCGCTGAAGAGGAACGAGTCATCCTCCTCCGTCCAGAATTACTTCCACCTGGACTCTCTTCAGA
AGAAGCTGAAGGACCTCGAAGAGGAGAACGTCGTACTTCGATCTGAGGCTTGTCAGCTGAAGAC
GGAGACCATCACCTATGAGGAGAAGGAGCAGCAGCTGGTGAACGACTGTGTGAAGGAGCTGAGG
GATGCTAACGTCCAGATTGCGAGCATCTCTGAGGAGCTGGCCAAGAAGACGGAAGATGCCGCCC
GCCAGCAGGAGGAGATCACGCACCTGCTGTCGCAAATCGTGGACTTGCAGAAGAAGGCGAAATC
CTGTGCGGTGGAAAATGAAGAACTTGTCCAGCACCTGGGCGCTGCCAAGGATGCGCAGCGCCAA
CTCACAGCCGAGCTTCGAGAGCTGGAGGATAAGTACGCCGAATGCATGGAGATGCTTCATGAGG
CTCAGGAGGAACTGAAGAACCTGCGGAACAAGACGATGCCCACATCCCGGCGCTACCACTCCCT
GGGCCTGTTCCCCATGGACTCCTTGGCTGCCGAAATTGAGGGAACCATGCGCAAGGAGCTGCAG
CTGGAAGAGCCGGAGTCCCCAGACATCACCCACCAGAAGCGTGTCTTTGAGACGGTGAGAAATG
TCAATCAAGTGGTCAAGCAGAGATCGCTAACCCCTTCCCCCATGAACATCCCGGGCTCCAACCA
GTCTTCAGCCATGAACTCCCTCCTGTCCAGCTGCGTCAGCACCCCCCGTTCCAGCTTCTACGGC
AGCGATGTCAGCCACGTGGTCCTCGATAACAAAACCAACAGCATCCTCCTGGAAACTGAGGCAG
CCGACCTGGGGAATGAGGAGCACAATAAGAAGCCGGGCACACCAGGCACACCAGGCTCCCATGA
CCTGGAGACGGCACTTAGGCGGCTATCCCTGCGCCGAGAGAACTACCTATCTGAGCGGAGGTTC
TTCGAGGAGGAGCAGGAGAGGAAGCTGCGAGAGCTGGCTGAGAAGGGAGAGCTGCACAGTGGCT
CGCTCACGCCCACCGAGAGCATCATGTCCCTGGGCACACACTCACGCTTCTCCGAGTTCACGGG
CTTCTCCGGCATGTCCTTCAGCAGCCGCTCCTACCTGCCCGAGAAGCTGCAGATCGTGAAGCCA
CTCGAAGGTTCAGCCACACTTCACCATTGGCAGCAATTGGCCCAGCCTCACCTCGGGGGCATCC
TGGACCCCCGCCCTGGTGTGGTCACCAAGGGCTTCCGGACTTTGGACGTTGACCTGGATGAAGT
GTACTGCCTTAACGACTTTGAGGAAGATGACACAGGTGACCACATTTCTCTGGCGGGCCTAGCT
ACCTCCACAACAATTCAGCACATGGAGACCTCAGCGCACCACCCTGGGAAGTGCATGTCACAGA
CCAACTCGACTTTCACCTTTACCACCTGCCGCATCCTGCACCCTTCAGACGAGCTCACGCGGGT
CACGCCAAGCCTTAACTCAGCCCCAGCTCCATCTTGTAGCAGCACCAGCCACTTGAAATCCACG
CCGGTGGCCACGCCATGCACCCCCCGGAGACTGAGCCTGGCCGAGTCCTTCACAAACGTCCGCG
AGTCCACGACAACCATGAGCACGTCCCTGGGGCTGGTGTGGTTGCTGAAGGAACGAGGCATCTC
AGCGGCTGTGTACGACCCCCAGAGTTGGGACAGAGCCGGCAGGGGCTCCCTCCTCCACTCTTAT
ACCCCTAGGATGGCTGTGATCCCGTCCACCCCACCAAATTCCCCTATGCAGACGCCCTCGGCCT
CCCCGCCCTCCTTCGAGTTCAAGTGCACGAGCCCTCCCTACAACAACTTCCTGGCTTCCAAGCC
TGCCAGCTCCATCCTGAGGGAGGTGAGGGAGAAGAAGCACGTGAGGAGCAGTGAGAGCCAGACG
GACGTGTCTGTCTCCAACCTTAACCTTGTGGACAAAGTCAGGAGGTTTGGGGTGGCCAGAGTGG
TGAACTCAGGACGAGCCCACATCCCCACCTTGACTGAGGATCAGGGACCTCTCCTCTGTGGACC
GACCGGGCCAGCACACGCTCTTGTCCCTGGGGGCCTGGTCCCCGAGGGACTGCCTCTTGGGTGC
CCCAGTGGCATCCGACGGAATCGCAGCTTCCCCACCATGGTCGGGTCCAGCGTGCAGATGAGGG
CTCCTGTAATCCTCACCTCTGGCATCTTAATGGGTGCTAAGCTCCCCAAACAGACTAGCTTGCG
GTGAGGCTGGGGGATCGCTGCCCCATCTGCTCCCTGCCTCCTGTCCCCGACAGAGCACTCACAC
CCTTGTCTCCTCTGAGGTCTGCTTCTTCTGAGCTAGACAGATCAACCGTGTGCCTCGAGGAGGG
AGGTGGACCTCCACATGGTGTGTATACAGGACTCTCTCTTCCAATCCACAGGAAGTAATAACCC
TACAAGGTCACACTCTGGGGAGGATGGCGCCTGAGCTCACCTAGGGGAAGGTGGTGTCCTTTCT
TCCTTACTTTTAAGAAGCACTGAAATTCCCAAGGCTGTTCTTATCCCATGGATAGGAATCTGGT
GAATTCTGCCTAAGACTGTCTGGTTGCACACGCAGCTGCCACGTGGCACAGGTCTCCTTGCTTG
CCTGTGACAGCCGACCGGGCTGCCCGCTCTCAGAGAGTTGTCCTTTCAGTCGTAGGTGGCCCAG
CTTCATCAAGGCAAGGTCTGCACTATCCTGCCCCGACGGCCTGTCTGTTCTCTAGACATGACTT
CTTCTCATGTCTCTGACTTGAAGTTAACCTTGCATTTTGTCACAAGTTGTCAGGGTTAGAGCCT
GACGCGAAAAGAATGTATTTACACTCCGACGACGCACCATCAGGCGGCCCCTCCGAGTTCTGTT
CGTTTGATTTTCCTTTTCTTTTCCATTTTTAGAATTTTCATTTGCAGGGAAGTCTCAGTACTGG
CAGTTTCTCTCTTGGTTCTGACACCAAAATGCAAGGGGCGCACACGCTGACTTGCTAATGACAT
AGCTTATTTCCGGGACCCAGTGTCACACAGCCAGGTTGATATGTGACCAGTTATCACTGTAACC
ATAGGATCAAGGGGAAAAGGGACAAGACCGTTAGCCCTATACACAGTGGAGGGGAGGGGCCGAA
TCCATAGCACACCGCAGTGCATCCTGGGTCAGGGTGTGTCAGGGTTGATGGCTGCTGGCCCCTT
TGCACTCTGAAGGGAGCTCGGGCCGTGTGGTAGAACTCTGTGGCCATTCTGTGGCTGCATTTTT
TTTTCCAGTCCTCTCGTTTCAAAACTAGAATTACGTTTCCTCCCCATCCCCCAAGTGTACTGTC
CCCATTTCCACCCATAGGAAAAGACCAGAGGTGCTTATGAGTGGAAGAAGCGGGAGCAAGTGAG
TGACCTGGGTCGGTCGCCGTCAGCTGTGCAGTGACGAACTTTTATTTATTATCCACGTGTGCTG
TATTTTAATCAGATGCCCTCTCTGCTTCCAGCTCCAGCCTCTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGATTGATTGATTCCGGCCCAGGTATATATTATTTATTTACTTTTGTCTGAGGATGG
CTGTACATCTGTGTGTCACATGGTCACCTGCCCCAGACATCTGTGGAAGATGTAGCACCCTGTG
TACTAGAAATTATCACACGAACAACCCCTCCCCCAGCAAAAGATGTGTCCTTGAATCGAGCGAG
GGTCACCTTATGTCCACCAAGGATGCTCGAGAAGGTCCCCAAGCAGCAAACTTCAGTCCCACTA
TTTCAAACTATTTATTCTCCAGACGGAGCTGGTTCATCATGTTCTCAGCTCTCCTGGCTGCCGT
GTACGTGTGCAGTCACTCCAAGTAACATACCCTTTTATTTGAATGTATTTTTAAAGCAGTAGGT
AGGACGGCAAAGGAGGGTGACCACCTTGGCGTGGATGGACCGTGTCACATGTTCAGAGGGGCCT
CCTGTCCGCACTGGAAACGCCAGTGTGAGAACCGGCACTTCAGAGGTCGTGATAGTGTAGTTAG
CAAACCGGTGATCAACATTGAGCCACACTACCTAAAAGCCTGTTGTAATGCATCAGACCGGTGA
CAAGATTTCATTCACTAACGAATATCAATAAAACAAGCTCAAAGGATGGAAA

hide sequence

RefSeq Acc Id:

XM_006244101 ⟹ XP_006244163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,452 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,046,909 - 121,139,357 (+)	NCBI
Rnor_6.0	8	130,006,786 - 130,106,382 (+)	NCBI
Rnor_5.0	8	129,143,133 - 129,298,643 (+)	NCBI

Sequence:

show sequence

TTACCCTGCTGGGGATGGGGACGGGGCTTCGGTCATCAAGACTGGGAAGGGTATGCAGCCACAG
GAGAAGGCCTGGGAGTGTATTTGGTTTCACATTGCTACGGCAACCTAACTGGCACAAGCAGCTT
AAGGGGAAGGTGGGTTAATTTTGGCTCACAGTTTAGGGTGCAGTTTGTCATGGTGGGGAAAAGT
TAGTGCAGGACCGTGAGGTTGCTGGTCTCGCTGCATCCACAGTTGTCAAGGAGACGAATGAATT
ACACAGCCTAGGACCCATGGGATAGCGCAGTCCGTGCTCACGCTTGGCTTTCCCACCTGAGTGA
ACACAGTTGAGAAACTTCCCGGCACACGTGTCCAGAGGTTTGTCTTAGGAGACAAATGGTTCTA
GAACCCATCAGGGTGACAGTGTGAACCATCTCAGGGTGGATGCGGTCACCATGGTTACACAGAG
TCTGAGATCAGGGACCTTCTGTTCAGAACCTGCTTCATCGATGTGTCATTCTGTGGCTTGGGTC
GGCATGTCACAGAGTTGTCACGGAGTTGTCACAGAGGCTGGAGACGGTAGAACTGGGCCCTAGG
CAGCATGCATGGCCCAGCATGGCTGTTCAGTGTAGTTTGGTTCTCTCTTGTGTTGTATTTCTCC
AGACTGGCATGGGCGTCATGGAAGTGGCATGCAAGTGTCAGTGTTGACAGAGGAAGGGCTCCAC
ACGCTATGTCCACAGAAAGGGCTCCAACACCGTGTGTGTGTCAGCGCTCTGTCATACTATAGTT
TGCCCACACACACATCAGGACACTTTGCACACACAGATGCAGGACACTTTGCCCACACACATCA
GGACAGTTTGCCTATGCACAATGGCTCCCGGCAGCTTCTCTTTGTTCTGAGTTAACTGTAAAGT
TACACCCAGGACACCCTGTGTGTTAGGAGCTGCCTGTCTCCTGAGGGGCACAGAAACAGCTGTG
GTTCCTAAGTATGCCAGCGTTTCCTCCCTGTCCTGGGCCTGTACACCCCTCTTTCCTGCTCCCT
CTGGTGTAGCATCTATGGCTGCCCTCCCCTGTGCTCCTGACCCTTCCCCTGTGGCCCTGACCCC
TCCTCTGTGCCCCTGATCCCTCCCCTGTGGCCCTGACCCCTCCTCTGTGCCCCTGACCCCTTCC
CTGTGCCCCTGACCCCTCTCTGTGCCCCTGATCCCTTCCCTGTGCCCCTGACCCCTCCCCTGTG
CCCCTAATCTCTCCTCACTGCCCCTGATCTCTCCTCAGTGCCCCTGATCTCTCTCTCTTCAGGG
CCCCTGACCCCTCTCCTCAGTGCCCCTGATCCCTCTCCTGTGCCCCTGACCCCCTGTCCTTGTC
TATTACTCGAGGGCACAGTGTCAGAAACACCCACATATGACACAATCCATCTTTCTTCTCAGTG
CAGGAACATGTTGGGAGCTCCTTCTTGGGAGAATCCCAGTGGGCCCCGCAGGCCCATGTTCTTG
TCTCTACAGGGCAGCTCAGTTCCAGCTCCTACAAGACCTGATCCTTGAGTGTGGATGGGGGAGT
GGTTTCACTCCACTGAGCTTCTGGAGGTTCCTTTTTACAGTGGCCTCTAAAGGTCTTGAGTAGG
ACCCCTAGGTCTCTTGGGTCCATCTCCTTTCTATGTCCCCTCTGGGGACATGGGCCTCCTTGTG
GGGACTCCTTTTGAGACCTTGAGCATAGTGGGGAGTAATCATCTTCTGGCTCTGAGCCCTGAGT
GAGAGGGAGTAGGGTCTGCTTTTGAGCCCTGAATTGGAGAGTCCTGAGTAGGGAGGCAGTGTCC
AGGTAGGAAGCTGACTGGGGCGACAGAGGAGCATGAAGAAGTTGGCTGCACAGCGATGCAGGAC
AAGCAGGGCACATGAGAGGGTGTTAAGGACCATCTACTGCATGCTCTGGAGGGGAAGAGACGAG
GGAGACCGGGACACTCCAAATATTGGAGCTGGGCTCCCAGCCCTGACTCTGCCAGTGAAATCCT
GGGAACCTCAGCCTGTCCAACCAGTTTCGCTTTCTCAAAGCGTGACAACCGAGGGATTGCCAGT
GGAGGGTCAGAAGCATCCAGCTGTCCAGCCTGTGGGATGTGGAAACCCGAGGCTTTTTGTTACG
ATGCCTGTAGCAAGCCCCTGGGGAGCCACTGAGAGCCTCAGTTCATACCCATGATGCCCAGCGA
CAGTCTCAGACACAGCCTTGCCAATTCAGGAACGTGGTGTATTTGAAGAGCTGGGTATTCAGCC
CCTGCAGTCCCTCCCTGCCAAGAAAGTCCTATCAGGTGGTCAGTGCAACAAAGACATAAAATGG
AAACGCGTTCCCCGGAGACCTTGAATGTGCCCTGAGCTCTTTGTGGATTCTGAGGGCTCTGCCA
AGCACAGCCCCGGGACGCTGCCTGGCAATGTGCCTCCACCCTCACTTCCCAGGGAGTCCTGAGA
AGAACAGTGGCTTTCTGTTCTACGCTACAGTTTAGGCAAAACTAACTGGCCATCAGAAAGGCTT
CCCTCCCTGCCCGTGCCCCCTCGCCCCACCCTGGAGAGGTGTTGTGTTGTGGGTGCGCCTTTTT
TTCTGTTTGGGGTAGTTTCATAAGATGAGGTGATAGGGTTCCCGGTTGCCGGAGTTACGTAACC
CGCCGTGCACGTAACCCGCTGTGCGCCCTGGGCAGCGTGAGTATCTTCAGCTCTGTCCCGACAA
GTAAGCTTGGAAAACTGCTGAGGCAGGCTCAGAGCGGTGGCCAAGCTCTCGTGGAGGACCACTC
CGTCTCCCAGTCCCCTCTGGAGTTTGCGTCTGCCCATGGCATTGGCGATTCAGCTCAGGCAGCC
CTCCAGGGCCCAACCTCTGCCGGGACTCGACCACACACTGGCTGGGACAAACTCCTGTGACGTG
TGCAACAGCACCAACCTTCCAGAAGTGGAGATCATTAGCCTGCTGGAGGAGCAGCTGCCCCACT
ACAAGCTAAGAGCGGACACCATCTATGGTTATGACCACGATGACTGGCTGCACACGCCCCTCAT
CTCCCCAGATGCCAACATCGACCTCACAACCGAGCAGATCGAAGAGACGCTGAAGTACTTCCTT
CTATGTGCCGAAAGAGTTGGCCAGATGACTAAGACATACAATGACATTGATGCTGTCACAAGGC
TTCTTGAGGAGAAAGAGCGGGATTTGGAGCTGGCTGCGAGGATCGGCCAGTCATTGTTGAAGAA
GAACAAGACCCTAACTGAGAGGAACGAACTGCTGGAAGAGCAGGTGGAGCACATCCGGGAAGAG
GTGTCTCAGCTCCGCCATGAGCTGTCCATGAAGGATGAGCTGCTTCAGTTCTACACCAGTGCCG
CGGAGGAGAGTGAGCCTGAGTCTGTCTGCTCAACCCCGCTGAAGAGGAACGAGTCATCCTCCTC
CGTCCAGAATTACTTCCACCTGGACTCTCTTCAGAAGAAGCTGAAGGACCTCGAAGAGGAGAAC
GTCGTACTTCGATCTGAGGCTTGTCAGCTGAAGACGGAGACCATCACCTATGAGGAGAAGGAGC
AGCAGCTGGTGAACGACTGTGTGAAGGAGCTGAGGGATGCTAACGTCCAGATTGCGAGCATCTC
TGAGGAGCTGGCCAAGAAGACGGAAGATGCCGCCCGCCAGCAGGAGGAGATCACGCACCTGCTG
TCGCAAATCGTGGACTTGCAGAAGAAGGCGAAATCCTGTGCGGTGGAAAATGAAGAACTTGTCC
AGCACCTGGGCGCTGCCAAGGATGCGCAGCGCCAACTCACAGCCGAGCTTCGAGAGCTGGAGGA
TAAGTACGCCGAATGCATGGAGATGCTTCATGAGGCTCAGGAGGAACTGAAGAACCTGCGGAAC
AAGACGATGCCCACATCCCGGCGCTACCACTCCCTGGGCCTGTTCCCCATGGACTCCTTGGCTG
CCGAAATTGAGGGAACCATGCGCAAGGAGCTGCAGCTGGAAGAGCCGGAGTCCCCAGACATCAC
CCACCAGAAGCGTGTCTTTGAGACGGTGAGAAATGTCAATCAAGTGGTCAAGCAGAGATCGCTA
ACCCCTTCCCCCATGAACATCCCGGGCTCCAACCAGTCTTCAGCCATGAACTCCCTCCTGTCCA
GCTGCGTCAGCACCCCCCGTTCCAGCTTCTACGGCAGCGATGTCAGCCACGTGGTCCTCGATAA
CAAAACCAACAGCATCCTCCTGGAAACTGAGGCAGCCGACCTGGGGAATGAGGAGCACAATAAG
AAGCCGGGCACACCAGGCACACCAGGCTCCCATGACCTGGAGACGGCACTTAGGCGGCTATCCC
TGCGCCGAGAGAACTACCTATCTGAGCGGAGGTTCTTCGAGGAGGAGCAGGAGAGGAAGCTGCG
AGAGCTGGCTGAGAAGGGAGAGCTGCACAGTGGCTCGCTCACGCCCACCGAGAGCATCATGTCC
CTGGGCACACACTCACGCTTCTCCGAGTTCACGGGCTTCTCCGGCATGTCCTTCAGCAGCCGCT
CCTACCTGCCCGAGAAGCTGCAGATCGTGAAGCCACTCGAAGGTTCAGCCACACTTCACCATTG
GCAGCAATTGGCCCAGCCTCACCTCGGGGGCATCCTGGACCCCCGCCCTGGTGTGGTCACCAAG
GGCTTCCGGACTTTGGACGTTGACCTGGATGAAGTGTACTGCCTTAACGACTTTGAGGAAGATG
ACACAGCGCACCACCCTGGGAAGTGCATGTCACAGACCAACTCGACTTTCACCTTTACCACCTG
CCGCATCCTGCACCCTTCAGACGAGCTCACGCGGGTCACGCCAAGCCTTAACTCAGCCCCAGCT
CCATCTTGTAGCAGCACCAGCCACTTGAAATCCACGCCGGTGGCCACGCCATGCACCCCCCGGA
GACTGAGCCTGGCCGAGTCCTTCACAAACGTCCGCGAGTCCACGACAACCATGAGCACGTCCCT
GGGGCTGGTGTGGTTGCTGAAGGAACGAGGCATCTCAGCGGCTGTGTACGACCCCCAGAGTTGG
GACAGAGCCGGCAGGGGCTCCCTCCTCCACTCTTATACCCCTAGGATGGCTGTGATCCCGTCCA
CCCCACCAAATTCCCCTATGCAGACGCCCTCGGCCTCCCCGCCCTCCTTCGAGTTCAAGTGCAC
GAGCCCTCCCTACAACAACTTCCTGGCTTCCAAGCCTGCCAGCTCCATCCTGAGGGAGGTGAGG
GAGAAGAAGCACGTGAGGAGCAGTGAGAGCCAGACGGACGTGTCTGTCTCCAACCTTAACCTTG
TGGACAAAGTCAGGAGGTTTGGGGTGGCCAGAGTGGTGAACTCAGGACGAGCCCACATCCCCAC
CTTGACTGAGGATCAGGGACCTCTCCTCTGTGGACCGACCGGGCCAGCACACGCTCTTGTCCCT
GGGGGCCTGGTCCCCGAGGGACTGCCTCTTGGGTGCCCCAGTGGCATCCGACGGAATCGCAGCT
TCCCCACCATGGTCGGGTCCAGCGTGCAGATGAGGGCTCCTGTAATCCTCACCTCTGGCATCTT
AATGGGTGCTAAGCTCCCCAAACAGACTAGCTTGCGGTGAGGCTGGGGGATCGCTGCCCCATCT
GCTCCCTGCCTCCTGTCCCCGACAGAGCACTCACACCCTTGTCTCCTCTGAGGTCTGCTTCTTC
TGAGCTAGACAGATCAACCGTGTGCCTCGAGGAGGGAGGTGGACCTCCACATGGTGTGTATACA
GGACTCTCTCTTCCAATCCACAGGAAGTAATAACCCTACAAGGTCACACTCTGGGGAGGATGGC
GCCTGAGCTCACCTAGGGGAAGGTGGTGTCCTTTCTTCCTTACTTTTAAGAAGCACTGAAATTC
CCAAGGCTGTTCTTATCCCATGGATAGGAATCTGGTGAATTCTGCCTAAGACTGTCTGGTTGCA
CACGCAGCTGCCACGTGGCACAGGTCTCCTTGCTTGCCTGTGACAGCCGACCGGGCTGCCCGCT
CTCAGAGAGTTGTCCTTTCAGTCGTAGGTGGCCCAGCTTCATCAAGGCAAGGTCTGCACTATCC
TGCCCCGACGGCCTGTCTGTTCTCTAGACATGACTTCTTCTCATGTCTCTGACTTGAAGTTAAC
CTTGCATTTTGTCACAAGTTGTCAGGGTTAGAGCCTGACGCGAAAAGAATGTATTTACACTCCG
ACGACGCACCATCAGGCGGCCCCTCCGAGTTCTGTTCGTTTGATTTTCCTTTTCTTTTCCATTT
TTAGAATTTTCATTTGCAGGGAAGTCTCAGTACTGGCAGTTTCTCTCTTGGTTCTGACACCAAA
ATGCAAGGGGCGCACACGCTGACTTGCTAATGACATAGCTTATTTCCGGGACCCAGTGTCACAC
AGCCAGGTTGATATGTGACCAGTTATCACTGTAACCATAGGATCAAGGGGAAAAGGGACAAGAC
CGTTAGCCCTATACACAGTGGAGGGGAGGGGCCGAATCCATAGCACACCGCAGTGCATCCTGGG
TCAGGGTGTGTCAGGGTTGATGGCTGCTGGCCCCTTTGCACTCTGAAGGGAGCTCGGGCCGTGT
GGTAGAACTCTGTGGCCATTCTGTGGCTGCATTTTTTTTTCCAGTCCTCTCGTTTCAAAACTAG
AATTACGTTTCCTCCCCATCCCCCAAGTGTACTGTCCCCATTTCCACCCATAGGAAAAGACCAG
AGGTGCTTATGAGTGGAAGAAGCGGGAGCAAGTGAGTGACCTGGGTCGGTCGCCGTCAGCTGTG
CAGTGACGAACTTTTATTTATTATCCACGTGTGCTGTATTTTAATCAGATGCCCTCTCTGCTTC
CAGCTCCAGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGATTCCGGCCCA
GGTATATATTATTTATTTACTTTTGTCTGAGGATGGCTGTACATCTGTGTGTCACATGGTCACC
TGCCCCAGACATCTGTGGAAGATGTAGCACCCTGTGTACTAGAAATTATCACACGAACAACCCC
TCCCCCAGCAAAAGATGTGTCCTTGAATCGAGCGAGGGTCACCTTATGTCCACCAAGGATGCTC
GAGAAGGTCCCCAAGCAGCAAACTTCAGTCCCACTATTTCAAACTATTTATTCTCCAGACGGAG
CTGGTTCATCATGTTCTCAGCTCTCCTGGCTGCCGTGTACGTGTGCAGTCACTCCAAGTAACAT
ACCCTTTTATTTGAATGTATTTTTAAAGCAGTAGGTAGGACGGCAAAGGAGGGTGACCACCTTG
GCGTGGATGGACCGTGTCACATGTTCAGAGGGGCCTCCTGTCCGCACTGGAAACGCCAGTGTGA
GAACCGGCACTTCAGAGGTCGTGATAGTGTAGTTAGCAAACCGGTGATCAACATTGAGCCACAC
TACCTAAAAGCCTGTTGTAATGCATCAGACCGGTGACAAGATTTCATTCACTAACGAATATCAA
TAAAACAAGCTCAAAGGATGGAAA

hide sequence

RefSeq Acc Id:

XM_006244102 ⟹ XP_006244164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,956,289 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,078,766 - 121,139,357 (+)	NCBI
Rnor_6.0	8	130,040,948 - 130,106,382 (+)	NCBI
Rnor_5.0	8	129,143,133 - 129,298,643 (+)	NCBI

Sequence:

show sequence

TTCCACTTAGCAGGTGACACTGATTGTCCAGCAAGGTCTGAGACGTTGACCAAGTGCCTGTAGC
TTCGTTGGAGATTTCTCAGTCTCCCTAAGGAGCTTTGCTTCCTTGTTTCTTTATTTCTTTAGTT
ACTTGTGTGCACACGTCTGAAACTTTACATGCCTATAGAGTCCAGAGATCAACACTGGGTGCCA
CCTTTTTCTCCACCTTATTTTGGGAGACAGGGTCCCCCAAAGATAATTAAAACACATATTTACA
ATTTCAGAATTTTTATGCAAAAGCCTTTGTCGCTGTTGTTGTGGGAAGACATTTTCGATGGTCA
GACTTGGAGATCAGAGGATGGAGCTAAAGGCACCTAGTACGTTTAGGTCAGGGTGCTGCAGAAT
GTTCTGGAATGCCCAGAAGAGCCTTCCAGAAAGAATTCTCTAACTCTGAGTGCTGGAGGGGAAC
ATATGCCTCTGGGCTGGAGTTTGAAGTTACAGTAAATCTGGAAAGATCTGTTCCATTGTTCGGT
ATATCAGTTTTATAATGAAACATTTTAAGCATGCCAACCACTTAGAATTAAGTCTATTCGATGT
TTTGTTTTGTTTGTTTTTTAATGAATTCCTTGTGCTTTTGTAAGGACTCTCAAAGCCCCATCCT
TTAACTCCATCCCCAGGGGCATCTGCCTCTTGGTAGCTGTTCTTGATCAGACACCTAAGGGACA
GTAAATTAAATGGCACTATATGACACGGGGTCCTTTATGTTGACATTCCCCTCAATTCGTACGT
TGCTACATTTTCAAGAAGTTTGAATAAAGACACAAGCATAAATAGTAATGGAATGTGAGTGAAA
ATGTTTTCATTTTCTGGGTCATTCATTCAGTCTCCTTTAAGTGGCTGTTTTAAATTTTAAAGTT
AAGAAAAAAATTAGGAAGGGCCATTAAATGTTTTAAATTAAGGAAAGAAAACCAAAAGACAATC
CTTTGCAAATTTTAAAAGGCCTCGGTTTTTAGATGCAAGAAAAAACACCACAACTTTCTGAAGT
GAACCAGGTTTAGGCATAGGAACCAGGCCTTTCACCTGAGAGAGGGGGTGGTGCTTCTAAGCCA
CGCCCACATCCTTCCTTCTCCCTGCGCGGCAGTGGCACCTCTGCTCCCAGCATCCTTGGAAGAC
ATTTCCTTCATCTCTGTATCATTTTTTTTAAAGAGCTGGTCAGTTTCTATGGCAACAGTTAGAT
TGAAAGCTGAGCAGCGAGCAGGGGGCGAGGCTTGAGCGAGTCAGCGGGTGGTGGTGTGTGGCTC
TGACGTCACCCTCGGGGCGTCTGGATAGGATGATTCCAGCTACTCCCTTTCAGGGCTGCTGTCC
AGTGCGCCTCATCAGCCTGGCCTGCGGGGTCTCTCAGTGCTCTGCAAACAGGCTCCCTCTCCTC
TGCCTCCACTCCCCCACCCCACCCCCACGCCCCTGTAGAGTCTTCCTTTCCTCTGCCCCCTCGC
CCATCCTGGCTCCAGACTATCATTAAGAATGCACAGCCAAATTCTGCAGTGTTTGGGGATGCTC
TTCTGCCGGGTGTTCTGGAAGGGCCGGGAGGCATGGCAGCGTTTGACTTGACAATTCATGGCGC
CGTGAAGTCCGTTCCTTCCTCTGCAAGAATACTGACTATGCAGAAATTCACTGACACGGATTAT
TATGAACTGGATTGGTATTATGAAGAATGCTCAGACGTTCTATGTGCCGAAAGAGTTGGCCAGA
TGACTAAGACATACAATGACATTGATGCTGTCACAAGGCTTCTTGAGGAGAAAGAGCGGGATTT
GGAGCTGGCTGCGAGGATCGGCCAGTCATTGTTGAAGAAGAACAAGACCCTAACTGAGAGGAAC
GAACTGCTGGAAGAGCAGGTGGAGCACATCCGGGAAGAGGTGTCTCAGCTCCGCCATGAGCTGT
CCATGAAGGATGAGCTGCTTCAGTTCTACACCAGTGCCGCGGAGGAGAGTGAGCCTGAGTCTGT
CTGCTCAACCCCGCTGAAGAGGAACGAGTCATCCTCCTCCGTCCAGAATTACTTCCACCTGGAC
TCTCTTCAGAAGAAGCTGAAGGACCTCGAAGAGGAGAACGTCGTACTTCGATCTGAGGCTTGTC
AGCTGAAGACGGAGACCATCACCTATGAGGAGAAGGAGCAGCAGCTGGTGAACGACTGTGTGAA
GGAGCTGAGGGATGCTAACGTCCAGATTGCGAGCATCTCTGAGGAGCTGGCCAAGAAGACGGAA
GATGCCGCCCGCCAGCAGGAGGAGATCACGCACCTGCTGTCGCAAATCGTGGACTTGCAGAAGA
AGGCGAAATCCTGTGCGGTGGAAAATGAAGAACTTGTCCAGCACCTGGGCGCTGCCAAGGATGC
GCAGCGCCAACTCACAGCCGAGCTTCGAGAGCTGGAGGATAAGTACGCCGAATGCATGGAGATG
CTTCATGAGGCTCAGGAGGAACTGAAGAACCTGCGGAACAAGACGATGCCCACATCCCGGCGCT
ACCACTCCCTGGGCCTGTTCCCCATGGACTCCTTGGCTGCCGAAATTGAGGGAACCATGCGCAA
GGAGCTGCAGCTGGAAGAGCCGGAGTCCCCAGACATCACCCACCAGAAGCGTGTCTTTGAGACG
GTGAGAAATGTCAATCAAGTGGTCAAGCAGAGATCGCTAACCCCTTCCCCCATGAACATCCCGG
GCTCCAACCAGTCTTCAGCCATGAACTCCCTCCTGTCCAGCTGCGTCAGCACCCCCCGTTCCAG
CTTCTACGGCAGCGATGTCAGCCACGTGGTCCTCGATAACAAAACCAACAGCATCCTCCTGGAA
ACTGAGGCAGCCGACCTGGGGAATGAGGAGCACAATAAGAAGCCGGGCACACCAGGCACACCAG
GCTCCCATGACCTGGAGACGGCACTTAGGCGGCTATCCCTGCGCCGAGAGAACTACCTATCTGA
GCGGAGGTTCTTCGAGGAGGAGCAGGAGAGGAAGCTGCGAGAGCTGGCTGAGAAGGGAGAGCTG
CACAGTGGCTCGCTCACGCCCACCGAGAGCATCATGTCCCTGGGCACACACTCACGCTTCTCCG
AGTTCACGGGCTTCTCCGGCATGTCCTTCAGCAGCCGCTCCTACCTGCCCGAGAAGCTGCAGAT
CGTGAAGCCACTCGAAGGTTCAGCCACACTTCACCATTGGCAGCAATTGGCCCAGCCTCACCTC
GGGGGCATCCTGGACCCCCGCCCTGGTGTGGTCACCAAGGGCTTCCGGACTTTGGACGTTGACC
TGGATGAAGTGTACTGCCTTAACGACTTTGAGGAAGATGACACAGGTGACCACATTTCTCTGGC
GGGCCTAGCTACCTCCACAACAATTCAGCACATGGAGACCTCAGCGCACCACCCTGGGAAGTGC
ATGTCACAGACCAACTCGACTTTCACCTTTACCACCTGCCGCATCCTGCACCCTTCAGACGAGC
TCACGCGGGTCACGCCAAGCCTTAACTCAGCCCCAGCTCCATCTTGTAGCAGCACCAGCCACTT
GAAATCCACGCCGGTGGCCACGCCATGCACCCCCCGGAGACTGAGCCTGGCCGAGTCCTTCACA
AACGTCCGCGAGTCCACGACAACCATGAGCACGTCCCTGGGGCTGGTGTGGTTGCTGAAGGAAC
GAGGCATCTCAGCGGCTGTGTACGACCCCCAGAGTTGGGACAGAGCCGGCAGGGGCTCCCTCCT
CCACTCTTATACCCCTAGGATGGCTGTGATCCCGTCCACCCCACCAAATTCCCCTATGCAGACG
CCCTCGGCCTCCCCGCCCTCCTTCGAGTTCAAGTGCACGAGCCCTCCCTACAACAACTTCCTGG
CTTCCAAGCCTGCCAGCTCCATCCTGAGGGAGGTGAGGGAGAAGAAGCACGTGAGGAGCAGTGA
GAGCCAGACGGACGTGTCTGTCTCCAACCTTAACCTTGTGGACAAAGTCAGGAGGTTTGGGGTG
GCCAGAGTGGTGAACTCAGGACGAGCCCACATCCCCACCTTGACTGAGGATCAGGGACCTCTCC
TCTGTGGACCGACCGGGCCAGCACACGCTCTTGTCCCTGGGGGCCTGGTCCCCGAGGGACTGCC
TCTTGGGTGCCCCAGTGGCATCCGACGGAATCGCAGCTTCCCCACCATGGTCGGGTCCAGCGTG
CAGATGAGGGCTCCTGTAATCCTCACCTCTGGCATCTTAATGGGTGCTAAGCTCCCCAAACAGA
CTAGCTTGCGGTGAGGCTGGGGGATCGCTGCCCCATCTGCTCCCTGCCTCCTGTCCCCGACAGA
GCACTCACACCCTTGTCTCCTCTGAGGTCTGCTTCTTCTGAGCTAGACAGATCAACCGTGTGCC
TCGAGGAGGGAGGTGGACCTCCACATGGTGTGTATACAGGACTCTCTCTTCCAATCCACAGGAA
GTAATAACCCTACAAGGTCACACTCTGGGGAGGATGGCGCCTGAGCTCACCTAGGGGAAGGTGG
TGTCCTTTCTTCCTTACTTTTAAGAAGCACTGAAATTCCCAAGGCTGTTCTTATCCCATGGATA
GGAATCTGGTGAATTCTGCCTAAGACTGTCTGGTTGCACACGCAGCTGCCACGTGGCACAGGTC
TCCTTGCTTGCCTGTGACAGCCGACCGGGCTGCCCGCTCTCAGAGAGTTGTCCTTTCAGTCGTA
GGTGGCCCAGCTTCATCAAGGCAAGGTCTGCACTATCCTGCCCCGACGGCCTGTCTGTTCTCTA
GACATGACTTCTTCTCATGTCTCTGACTTGAAGTTAACCTTGCATTTTGTCACAAGTTGTCAGG
GTTAGAGCCTGACGCGAAAAGAATGTATTTACACTCCGACGACGCACCATCAGGCGGCCCCTCC
GAGTTCTGTTCGTTTGATTTTCCTTTTCTTTTCCATTTTTAGAATTTTCATTTGCAGGGAAGTC
TCAGTACTGGCAGTTTCTCTCTTGGTTCTGACACCAAAATGCAAGGGGCGCACACGCTGACTTG
CTAATGACATAGCTTATTTCCGGGACCCAGTGTCACACAGCCAGGTTGATATGTGACCAGTTAT
CACTGTAACCATAGGATCAAGGGGAAAAGGGACAAGACCGTTAGCCCTATACACAGTGGAGGGG
AGGGGCCGAATCCATAGCACACCGCAGTGCATCCTGGGTCAGGGTGTGTCAGGGTTGATGGCTG
CTGGCCCCTTTGCACTCTGAAGGGAGCTCGGGCCGTGTGGTAGAACTCTGTGGCCATTCTGTGG
CTGCATTTTTTTTTCCAGTCCTCTCGTTTCAAAACTAGAATTACGTTTCCTCCCCATCCCCCAA
GTGTACTGTCCCCATTTCCACCCATAGGAAAAGACCAGAGGTGCTTATGAGTGGAAGAAGCGGG
AGCAAGTGAGTGACCTGGGTCGGTCGCCGTCAGCTGTGCAGTGACGAACTTTTATTTATTATCC
ACGTGTGCTGTATTTTAATCAGATGCCCTCTCTGCTTCCAGCTCCAGCCTCTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGATTGATTCCGGCCCAGGTATATATTATTTATTTACTTTTGT
CTGAGGATGGCTGTACATCTGTGTGTCACATGGTCACCTGCCCCAGACATCTGTGGAAGATGTA
GCACCCTGTGTACTAGAAATTATCACACGAACAACCCCTCCCCCAGCAAAAGATGTGTCCTTGA
ATCGAGCGAGGGTCACCTTATGTCCACCAAGGATGCTCGAGAAGGTCCCCAAGCAGCAAACTTC
AGTCCCACTATTTCAAACTATTTATTCTCCAGACGGAGCTGGTTCATCATGTTCTCAGCTCTCC
TGGCTGCCGTGTACGTGTGCAGTCACTCCAAGTAACATACCCTTTTATTTGAATGTATTTTTAA
AGCAGTAGGTAGGACGGCAAAGGAGGGTGACCACCTTGGCGTGGATGGACCGTGTCACATGTTC
AGAGGGGCCTCCTGTCCGCACTGGAAACGCCAGTGTGAGAACCGGCACTTCAGAGGTCGTGATA
GTGTAGTTAGCAAACCGGTGATCAACATTGAGCCACACTACCTAAAAGCCTGTTGTAATGCATC
AGACCGGTGACAAGATTTCATTCACTAACGAATATCAATAAAACAAGCTCAAAGGATGGAAA

hide sequence

RefSeq Acc Id:

XM_008766680 ⟹ XP_008764902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,956,289 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,078,767 - 121,139,357 (+)	NCBI
Rnor_6.0	8	130,041,875 - 130,089,103 (+)	NCBI

Sequence:

show sequence

TTTAAATTAAGGAAAGAAAACCAAAAGACAATCCTTTGCAAATTTTAAAAGGCCTCGGTTTTTA
GATGCAAGAAAAAACACCACAACTTTCTGAAGTGAACCAGGTTTAGGCATAGGAACCAGGCCTT
TCACCTGAGAGAGGGGGTGGTGCTTCTAAGCCACGCCCACATCCTTCCTTCTCCCTGCGCGGCA
GTGGCACCTCTGCTCCCAGCATCCTTGGAAGACATTTCCTTCATCTCTGTATCATTTTTTTTAA
AGAGCTGGTCAGTTTCTATGGCAACAGTTAGATTGAAAGCTGAGCAGCGAGCAGGGGGCGAGGC
TTGAGCGAGTCAGCGGGTGGTGGTGTGTGGCTCTGACGTCACCCTCGGGGCGTCTGGATAGGAT
GATTCCAGCTACTCCCTTTCAGGGCTGCTGTCCAGTGCGCCTCATCAGCCTGGCCTGCGGGGTC
TCTCAGTGCTCTGCAAACAGGCTCCCTCTCCTCTGCCTCCACTCCCCCACCCCACCCCCACGCC
CCTGTAGAGTCTTCCTTTCCTCTGCCCCCTCGCCCATCCTGGCTCCAGACTATCATTAAGAATG
CACAGCCAAATTCTGCAGTGTTTGGGGATGCTCTTCTGCCGGGTGTTCTGGAAGGGCCGGGAGG
CATGGCAGCGTTTGACTTGACAATTCATGGCGCCGTGAAGTCCGTTCCTTCCTCTGCAAGAATA
CTGACTATGCAGAAATTCACTGACACGGATTATTATGAACTGGATTGGTATTATGAAGAATGCT
CAGACGTTCTATGTGCCGAAAGAGTTGGCCAGATGACTAAGACATACAATGACATTGATGCTGT
CACAAGGCTTCTTGAGGAGAAAGAGCGGGATTTGGAGCTGGCTGCGAGGATCGGCCAGTCATTG
TTGAAGAAGAACAAGACCCTAACTGAGAGGAACGAACTGCTGGAAGAGCAGGTGGAGCACATCC
GGGAAGAGGTGTCTCAGCTCCGCCATGAGCTGTCCATGAAGGATGAGCTGCTTCAGTTCTACAC
CAGTGCCGCGGAGGAGAGTGAGCCTGAGTCTGTCTGCTCAACCCCGCTGAAGAGGAACGAGTCA
TCCTCCTCCGTCCAGAATTACTTCCACCTGGACTCTCTTCAGAAGAAGCTGAAGGACCTCGAAG
AGGAGAACGTCGTACTTCGATCTGAGGCTTGTCAGCTGAAGACGGAGACCATCACCTATGAGGA
GAAGGAGCAGCAGCTGGTGAACGACTGTGTGAAGGAGCTGAGGGATGCTAACGTCCAGATTGCG
AGCATCTCTGAGGAGCTGGCCAAGAAGACGGAAGATGCCGCCCGCCAGCAGGAGGAGATCACGC
ACCTGCTGTCGCAAATCGTGGACTTGCAGAAGAAGGCGAAATCCTGTGCGGTGGAAAATGAAGA
ACTTGTCCAGCACCTGGGCGCTGCCAAGGATGCGCAGCGCCAACTCACAGCCGAGCTTCGAGAG
CTGGAGGATAAGTACGCCGAATGCATGGAGATGCTTCATGAGGCTCAGGAGGAACTGAAGAACC
TGCGGAACAAGACGATGCCCACATCCCGGCGCTACCACTCCCTGGGCCTGTTCCCCATGGACTC
CTTGGCTGCCGAAATTGAGGGAACCATGCGCAAGGAGCTGCAGCTGGAAGAGCCGGAGTCCCCA
GACATCACCCACCAGAAGCGTGTCTTTGAGACGGTGAGAAATGTCAATCAAGTGGTCAAGCAGA
GATCGCTAACCCCTTCCCCCATGAACATCCCGGGCTCCAACCAGTCTTCAGCCATGAACTCCCT
CCTGTCCAGCTGCGTCAGCACCCCCCGTTCCAGCTTCTACGGCAGCGATGTCAGCCACGTGGTC
CTCGATAACAAAACCAACAGCATCCTCCTGGAAACTGAGGCAGCCGACCTGGGGAATGAGGAGC
ACAATAAGAAGCCGGGCACACCAGGCACACCAGGCTCCCATGACCTGGAGACGGCACTTAGGCG
GCTATCCCTGCGCCGAGAGAACTACCTATCTGAGCGGAGGTTCTTCGAGGAGGAGCAGGAGAGG
AAGCTGCGAGAGCTGGCTGAGAAGGGAGAGCTGCACAGTGGCTCGCTCACGCCCACCGAGAGCA
TCATGTCCCTGGGCACACACTCACGCTTCTCCGAGTTCACGGGCTTCTCCGGCATGTCCTTCAG
CAGCCGCTCCTACCTGCCCGAGAAGCTGCAGATCGTGAAGCCACTCGAAGGTGACCACCAGGGG
CCTCGGCCCCTCTCTGTCCTCCTCTGCGACTCTCTCTGGGCCCTGATCCACCACAGGAAGGCCA
GCCACCGGTGTCCTACCTATTCATTTTTCTTTCGGGATAGCCACCCACGCTGTTGGTTTGAGTT
CCTCTGAGGCGGCCTCTGTTTCTGCAGTCTCTGTCATGGCTTGAGCAGTACACTCTTGGGCGAA
ACCTGCAGGTGGCCTGTAGGTCTCTTACTTTTGTCCTTAGTGCCTTAAGACCCAAGCCTAGTGG
CAGCCACACAGCTTCAGACCCTCCACGGTAGCTGTGTGACAACAAGCTGCTTCTGGATAACCCA
GGGGTCTGAGACGGGAGGGGAAGGAATCCGTTGGCTCCTCATAGATTTTATTGTCAAATCGAGC
ATTGTGACCCCCGCCCCAGGCATGTGGAAGTGTTGTGTGTGATCACGTGTTCCAGTCTGTTCTT
CATAGAGAGGCTTTCTGGAGGTGTGCTTTGCCGAGAGTCAGGCCCCCTGCAATCTCCAGTGTAG
AGAGGAAAGAGGGAGAGAGAGATGGAGGTCAGCCGTTCAGACTCCACTGACACCCACCCCACCC
ATAGTACTGGGAGGGGCTGCTCAGAAACTGAGTTCCTAGAAGACCTCACTGTTTCCTCTCTCCC
TCTGCCTTGTCAGGAGCACTCAGTGTGCGTTGTGTTTGTCCTGCCCCCGGTCCCCACTTTGGTT
TGAAGCCCGTGTGATTTGGAAGACCTACTTTAGAACAACGTAGTATATTTTTGATGTAAAGTCA
GACATCTGTAGGTCTGCCCTCTTCTGAGCTTTTATCCTTGGCCCTTCTCGGGAACACGGTTGAT
GCTTTAATCTAGTTGCACTCCACACTCATAACGTTTCAGTGCCACGGATAGTCTCTGTCACACA
GGAACAAACTTGCGCTCTGTGCTTAAAGAGAGCGAATAATTGTTTTCATCCCATGAGCCCCTGC
TTTTGCTGCTGTGGGGTCCGCGTCAGCCTTACCGAGCAGGCAACCTGCGTGTGCCACGGTCCCT
GCATTTCCAAAGAAAGAGGAAGGATTCTTTTCCTTCTTTCTGTTTTCATTTTAATGATTACGGT
TTGTATGTTGGTCCTTCTTCGTTTTCAGGGCAGGGAGGCTCTCTCCTTTTTATTTTGTTTATTC
AGTTGTAATCTTGGGGATTGTTTTCTGACCTGCGATTTATCTGGTTTCCTTTCAATAAAACCTT
CCATTTCTGCAATTTTA

hide sequence

RefSeq Acc Id:

XM_039081645 ⟹ XP_038937573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,443 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,046,227 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081646 ⟹ XP_038937574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,962,095 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,084,634 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081648 ⟹ XP_038937576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,956,287 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,078,764 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081650 ⟹ XP_038937578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,448 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,046,904 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081651 ⟹ XP_038937579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,861,967 - 130,016,870 (+)	NCBI
mRatBN7.2	8	120,984,445 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081652 ⟹ XP_038937580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,862,693 - 130,016,870 (+)	NCBI
mRatBN7.2	8	120,985,160 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081653 ⟹ XP_038937581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,906,333 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,028,795 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081654 ⟹ XP_038937582

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,936,298 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,058,708 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081655 ⟹ XP_038937583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,938,876 - 130,016,870 (+)	NCBI
mRatBN7.2	8	121,061,335 - 121,139,357 (+)	NCBI

RefSeq Acc Id:

XM_039081656 ⟹ XP_038937584

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,459 - 130,014,269 (+)	NCBI
mRatBN7.2	8	121,046,921 - 121,136,764 (+)	NCBI

RefSeq Acc Id:

XM_039081658 ⟹ XP_038937586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,550 - 130,014,268 (+)	NCBI
mRatBN7.2	8	121,046,929 - 121,136,757 (+)	NCBI

RefSeq Acc Id:

XM_039081659 ⟹ XP_038937587

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,568 - 130,014,267 (+)	NCBI
mRatBN7.2	8	121,046,932 - 121,136,757 (+)	NCBI

RefSeq Acc Id:

XM_063265659 ⟹ XP_063121729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,948,815 - 130,016,870 (+)	NCBI

RefSeq Acc Id:

XM_063265660 ⟹ XP_063121730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,962,099 - 130,016,870 (+)	NCBI

RefSeq Acc Id:

XM_063265661 ⟹ XP_063121731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,962,098 - 130,016,870 (+)	NCBI

RefSeq Acc Id:

XR_010053987

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,630 - 130,014,158 (+)	NCBI

RefSeq Acc Id:

XR_010053988

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	129,924,636 - 130,014,158 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128037	(Get FASTA)	NCBI Sequence Viewer
	XP_006244163	(Get FASTA)	NCBI Sequence Viewer
	XP_006244164	(Get FASTA)	NCBI Sequence Viewer
	XP_008764902	(Get FASTA)	NCBI Sequence Viewer
	XP_038937573	(Get FASTA)	NCBI Sequence Viewer
	XP_038937574	(Get FASTA)	NCBI Sequence Viewer
	XP_038937576	(Get FASTA)	NCBI Sequence Viewer
	XP_038937578	(Get FASTA)	NCBI Sequence Viewer
	XP_038937579	(Get FASTA)	NCBI Sequence Viewer
	XP_038937580	(Get FASTA)	NCBI Sequence Viewer
	XP_038937581	(Get FASTA)	NCBI Sequence Viewer
	XP_038937582	(Get FASTA)	NCBI Sequence Viewer
	XP_038937583	(Get FASTA)	NCBI Sequence Viewer
	XP_038937584	(Get FASTA)	NCBI Sequence Viewer
	XP_038937586	(Get FASTA)	NCBI Sequence Viewer
	XP_038937587	(Get FASTA)	NCBI Sequence Viewer
	XP_063121729	(Get FASTA)	NCBI Sequence Viewer
	XP_063121730	(Get FASTA)	NCBI Sequence Viewer
	XP_063121731	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76842	(Get FASTA)	NCBI Sequence Viewer
	EDL76843	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026106
	ENSRNOP00000026106.7
	ENSRNOP00000078079
	ENSRNOP00000078079.1
	ENSRNOP00000081421.2
	ENSRNOP00000088532
	ENSRNOP00000088532.2
	ENSRNOP00000092949
	ENSRNOP00000092949.1
	ENSRNOP00000099413
	ENSRNOP00000099413.1

RefSeq Acc Id:

NP_001128037 ⟸ NM_001134565

- UniProtKB:

A0A8I5ZSR6 (UniProtKB/TrEMBL), A6I434 (UniProtKB/TrEMBL), A0A8I6AI05 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALAIQLRQPSRAQPLPGLDHTLAGTNSCDVCNSTNLPEVEIISLLEEQLPHYKLRADTIYGYD
HDDWLHTPLISPDANIDLTTEQIEETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELA
ARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCST
PLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELR
DANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKSCAVENEELVQHLGAAKDAQRQ
LTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPTSRRYHSLGLFPMDSLAAEIEGTMRKELQ
LEEPESPDITHQKRVFETVRNVNQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYG
SDVSHVVLDNKTNSILLETEAADLGNEEHNKKPGTPGTPGSHDLETALRRLSLRRENYLSERRF
FEEEQERKLRELAEKGELHSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKP
LEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTGDHISLAGLA
TSTTIQHMETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPSLNSAPAPSCSSTSHLKST
PVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQSWDRAGRGSLLHSY
TPRMAVIPSTPPNSPMQTPSASPPSFEFKCTSPPYNNFLASKPASSILREVREKKHVRSSESQT
DVSVSNLNLVDKVRRFGVARVVNSGRAHIPTLTEDQGPLLCGPTGPAHALVPGGLVPEGLPLGC
PSGIRRNRSFPTMVGSSVQMRAPVILTSGILMGAKLPKQTSLR

hide sequence

RefSeq Acc Id:	XP_006244163 ⟸ XM_006244101
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AI05 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALAIQLRQPSRAQPLPGLDHTLAGTNSCDVCNSTNLPEVEIISLLEEQLPHYKLRADTIYGYD HDDWLHTPLISPDANIDLTTEQIEETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELA ARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCST PLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELR DANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKSCAVENEELVQHLGAAKDAQRQ LTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPTSRRYHSLGLFPMDSLAAEIEGTMRKELQ LEEPESPDITHQKRVFETVRNVNQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYG SDVSHVVLDNKTNSILLETEAADLGNEEHNKKPGTPGTPGSHDLETALRRLSLRRENYLSERRF FEEEQERKLRELAEKGELHSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKP LEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTAHHPGKCMSQ TNSTFTFTTCRILHPSDELTRVTPSLNSAPAPSCSSTSHLKSTPVATPCTPRRLSLAESFTNVR ESTTTMSTSLGLVWLLKERGISAAVYDPQSWDRAGRGSLLHSYTPRMAVIPSTPPNSPMQTPSA SPPSFEFKCTSPPYNNFLASKPASSILREVREKKHVRSSESQTDVSVSNLNLVDKVRRFGVARV VNSGRAHIPTLTEDQGPLLCGPTGPAHALVPGGLVPEGLPLGCPSGIRRNRSFPTMVGSSVQMR APVILTSGILMGAKLPKQTSLR hide sequence

RefSeq Acc Id:	XP_006244164 ⟸ XM_006244102
- Peptide Label:	isoform X7
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAFDLTIHGAVKSVPSSARILTMQKFTDTDYYELDWYYEECSDVLCAERVGQMTKTYNDIDAV TRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYT SAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEE KEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKSCAVENEE LVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPTSRRYHSLGLFPMDS LAAEIEGTMRKELQLEEPESPDITHQKRVFETVRNVNQVVKQRSLTPSPMNIPGSNQSSAMNSL LSSCVSTPRSSFYGSDVSHVVLDNKTNSILLETEAADLGNEEHNKKPGTPGTPGSHDLETALRR LSLRRENYLSERRFFEEEQERKLRELAEKGELHSGSLTPTESIMSLGTHSRFSEFTGFSGMSFS SRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFE EDDTGDHISLAGLATSTTIQHMETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPSLNSA PAPSCSSTSHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQ SWDRAGRGSLLHSYTPRMAVIPSTPPNSPMQTPSASPPSFEFKCTSPPYNNFLASKPASSILRE VREKKHVRSSESQTDVSVSNLNLVDKVRRFGVARVVNSGRAHIPTLTEDQGPLLCGPTGPAHAL VPGGLVPEGLPLGCPSGIRRNRSFPTMVGSSVQMRAPVILTSGILMGAKLPKQTSLR hide sequence

RefSeq Acc Id:	XP_008764902 ⟸ XM_008766680
- Peptide Label:	isoform X10
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAFDLTIHGAVKSVPSSARILTMQKFTDTDYYELDWYYEECSDVLCAERVGQMTKTYNDIDAV TRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYT SAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEE KEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKSCAVENEE LVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPTSRRYHSLGLFPMDS LAAEIEGTMRKELQLEEPESPDITHQKRVFETVRNVNQVVKQRSLTPSPMNIPGSNQSSAMNSL LSSCVSTPRSSFYGSDVSHVVLDNKTNSILLETEAADLGNEEHNKKPGTPGTPGSHDLETALRR LSLRRENYLSERRFFEEEQERKLRELAEKGELHSGSLTPTESIMSLGTHSRFSEFTGFSGMSFS SRSYLPEKLQIVKPLEGDHQGPRPLSVLLCDSLWALIHHRKASHRCPTYSFFFRDSHPRCWFEF L hide sequence

Ensembl Acc Id:

ENSRNOP00000026106 ⟸ ENSRNOT00000026106

RefSeq Acc Id:	XP_038937579 ⟸ XM_039081651
- Peptide Label:	isoform X8
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937580 ⟸ XM_039081652
- Peptide Label:	isoform X8
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937581 ⟸ XM_039081653
- Peptide Label:	isoform X8
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937573 ⟸ XM_039081645
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AI05 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937578 ⟸ XM_039081650
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AI05 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937584 ⟸ XM_039081656
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5Y2D1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937586 ⟸ XM_039081658
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I5Y2D1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937587 ⟸ XM_039081659
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5Y2D1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937582 ⟸ XM_039081654
- Peptide Label:	isoform X8
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937583 ⟸ XM_039081655
- Peptide Label:	isoform X8
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937576 ⟸ XM_039081648
- Peptide Label:	isoform X4
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937574 ⟸ XM_039081646
- Peptide Label:	isoform X2
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092949 ⟸ ENSRNOT00000101633

Ensembl Acc Id:

ENSRNOP00000081421 ⟸ ENSRNOT00000109867

Ensembl Acc Id:

ENSRNOP00000088532 ⟸ ENSRNOT00000118223

Ensembl Acc Id:

ENSRNOP00000078079 ⟸ ENSRNOT00000112022

RefSeq Acc Id:	XP_063121729 ⟸ XM_063265659
- Peptide Label:	isoform X3
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121731 ⟸ XM_063265661
- Peptide Label:	isoform X14
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121730 ⟸ XM_063265660
- Peptide Label:	isoform X9
- UniProtKB:	A6I435 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099413 ⟸ ENSRNOT00000168194

Protein Domains

HAP1 N-terminal Trafficking kinesin-binding protein C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACC5-F1-model_v2	AlphaFold	D4ACC5	1-939	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307844	AgrOrtholog
BioCyc Gene	G2FUF-28704	BioCyc
Ensembl Genes	ENSRNOG00000019262	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026106	ENTREZGENE
	ENSRNOT00000026106.7	UniProtKB/TrEMBL
	ENSRNOT00000101633	ENTREZGENE
	ENSRNOT00000101633.2	UniProtKB/TrEMBL
	ENSRNOT00000109867.2	UniProtKB/TrEMBL
	ENSRNOT00000112022	ENTREZGENE
	ENSRNOT00000112022.2	UniProtKB/TrEMBL
	ENSRNOT00000118223	ENTREZGENE
	ENSRNOT00000118223.2	UniProtKB/TrEMBL
	ENSRNOT00000168194	ENTREZGENE
	ENSRNOT00000168194.1	UniProtKB/TrEMBL
InterPro	HAP1_N	UniProtKB/TrEMBL
	Intracell_Traff-Reg	UniProtKB/TrEMBL
	Traffickng_kinesin-bd_prot_dom	UniProtKB/TrEMBL
KEGG Report	rno:316085	UniProtKB/TrEMBL
NCBI Gene	316085	ENTREZGENE
PANTHER	TRAFFICKING KINESIN-BINDING PROTEIN	UniProtKB/TrEMBL
	TRAFFICKING KINESIN-BINDING PROTEIN 1	UniProtKB/TrEMBL
Pfam	HAP1_N	UniProtKB/TrEMBL
	Milton	UniProtKB/TrEMBL
PhenoGen	Trak1	PhenoGen
RatGTEx	ENSRNOG00000019262	RatGTEx
SMART	HAP1_N	UniProtKB/TrEMBL
	Milton	UniProtKB/TrEMBL
UniProt	A0A8I5Y2D1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZSR6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A6Q8_RAT	UniProtKB/TrEMBL
	A0A8I6AI05	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L4U4_RAT	UniProtKB/TrEMBL
	A6I434	ENTREZGENE, UniProtKB/TrEMBL
	A6I435	ENTREZGENE, UniProtKB/TrEMBL
	D4ACC5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-20	Trak1	trafficking kinesin protein 1	Trak1	trafficking protein, kinesin binding 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Trak1	trafficking protein, kinesin binding 1	RGD1307844	similar to 106 kDa O-GlcNAc transferase-interacting protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1307844	similar to 106 kDa O-GlcNAc transferase-interacting protein	RGD1307844_predicted	similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307844_predicted	similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)	LOC316085_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC316085_predicted	similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations