Nup37 (nucleoporin 37) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nup37 (nucleoporin 37) Rattus norvegicus
Analyze
Symbol: Nup37
Name: nucleoporin 37
RGD ID: 1307774
Description: Predicted to be involved in several processes, including chromosome segregation; mRNA transport; and protein transport. Predicted to be located in kinetochore and nuclear envelope. Predicted to be part of nuclear pore outer ring. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 24. Orthologous to human NUP37 (nucleoporin 37); PARTICIPATES IN mRNA nuclear export pathway; RNA transport pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299706; nucleoporin Nup37
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,443,998 - 24,497,088 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl724,463,301 - 24,508,741 (+)EnsemblGRCr8
mRatBN7.2722,556,544 - 22,609,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,573,764 - 22,609,616 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx724,568,406 - 24,596,610 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0726,731,115 - 26,759,319 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,508,146 - 26,536,350 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0728,715,299 - 28,750,978 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,701,690 - 28,743,326 (+)Ensemblrn6Rnor6.0
Rnor_5.0728,825,280 - 28,860,960 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4724,847,159 - 24,875,363 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera719,736,956 - 19,765,160 (+)NCBICelera
RGSC_v3.1724,869,532 - 24,895,483 (+)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folpet  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP,ISO)
Salinomycin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulindac  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
kinetochore  (IEA,ISO)
nuclear envelope  (IEA,ISO)
nuclear pore  (IEA)
nuclear pore outer ring  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:15146057   PMID:17360435   PMID:21630459  


Genomics

Comparative Map Data
Nup37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,443,998 - 24,497,088 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl724,463,301 - 24,508,741 (+)EnsemblGRCr8
mRatBN7.2722,556,544 - 22,609,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,573,764 - 22,609,616 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx724,568,406 - 24,596,610 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0726,731,115 - 26,759,319 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,508,146 - 26,536,350 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0728,715,299 - 28,750,978 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,701,690 - 28,743,326 (+)Ensemblrn6Rnor6.0
Rnor_5.0728,825,280 - 28,860,960 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4724,847,159 - 24,875,363 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera719,736,956 - 19,765,160 (+)NCBICelera
RGSC_v3.1724,869,532 - 24,895,483 (+)NCBI
Cytogenetic Map7q13NCBI
NUP37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812102,073,103 - 102,120,114 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12102,073,103 - 102,120,120 (-)Ensemblhg38GRCh38
GRCh3712102,466,881 - 102,513,892 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,992,100 - 101,036,491 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412100,970,441 - 101,014,828NCBI
Celera12102,131,991 - 102,176,381 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,527,621 - 99,571,949 (-)NCBIHuRef
CHM1_112102,434,637 - 102,479,027 (-)NCBICHM1_1
T2T-CHM13v2.012102,034,236 - 102,081,246 (-)NCBIT2T-CHM13v2.0
Nup37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391087,982,838 - 88,014,257 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1087,982,854 - 88,014,252 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381088,146,976 - 88,178,395 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,146,992 - 88,178,390 (+)Ensemblmm10GRCm38
MGSCv371087,609,737 - 87,641,140 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361087,576,847 - 87,608,193 (+)NCBIMGSCv36mm8
Celera1090,124,078 - 90,155,478 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.7NCBI
Nup37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,258,294 - 37,297,762 (-)Ensembl
ChiLan1.0NW_00495540537,215,324 - 37,297,762 (-)NCBIChiLan1.0ChiLan1.0
NUP37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210110,147,644 - 110,193,514 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112110,144,042 - 110,189,897 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,661,779 - 99,707,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112103,059,232 - 103,105,066 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12103,059,232 - 103,105,066 (-)EnsemblpanPan2panpan1.1
NUP37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,930,321 - 40,972,092 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,930,281 - 40,972,239 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1541,298,255 - 41,340,080 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01541,584,584 - 41,626,416 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,584,592 - 41,626,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,845,180 - 40,893,509 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,947,557 - 40,989,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01541,222,195 - 41,264,018 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nup37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494518,988,532 - 19,025,943 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,000,988 - 12,036,210 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649211,998,967 - 12,036,357 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,091,517 - 82,145,528 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1582,091,439 - 82,144,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,067,263 - 86,118,880 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11197,319,980 - 97,367,237 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1197,319,853 - 97,367,207 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037147,637,099 - 147,684,349 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,163,380 - 6,203,522 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247506,163,379 - 6,202,782 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nup37
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11167,235,400 - 167,263,162 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nup37
633 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:86
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000006760
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006760   ⟹   ENSRNOP00000006760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,463,301 - 24,489,173 (+)Ensembl
mRatBN7.2 Ensembl722,573,764 - 22,601,976 (+)Ensembl
Rnor_6.0 Ensembl728,715,300 - 28,743,326 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079168   ⟹   ENSRNOP00000072699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,463,301 - 24,489,411 (+)Ensembl
mRatBN7.2 Ensembl722,573,793 - 22,601,970 (+)Ensembl
Rnor_6.0 Ensembl728,701,690 - 28,743,279 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089161   ⟹   ENSRNOP00000075343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,463,301 - 24,489,429 (+)Ensembl
mRatBN7.2 Ensembl722,573,795 - 22,601,969 (+)Ensembl
Rnor_6.0 Ensembl728,715,331 - 28,743,325 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110049   ⟹   ENSRNOP00000085983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,463,301 - 24,496,398 (+)Ensembl
mRatBN7.2 Ensembl722,575,895 - 22,609,616 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145848   ⟹   ENSRNOP00000112702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,463,301 - 24,508,741 (+)Ensembl
RefSeq Acc Id: NM_001106775   ⟹   NP_001100245
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,232 - 24,489,436 (+)NCBI
mRatBN7.2722,573,764 - 22,601,970 (+)NCBI
Rnor_6.0728,715,300 - 28,743,326 (+)NCBI
Rnor_5.0728,825,280 - 28,860,960 (+)NCBI
RGSC_v3.4724,847,159 - 24,875,363 (+)RGD
Celera719,736,956 - 19,765,160 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241197   ⟹   XP_006241259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,167 - 24,489,436 (+)NCBI
mRatBN7.2722,573,704 - 22,601,970 (+)NCBI
Rnor_6.0728,715,299 - 28,743,326 (+)NCBI
Rnor_5.0728,825,280 - 28,860,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241198   ⟹   XP_006241260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,166 - 24,497,088 (+)NCBI
mRatBN7.2722,573,704 - 22,609,622 (+)NCBI
Rnor_6.0728,715,299 - 28,750,978 (+)NCBI
Rnor_5.0728,825,280 - 28,860,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078684   ⟹   XP_038934612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,443,998 - 24,489,436 (+)NCBI
mRatBN7.2722,559,314 - 22,601,970 (+)NCBI
RefSeq Acc Id: XM_039078685   ⟹   XP_038934613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,443,998 - 24,489,436 (+)NCBI
mRatBN7.2722,556,544 - 22,601,970 (+)NCBI
RefSeq Acc Id: XM_039078686   ⟹   XP_038934614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,443,998 - 24,489,436 (+)NCBI
mRatBN7.2722,556,544 - 22,601,970 (+)NCBI
RefSeq Acc Id: XR_005486570
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,166 - 24,497,088 (+)NCBI
mRatBN7.2722,573,704 - 22,609,622 (+)NCBI
RefSeq Acc Id: NP_001100245   ⟸   NM_001106775
- UniProtKB: A6IFN4 (UniProtKB/TrEMBL),   A0A0G2K3M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241260   ⟸   XM_006241198
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GDJ4 (UniProtKB/TrEMBL),   B1WBY6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241259   ⟸   XM_006241197
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000072699   ⟸   ENSRNOT00000079168
Ensembl Acc Id: ENSRNOP00000006760   ⟸   ENSRNOT00000006760
Ensembl Acc Id: ENSRNOP00000075343   ⟸   ENSRNOT00000089161
RefSeq Acc Id: XP_038934613   ⟸   XM_039078685
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934614   ⟸   XM_039078686
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934612   ⟸   XM_039078684
- Peptide Label: isoform X1
- UniProtKB: A6IFN4 (UniProtKB/TrEMBL),   A0A0G2K3M4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085983   ⟸   ENSRNOT00000110049
Ensembl Acc Id: ENSRNOP00000112702   ⟸   ENSRNOT00000145848

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V6M8-F1-model_v2 AlphaFold G3V6M8 1-326 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695123
Promoter ID:EPDNEW_R5648
Type:initiation region
Name:Nup37_1
Description:nucleoporin 37
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0728,715,311 - 28,715,371EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307774 AgrOrtholog
BioCyc Gene G2FUF-34520 BioCyc
Ensembl Genes ENSRNOG00000004727 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006760 ENTREZGENE
  ENSRNOT00000006760.9 UniProtKB/TrEMBL
  ENSRNOT00000079168.3 UniProtKB/TrEMBL
  ENSRNOT00000089161 ENTREZGENE
  ENSRNOT00000089161.3 UniProtKB/TrEMBL
  ENSRNOT00000110049 ENTREZGENE
  ENSRNOT00000110049.2 UniProtKB/TrEMBL
  ENSRNOT00000145848.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9022830 IMAGE-MGC_LOAD
InterPro NUP37 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:299706 UniProtKB/TrEMBL
MGC_CLONE MGC:187721 IMAGE-MGC_LOAD
NCBI Gene 299706 ENTREZGENE
PANTHER NUCLEOPORIN NUP37 UniProtKB/TrEMBL
  PTHR22806 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Nup37 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004727 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2K3M4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KAC2_RAT UniProtKB/TrEMBL
  A0A8I6GDJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M922_RAT UniProtKB/TrEMBL
  A6IFN4 ENTREZGENE, UniProtKB/TrEMBL
  B1WBY6 ENTREZGENE, UniProtKB/TrEMBL
  G3V6M8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nup37  nucleoporin 37   Nup37_predicted  nucleoporin 37 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nup37_predicted  nucleoporin 37 (predicted)      Symbol and Name status set to approved 70820 APPROVED