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Gene: Kif13a (kinesin family member 13A) Rattus norvegicus

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Symbol:

Kif13a

Name:

kinesin family member 13A

RGD ID:

1307825

Description:

Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in several processes, including melanosome organization; plus-end-directed vesicle transport along microtubule; and protein transport. Predicted to be located in several cellular components, including centrosome; midbody; and trans-Golgi network membrane. Predicted to be part of kinesin complex. Predicted to be active in cytoplasm and microtubule. Orthologous to human KIF13A (kinesin family member 13A); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

kinesin-like protein KIF13A; LOC308173

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIF13A (kinesin family member 13A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Kif13a (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kif13a (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIF13A (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIF13A (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kif13a (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIF13A (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIF13A (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kif13a (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Kif13a (kinesin family member 13A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PCGF3 (polycomb group ring finger 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	KIF13A (kinesin family member 13A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Kif13a (kinesin family member 13A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kif13a (kinesin family member 13A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	klp-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	klp-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Khc-73	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Khc-73	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kif13a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	17,972,325 - 18,154,760 (+)	Ensembl				GRCr8
mRatBN7.2	17	17,766,597 - 17,948,517 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	17,766,597 - 17,943,615 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	17,652,525 - 17,834,358 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	19,256,378 - 19,438,217 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	17,579,648 - 17,761,472 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	18,151,582 - 18,335,027 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,151,982 - 18,335,019 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	19,600,209 - 19,783,264 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	23,819,084 - 24,007,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	17,476,405 - 17,657,403 (+)	NCBI		Celera
RGSC_v3.1	17	23,821,595 - 24,005,411 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

amitrole (EXP)

Ampullosporin (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

bazedoxifene (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

clobetasol (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

diuron (EXP)

dorsomorphin (ISO)

ethanol (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (ISO)

GSK-J4 (ISO)

hexadecanoic acid (ISO)

ketamine (EXP)

methoxychlor (EXP)

methylparaben (ISO)

N,N-diethyl-m-toluamide (EXP)

N-nitrosodiethylamine (ISO)

oxaliplatin (EXP)

ozone (ISO)

panobinostat (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP,ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sulforaphane (ISO)

sunitinib (ISO)

thifluzamide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endosome to lysosome transport (ISO)

Golgi to plasma membrane protein transport (ISO)

intracellular protein transport (IBA,ISO)

melanosome organization (ISO)

microtubule-based movement (IBA,IEA)

plus-end-directed vesicle transport along microtubule (ISO)

regulation of cytokinesis (ISO)

vesicle cargo loading (ISO)

vesicle transport along microtubule (IEA)

Cellular Component

centrosome (ISO)

cytoplasm (IBA)

cytoskeleton (IEA)

endosome membrane (ISO)

kinesin complex (IBA)

microtubule (IBA,IEA)

midbody (ISO)

trans-Golgi network membrane (ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IBA)

cytoskeletal motor activity (IEA)

microtubule binding (IBA,IEA)

microtubule motor activity (IBA,IEA,ISO)

nucleotide binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11106728	PMID:19841138	PMID:20208530	PMID:38446634

Genomics

Comparative Map Data

Kif13a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	17,972,325 - 18,154,760 (+)	Ensembl				GRCr8
mRatBN7.2	17	17,766,597 - 17,948,517 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	17,766,597 - 17,943,615 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	17,652,525 - 17,834,358 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	19,256,378 - 19,438,217 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	17,579,648 - 17,761,472 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	18,151,582 - 18,335,027 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,151,982 - 18,335,019 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	19,600,209 - 19,783,264 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	23,819,084 - 24,007,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	17,476,405 - 17,657,403 (+)	NCBI		Celera
RGSC_v3.1	17	23,821,595 - 24,005,411 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

KIF13A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	17,759,126 - 17,987,635 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	17,759,183 - 17,987,635 (-)	Ensembl			hg38	GRCh38
GRCh37	6	17,759,357 - 17,987,866 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	17,868,564 - 18,095,778 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	17,871,906 - 18,095,692	NCBI
Celera	6	18,998,685 - 19,225,796 (-)	NCBI		Celera
Cytogenetic Map	6	p22.3	NCBI
HuRef	6	17,704,543 - 17,932,819 (-)	NCBI		HuRef
CHM1_1	6	17,761,887 - 17,990,778 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	17,631,379 - 17,859,810 (-)	NCBI		T2T-CHM13v2.0

Kif13a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	46,902,563 - 47,083,871 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	46,902,563 - 47,083,343 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	46,749,087 - 46,929,917 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	46,749,087 - 46,929,867 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	46,844,456 - 47,025,087 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	46,760,623 - 46,940,690 (-)	NCBI		MGSCv36	mm8
Celera	13	47,832,570 - 48,014,823 (-)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	24.49	NCBI

Kif13a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	8,191,514 - 8,366,645 (+)	Ensembl
ChiLan1.0	NW_004955483	8,191,514 - 8,366,645 (+)	NCBI	ChiLan1.0	ChiLan1.0

KIF13A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	32,404,996 - 32,648,527 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	28,405,778 - 28,633,794 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	17,593,535 - 17,836,915 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	17,969,799 - 18,190,286 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	17,966,994 - 18,190,286 (-)	Ensembl			panPan2	panpan1.1

KIF13A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	16,621,581 - 16,748,500 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	16,598,425 - 16,748,485 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	16,571,667 - 16,782,824 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	16,727,962 - 16,939,451 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	16,728,067 - 16,939,397 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	16,541,634 - 16,752,769 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	16,595,542 - 16,809,657 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	17,929,298 - 18,140,774 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kif13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	8,007,900 - 8,118,832 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936552	3,613,657 - 3,722,973 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936552	3,612,104 - 3,723,275 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIF13A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	13,498,222 - 13,716,757 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	13,498,354 - 13,716,844 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	14,200,439 - 14,305,719 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIF13A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	54,156,948 - 54,389,141 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	54,156,969 - 54,390,502 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	17,949,562 - 18,215,087 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kif13a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	8,667,676 - 8,863,427 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624756	8,667,592 - 8,865,032 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kif13a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	65,733,688 - 65,918,225 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kif13a
960 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	239
Count of miRNA genes:	183
Interacting mature miRNAs:	205
Transcripts:	ENSRNOT00000066447
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9266755	40968173	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4360057	27233623	Rat
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
1582224	Epfw4	Epididymal fat weight QTL 4	3.5	0.0058	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	17	9206505	23859062	Rat
1582225	Bw67	Body weight QTL 67	6.2	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
1582226	Bw64	Body weight QTL 64	4.2	0.0017	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
1582208	Kidm32	Kidney mass QTL 32	3.9	0.0018	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	9206505	23859062	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	1	22181410	Rat
1331720	Rf43	Renal function QTL 43	2.881		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	17	15537025	28637951	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	10604694	55604694	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	1	21499218	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	8574342	32199534	Rat
1582258	Bw76	Body weight QTL 76	4.6	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat
1582199	Insul5	Insulin level QTL 5	3.4	0.0119	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	17	9206505	23859062	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4360057	27233623	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2120843	22087569	Rat
1582241	Bw70	Body weight QTL 70	4.6	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
1582245	Bw73	Body weight QTL 73	4.6	0.0004	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22877318	Rat

Markers in Region

RH142898

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	16,017,983 - 16,018,125 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	19,294,356 - 19,294,497	NCBI	Rnor6.0
Rnor_5.0	13	24,497,554 - 24,497,695	UniSTS	Rnor5.0
RGSC_v3.4	13	5,574,131 - 5,574,272	UniSTS	RGSC3.4
Celera	13	16,046,279 - 16,046,420	UniSTS
Cytogenetic Map	17	p13	UniSTS
Cytogenetic Map	13	p13	UniSTS

RH133860

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	17,913,330 - 17,913,525 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	18,299,870 - 18,300,064	NCBI	Rnor6.0
Rnor_5.0	17	19,634,898 - 19,635,092	UniSTS	Rnor5.0
RGSC_v3.4	17	23,972,110 - 23,972,304	UniSTS	RGSC3.4
Celera	17	17,622,394 - 17,622,588	UniSTS
RH 3.4 Map	17	221.7	UniSTS
Cytogenetic Map	17	p13	UniSTS

BF414013

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	17,779,414 - 17,779,648 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	18,164,797 - 18,165,030	NCBI	Rnor6.0
Rnor_5.0	17	19,769,811 - 19,770,044	UniSTS	Rnor5.0
RGSC_v3.4	17	23,831,901 - 23,832,134	UniSTS	RGSC3.4
Celera	17	17,489,220 - 17,489,453	UniSTS
RH 3.4 Map	17	195.6	UniSTS
Cytogenetic Map	17	p13	UniSTS

BG373710

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	17,880,101 - 17,880,328 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	18,266,642 - 18,266,868	NCBI	Rnor6.0
Rnor_5.0	17	19,668,094 - 19,668,320	UniSTS	Rnor5.0
RGSC_v3.4	17	23,938,882 - 23,939,108	UniSTS	RGSC3.4
Celera	17	17,588,717 - 17,588,943	UniSTS
RH 3.4 Map	17	196.7	UniSTS
Cytogenetic Map	17	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066447 ⟹ ENSRNOP00000060386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	17,972,351 - 18,154,282 (+)	Ensembl
mRatBN7.2 Ensembl	17	17,766,597 - 17,943,615 (+)	Ensembl
Rnor_6.0 Ensembl	17	18,151,982 - 18,335,019 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150235 ⟹ ENSRNOP00000102070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	17,972,325 - 18,154,282 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158825 ⟹ ENSRNOP00000104042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	18,069,100 - 18,154,282 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164569 ⟹ ENSRNOP00000099796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	17,972,853 - 18,154,760 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172992 ⟹ ENSRNOP00000106511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	17,972,853 - 18,154,760 (+)	Ensembl

RefSeq Acc Id:

NM_001107462 ⟹ NP_001100932

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,853 - 18,154,760 (+)	NCBI
mRatBN7.2	17	17,766,597 - 17,948,517 (+)	NCBI
Rnor_6.0	17	18,151,982 - 18,335,019 (+)	NCBI
Rnor_5.0	17	19,600,209 - 19,783,264 (-)	NCBI
RGSC_v3.4	17	23,819,084 - 24,007,957 (+)	RGD
Celera	17	17,476,405 - 17,657,403 (+)	RGD

Sequence:

show sequence

AGCTGGAACTGAACACCAAGTGCGTGGTGGAGATGGAAGGGAACCAGACGGTCCTGCACCCTCC
TCCTTCCAACACCAAGCAGGGAGAAAGGTGTTTGCCTTTGATTACTGCTTTTGGTCCATGGACG
AGTCGAACACGACAAAATATGCCGGTCAAGAAGTCGTTTTCAAGTGCCTCGGGGAAGGGATTCT
TGAGAAAGCCTTTCAGGGATACAATGCCTGTATTTTTGCATATGGCCAGACAGGCTCTGGAAAA
TCCTTTTCCATGATGGGCCATGCCGAGCAGCTAGGCCTGATCCCAAGGCTCTGCTGTGCTCTGT
TTCAAAGGATCTCCCTGGAGCAAAACGAGTCACAAACATTTAAAGTCGAAGTATCGTATATGGA
GATTTATAATGAGAAGGTCCGGGACCTCCTGGACCCCAAAGGGAGCAGGCAGTCTCTTAAAGTC
CGAGAACATAAGGTCTTAGGACCCTATGTCGATGGCCTATCTCAACTGGCGGTCACCAGCTTTG
AGGACATTGAGTCACTGATGTCTGAGGGAAATAAGTCTCGAACGGTAGCAGCAACCAACATGAA
TGAAGAGAGCAGCCGCTCCCATGCGGTGTTCAACATCATCATCACACAGACACTGTATGACCTA
CAGTCTGGGAACTCTGGTGAGAAAGTCAGCAAGGTGAGCCTGGTAGACCTGGCGGGCAGCGAGA
GGGTGTCGAAGACTGGAGCTGCGGGGGAGCGACTGAAAGAAGGCAGCAACATTAACAAATCACT
TACAACCTTGGGATTGGTTATATCATCGCTGGCTGACCAGGCTGCTGGCAAAGGCAAAAACAAA
TTCGTACCTTATCGAGATTCAGTCCTCACTTGGCTTCTTAAGGACAATTTAGGTGGGAACAGCC
AGACCTCTATGATAGCAACCATCAGCCCAGCAGCAGACAACTACGAGGAGACACTGTCCACGCT
AAGATACGCAGACCGAGCCAAGAGGATTGTGAACCACGCTGTCGTGAACGAGGACCCCAATGCC
AAGGTCATCCGAGAGCTGCGAGAGGAAGTGGAGAAACTGAGAGAGCAGCTCTCACAGGCTGAGG
CCATGAAGGCCCCCGAGCTGAAGGAGAAGCTGGAAGAGTCTGAGAAGCTGATAAAGGAGCTCAC
AGTGACGTGGGAAGAGAAGCTGAGGAAAACGGAAGAGATCGCACAGGAGAGGCAGCGGCAGCTG
GAGAGCATGGGGATCTCCCTGGAGACCTCTGGCATCAAGGTGGGGGATGACAAGTGCTACCTCG
TCAACCTGAATGCAGACCCTGCCCTCAACGAGCTTCTGGTTTACTATTTAAAGGATCACACGCG
GGTGGGTGCTGATACCTCTCAGGACATCCAGCTCTTTGGAATAGGGATTCAGCCCGAGCACTGT
GAGATCGACATCGCAACGGATGGAGATATCACTCTCACGCCCAAAGAAAACGCAAGGTCCTGTG
TAAATGGCACCCTGGTCTGCAGCGTGACCCAGCTGTGGCATGGTGACAGGATCTTATGGGGAAA
CAACCACTTTTTCAGAATTAACTTGCCTAAGAGGAAACGGCGGGACTGGCTGAAAGACTTTGAG
AAAGAAACCAGCGCCACGGAGCATGATCTAGACGCTGCGAGTGAGGCCTCCTCAGAACCAGACT
ACAACTACGAGTTCGCACAGATGGAGGTCATCATGAAAACACTGAACAGCAATGATCCAGTTCA
AAATGTGGTTCAGGTCCTGGAAAAGCAGTACCTGGAAGAGAAGAGGACGGCCCTGGAGGAGCAG
CGGCTCATGTATGAGCGAGAGCTAGAGCAGCTCCGTCAGCAGCTCTCTCCCGAGAGGCAGCCGC
CCAGCAGCGCCTCCGATCGCCTGGCCTACAGCAGCCAGACAGCCCAGCAGAAAGTGACCCAGTG
GGCTGAGGAGAGGGATGAACTCTTTCGGCAGAGCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAA
GCCAACACTTTGGTGAGGGAAGCCAACTTCCTGGCTGAGGAGATGGGCAAACTCACTGACTACC
AAGTGACTCTTCAGATCCCTGCGGCCAACCTCAGTGCCAACAGGAAGAGAGGAGCGATTGTCAG
TGAGCCCGCCATCCAGGCCAGGAGGAAAGGAAAGAGCACCCAGGTCTGGACCATCGAGAAGCTG
GAAAATAAGTTAATTGATATGAGAGACCTTTACCAAGAATGGAAAGAAAATGTCCCCAAGGCTA
AGAGGCTCTGTGGGAAACGAGGTGACCCTTTTTATGAAGCTCAGGAGAATCACAACCTCATCGG
TGTGGCTAACGTGTTTTTGGAATGTCTCTTCTGTGATGTGAAGCTTCAATATGCAGTACCCATT
ATCAGCCAGCAGGGGGAGGTTGCCGGGCGTCTCCACGTGGAGGTGATGCGTGTTACAGGAACTG
TTCCAGAGCGCGTGTCGGAGGATGACTCTTCCGAGAACTCCAGTGAGAGTGGGAGTCTTGAAGT
GGTGGACAGCAGCGGGGAAGTCATCCACCGGGTCAAAAAACTGACGTGCCGGGTGATAATTAAA
GAGGCAACGGGGCTACCCATAAGCCTCTCGAATTTCGTCTTCTGTCAGTACACGTTCTGGGACC
AGTATGAGTCTACAGTGGCTGCCCCGGTGGTGGACCCGGACGTGCCGTCCCCTCAGTCTAAGGA
TGCCCAGTACACAGTGACCTTCTCTCACTGTAAGGACTACGTGGTAACTGTCACAGAAGAATTC
CTAGAGTTCATTTCTGATGGCGCGCTGGCAGTTGAAGTGTGGGGCCACAGGTGTGCTGGGAACG
GAAGCCCCATCTGGGAGGTCGATTCCCTCCACGCGAAGACAAGGACATTACACGACAGGTGGAA
TGAAGTGACCCGGAGAATAGAGATGTGGATCTCCATATTGGAACTGAATGAGCTAGGAGACTAC
GCCGCAGTAGAGCTTCACCAGGCGAAGGACGTCAACACCGGCGGCGTCTTCCAACTCAGACAGG
GTCACTCCCGTAGAGTACAGGTCACAGTAAAACCTGTGCAGCATTCGGGGACGCTGCCACTCAT
GGTTGAAGCCATCCTATCAGTATCCATTGGCTGTGTGACTGCCAGATCCACCAAGCTGCAAAGA
GGGCTGGACAGTTACCAGGAGGAAGACTTGAATTGTGTAAGAGAGAGATGGTCAGATGCGCTCA
TTAAACGACGGGAATACTTAGACGAACAGATTAAAAAAGTCAGCAATAAAAAAGAGAAAACAGA
AGATGACATGGAGCGGGAAGCCAGGCTGGTGGAGCAGTGGGTGGGGCTGACGGAGGAGAGGAAT
GCTGTGCTGGTGCCTGACCCTGGCAGCGGGATCCCGGGGGCACCTGCTGACTGGGTCCCACCTC
CTGGCATGGAAACCCACATCCCCGTTCTCTTCCTGGATCTGAACGCGGATGACCTCAGTGCCAA
TGAGCAGCTGGTGGGCCCCCACGCGTCGGGAGTGAACTCCATCCTGCCCAAGGAGCATGGCAGC
CAGTTTTTCTACCTGCCCATCATAAAGCACAGTGATGACGAGGTTTCAGCCACAGCCTCCTGGG
ACTCCTCGGTGCACGACTCTCTTCACCTGAACCGGGTCACACCACAGAACGAGAGGATCTACCT
GATCGTGAAGACCACCGTTCAGCTCAGCCACCCGGCCGCCATGGAGTTAGTGTTGCGGAAGCGG
ATTGCAGCCAATATTTATAACAAGCAGAGTTTCACGCAGAGTTTAAAGAGGCGAATATCACTGA
TCAATATATGTTACTCCTGCGGCGTGACCTATGAGATAGTGTCCAATATACCAAAGGCTACCGA
GGAGATTGAGGACCGGGAGACGCTGGCCCTCCTGGCAGCTCGGAGTGAGAACGAGGGCACTTTG
GATGGGGAGACGTACATCGAGAAGTACACTCGGGGTGTGCTGCAGGTCGAGAACATCCTGAGTC
TGGAGCGGCTCCGGCAGGCCGTCACGGTGAAGGAAGCGCTCTCCACCAAAACGAGGCACATTCG
GAGAAGCCTCAGTACACCGAATGTTCACAACGTCTCCTCTAGCCGGCCAGATCTCTCTGGCTTC
GATGAAGATGATAAGGGCTGGCCCGAGAACCAGTTAGACGTGTCTGACTACAGCTCCAGTTACC
AAGATGTCGCATGCTATGGGACCTTACCCAGGGACTCGCCTCGCAGGAGCAAGGAAGGTTGCCC
ATCAGAGAATCCTCATGCCTTAACCATCAGCCCTTTTAAAGCGTTCTCTCCTCAGCCACCAAAG
TTCTTCAAACCCCTAATGCCTGTAAAAGAGGAACACAAGAAAAGAATGGCCCTGGAAGCGAGAC
CTCTCCTAAGCCAAGAGGACTCCGAAGAGGAGGAAAATGAGCTGGAAGCTGTCAGCCGGAAGCT
GATGCACGCACAGCCTTACGTGCCCGTGGAGTTTGCTGACTTCAGTGTTTACAATGCCAGCTTG
GAGAACAGGGAGTGGTCGTCTTCTAAAGCAGACCTGACAGACTCCAGAGCCTTGGAGAAAGCAG
TGTCTCGTAGCCCTACCACCAGCAGCCTCACCAGTGGCTACTTCTCCCACAGTGCCTCCAACGC
CACTCTGTCTGACATGGCAGTCCCTTCCAGCGACAGCTCAGACCAGCTAGCCCTCTCCACCAAG
GAGGCCGAGTGCCGGGAGCACTCGGGACCATCACTCGCACCCGACTTCACACCAGCTTCGACTC
AAGAGCTTACTGAAGCAGAAAGAGGCTTGGGGAAGGATAAGACAATCACCGTGCCTCTCGAGGA
GAACAGTGCCTTACCCCAGGGGAGCCCATCACCCCAGAGCATCCCCGAGGAAAATCCCAGAATG
CCGTGCAGGACTGCTTTGGGTTCAGAACTGGATGCCGGCCCCAGCAAAGAGGGCCACCAAGCCA
GAGAATTCTGCCCAGGAGAGGTGACGATAGAACACACTACGAACATTTTGGAGGACCACTCCTT
CACAGAGTTCATGGGTGTGTCCGATGGCAAAGACTTCGATGGTTTGGCAGATTGTTCCGTAGGA
GAGCCCTCCAGTAGGACGGATCTAACCATTGAAACAGGCCGTAAAGGTATCCCAGAGGGTCCCC
CAGATGCTGGCCAGCTGCATTCCAAGATAGAGAACGACCAGACGCTTCACCCGTTCTCTGAGAT
TCCATAGTGAATTCCATCTGGTCTGACCCTTCACAAAGCCCCCTGGAGGGAAACCACGGCCACT
CGGTAAGGGACAGCCATGCCTCTCTGGGCCACAGCTCCGGCAGCTTCGTCGGTCCCACCCTGGG
ACATGCTCTTCAGACAGCTGTGACCCAGCTTGACCTCAGACCAGCATGGGGGAGCCCTGCACTT
CCCCTCCCCAGTGGGAGAAGTAGCACTTTGTCCCATGGCGAATCACGGCCCCTGCTCTTTCCAG
AGAGGAAGAGAATGAAAATCTTGGCTTACCTACGTGGCAGTATTCTCATGAGCACTTCGTACAC
GCCCCACTGTGCAAAGACCTCCACAGACTCAAACGTTATTCTTGTACGTTTTTAATCAGTTCTT
CCTGCAGACTCTGGAGTCAGTGCTCTGATCCCTTTTTTATAAATAATATATATTATGTATATGA
ATTTGTGTATCTATGGTATGTCTGTTCAGAGACATATCTGCACACTAAAAGGCAGATAGATGAT
TTGTCGAAAATCACAAGGTACTGGACTTTGTTACAAAGCGACCCTGGTGACTGCTTTGACACGA
GCAGATGAAAAGCGTTATTTTATATTCTGTAAGAATGAGGTTCTAAATCCCTCTTTATAGAAAA
GGTTGCAGGCACTGTTCTTTATAACCAAAGAACTTCCAGGAGACTGAACGTCTTTGCTGTCCAC
TCTGTTCTGTGTGAGTGATGTAATCTCACTCCAGTGTGGTGCCATACTTCCCTTGGCTACCGAG
CCACGTGCTGCCCTGGTCCCTGCCCCCTTTCCTAAGCACACAGAAACCATACAGCTACAACAGT
CTTCCACCTAGCCTGGGACCTATTGACTTGACATTGACCATTGACTCGGCTGGGGCTCTGTCTT
CCCCCCTAGCATTTGTCATGTCTTGTCCACCTGTGCAAGCAGGTGGGGTGCACAGGGCAGTGTC
ACAACAGCAACGCAACAATGTACCAAGAGTTGGGGAAGAGTCTTGGTTGGTGGCTTCTTTATCA
GTCTGATTCAGAATTGCTAGATTCTCTTGTGGTGGTGGCTTGCCATTTTGCTCGACTCTAGAAA
ATGCTGAAGAGAAGGACTGAGCTATCAAGTTCGTAGGTTTACACGTCACCTTGTTTGAGGGGGA
TTAGATATGGACCGCTCCGTTGTCATTCTTTTCCCTTTTTTTTTTTTTTTCAAAGTATCCTGCG
AGGAGAGACATTGTAGGATCGTGCGTGGAAGAATTTTACAAATATATTTTATGTACTTACTCTG
TAGATGCCTGTACAATGTTGTGTTGTGAGGAAGTGAGAGAGCATGTGCAGCCTGCTGTACTTTT
TATTTTTTAAGTCCTTAGCATTGGTGAGGGAGGCCTGGGAGACTCTATTGAAAAGCTGCTGTTT
GTGTGTGTGGTGAGCTGACGGTAGTGTTTTACTATCATCCGTTGAAAACAAAAACTGTAATTTA
TATTCCCTTTCGACTTTGTATTTAATTGGTACAGATTTGTGTGTGTTTTAGAATACAAACTGTC
TAATTCAGAGTTC

hide sequence

RefSeq Acc Id:

XM_063276527 ⟹ XP_063132597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276528 ⟹ XP_063132598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276529 ⟹ XP_063132599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276530 ⟹ XP_063132600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276531 ⟹ XP_063132601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276532 ⟹ XP_063132602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276533 ⟹ XP_063132603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276534 ⟹ XP_063132604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276535 ⟹ XP_063132605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276536 ⟹ XP_063132606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276537 ⟹ XP_063132607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276538 ⟹ XP_063132608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276539 ⟹ XP_063132609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

RefSeq Acc Id:

XM_063276540 ⟹ XP_063132610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	17,972,227 - 18,154,763 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100932	(Get FASTA)	NCBI Sequence Viewer
	XP_063132597	(Get FASTA)	NCBI Sequence Viewer
	XP_063132598	(Get FASTA)	NCBI Sequence Viewer
	XP_063132599	(Get FASTA)	NCBI Sequence Viewer
	XP_063132600	(Get FASTA)	NCBI Sequence Viewer
	XP_063132601	(Get FASTA)	NCBI Sequence Viewer
	XP_063132602	(Get FASTA)	NCBI Sequence Viewer
	XP_063132603	(Get FASTA)	NCBI Sequence Viewer
	XP_063132604	(Get FASTA)	NCBI Sequence Viewer
	XP_063132605	(Get FASTA)	NCBI Sequence Viewer
	XP_063132606	(Get FASTA)	NCBI Sequence Viewer
	XP_063132607	(Get FASTA)	NCBI Sequence Viewer
	XP_063132608	(Get FASTA)	NCBI Sequence Viewer
	XP_063132609	(Get FASTA)	NCBI Sequence Viewer
	XP_063132610	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98159	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060386
	ENSRNOP00000060386.3
	ENSRNOP00000099796
	ENSRNOP00000099796.1
	ENSRNOP00000102070
	ENSRNOP00000102070.1
	ENSRNOP00000104042
	ENSRNOP00000104042.1
	ENSRNOP00000106511
	ENSRNOP00000106511.1

RefSeq Acc Id:

NP_001100932 ⟸ NM_001107462

- UniProtKB:

D3ZM20 (UniProtKB/TrEMBL), A6J709 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAYGQTGSGKSFSMMGHAEQLGLIPRLCC
ALFQRISLEQNESQTFKVEVSYMEIYNEKVRDLLDPKGSRQSLKVREHKVLGPYVDGLSQLAVT
SFEDIESLMSEGNKSRTVAATNMNEESSRSHAVFNIIITQTLYDLQSGNSGEKVSKVSLVDLAG
SERVSKTGAAGERLKEGSNINKSLTTLGLVISSLADQAAGKGKNKFVPYRDSVLTWLLKDNLGG
NSQTSMIATISPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAKVIRELREEVEKLREQLSQ
AEAMKAPELKEKLEESEKLIKELTVTWEEKLRKTEEIAQERQRQLESMGISLETSGIKVGDDKC
YLVNLNADPALNELLVYYLKDHTRVGADTSQDIQLFGIGIQPEHCEIDIATDGDITLTPKENAR
SCVNGTLVCSVTQLWHGDRILWGNNHFFRINLPKRKRRDWLKDFEKETSATEHDLDAASEASSE
PDYNYEFAQMEVIMKTLNSNDPVQNVVQVLEKQYLEEKRTALEEQRLMYERELEQLRQQLSPER
QPPSSASDRLAYSSQTAQQKVTQWAEERDELFRQSLAKLREQLVKANTLVREANFLAEEMGKLT
DYQVTLQIPAANLSANRKRGAIVSEPAIQARRKGKSTQVWTIEKLENKLIDMRDLYQEWKENVP
KAKRLCGKRGDPFYEAQENHNLIGVANVFLECLFCDVKLQYAVPIISQQGEVAGRLHVEVMRVT
GTVPERVSEDDSSENSSESGSLEVVDSSGEVIHRVKKLTCRVIIKEATGLPISLSNFVFCQYTF
WDQYESTVAAPVVDPDVPSPQSKDAQYTVTFSHCKDYVVTVTEEFLEFISDGALAVEVWGHRCA
GNGSPIWEVDSLHAKTRTLHDRWNEVTRRIEMWISILELNELGDYAAVELHQAKDVNTGGVFQL
RQGHSRRVQVTVKPVQHSGTLPLMVEAILSVSIGCVTARSTKLQRGLDSYQEEDLNCVRERWSD
ALIKRREYLDEQIKKVSNKKEKTEDDMEREARLVEQWVGLTEERNAVLVPDPGSGIPGAPADWV
PPPGMETHIPVLFLDLNADDLSANEQLVGPHASGVNSILPKEHGSQFFYLPIIKHSDDEVSATA
SWDSSVHDSLHLNRVTPQNERIYLIVKTTVQLSHPAAMELVLRKRIAANIYNKQSFTQSLKRRI
SLINICYSCGVTYEIVSNIPKATEEIEDRETLALLAARSENEGTLDGETYIEKYTRGVLQVENI
LSLERLRQAVTVKEALSTKTRHIRRSLSTPNVHNVSSSRPDLSGFDEDDKGWPENQLDVSDYSS
SYQDVACYGTLPRDSPRRSKEGCPSENPHALTISPFKAFSPQPPKFFKPLMPVKEEHKKRMALE
ARPLLSQEDSEEEENELEAVSRKLMHAQPYVPVEFADFSVYNASLENREWSSSKADLTDSRALE
KAVSRSPTTSSLTSGYFSHSASNATLSDMAVPSSDSSDQLALSTKEAECREHSGPSLAPDFTPA
STQELTEAERGLGKDKTITVPLEENSALPQGSPSPQSIPEENPRMPCRTALGSELDAGPSKEGH
QAREFCPGEVTIEHTTNILEDHSFTEFMGVSDGKDFDGLADCSVGEPSSRTDLTIETGRKGIPE
GPPDAGQLHSKIENDQTLHPFSEIP

hide sequence

Ensembl Acc Id:

ENSRNOP00000060386 ⟸ ENSRNOT00000066447

RefSeq Acc Id:	XP_063132597 ⟸ XM_063276527
- Peptide Label:	isoform X1
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132599 ⟸ XM_063276529
- Peptide Label:	isoform X3
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132601 ⟸ XM_063276531
- Peptide Label:	isoform X5
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132603 ⟸ XM_063276533
- Peptide Label:	isoform X7
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132598 ⟸ XM_063276528
- Peptide Label:	isoform X2
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132600 ⟸ XM_063276530
- Peptide Label:	isoform X4
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132606 ⟸ XM_063276536
- Peptide Label:	isoform X10
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132602 ⟸ XM_063276532
- Peptide Label:	isoform X6
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132605 ⟸ XM_063276535
- Peptide Label:	isoform X9
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132608 ⟸ XM_063276538
- Peptide Label:	isoform X12
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132604 ⟸ XM_063276534
- Peptide Label:	isoform X8
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132609 ⟸ XM_063276539
- Peptide Label:	isoform X13
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132607 ⟸ XM_063276537
- Peptide Label:	isoform X11
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132610 ⟸ XM_063276540
- Peptide Label:	isoform X14
- UniProtKB:	D3ZM20 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099796 ⟸ ENSRNOT00000164569

Ensembl Acc Id:

ENSRNOP00000104042 ⟸ ENSRNOT00000158825

Ensembl Acc Id:

ENSRNOP00000106511 ⟸ ENSRNOT00000172992

Ensembl Acc Id:

ENSRNOP00000102070 ⟸ ENSRNOT00000150235

Protein Domains

Kinesin motor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZM20-F1-model_v2	AlphaFold	D3ZM20	1-1689	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307825	AgrOrtholog
BioCyc Gene	G2FUF-9903	BioCyc
Ensembl Genes	ENSRNOG00000001455	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066447	ENTREZGENE
	ENSRNOT00000066447.3	UniProtKB/TrEMBL
	ENSRNOT00000150235	ENTREZGENE
	ENSRNOT00000150235.1	UniProtKB/TrEMBL
	ENSRNOT00000158825	ENTREZGENE
	ENSRNOT00000158825.1	UniProtKB/TrEMBL
	ENSRNOT00000164569	ENTREZGENE
	ENSRNOT00000164569.1	UniProtKB/TrEMBL
	ENSRNOT00000172992	ENTREZGENE
	ENSRNOT00000172992.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.200.20	UniProtKB/TrEMBL
	3.40.850.10	UniProtKB/TrEMBL
	6.10.250.2520	UniProtKB/TrEMBL
InterPro	FHA_dom	UniProtKB/TrEMBL
	KIF1B	UniProtKB/TrEMBL
	Kinesin-like	UniProtKB/TrEMBL
	Kinesin_assoc	UniProtKB/TrEMBL
	Kinesin_motor_CS	UniProtKB/TrEMBL
	Kinesin_motor_dom	UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SMAD_FHA_domain	UniProtKB/TrEMBL
KEGG Report	rno:308173	UniProtKB/TrEMBL
NCBI Gene	308173	ENTREZGENE
PANTHER	STAR-RELATED LIPID TRANSFER PROTEIN 9	UniProtKB/TrEMBL
Pfam	DUF3694	UniProtKB/TrEMBL
	FHA	UniProtKB/TrEMBL
	KIF1B	UniProtKB/TrEMBL
	Kinesin	UniProtKB/TrEMBL
	Kinesin_assoc	UniProtKB/TrEMBL
PhenoGen	Kif13a	PhenoGen
PRINTS	KINESINHEAVY	UniProtKB/TrEMBL
PROSITE	KINESIN_MOTOR_DOMAIN1	UniProtKB/TrEMBL
	KINESIN_MOTOR_DOMAIN2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001455	RatGTEx
SMART	KISc	UniProtKB/TrEMBL
Superfamily-SCOP	SMAD_FHA	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0ABK0KY38_RAT	UniProtKB/TrEMBL
	A0ABK0L3Y4_RAT	UniProtKB/TrEMBL
	A0ABK0L8E3_RAT	UniProtKB/TrEMBL
	A0ABK0LCV2_RAT	UniProtKB/TrEMBL
	A6J709	ENTREZGENE, UniProtKB/TrEMBL
	D3ZM20	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Kif13a	kinesin family member 13A	Kif13a_predicted	kinesin family member 13A (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Kif13a_predicted	kinesin family member 13A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar