Nup37 (nucleoporin 37) - Rat Genome Database

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Gene: Nup37 (nucleoporin 37) Rattus norvegicus
Analyze
Symbol: Nup37
Name: nucleoporin 37
RGD ID: 1307774
Description: Predicted to be located in nuclear envelope and nucleoplasm. Predicted to be part of nuclear pore outer ring. Predicted to colocalize with kinetochore. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NUP37 (nucleoporin 37); PARTICIPATES IN mRNA nuclear export pathway; RNA transport pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC299706; nucleoporin Nup37
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,443,998 - 24,497,088 (+)NCBIGRCr8
mRatBN7.2722,556,544 - 22,609,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,573,764 - 22,609,616 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx724,568,406 - 24,596,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0726,731,115 - 26,759,319 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,508,146 - 26,536,350 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0728,715,299 - 28,750,978 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,701,690 - 28,743,326 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0728,825,280 - 28,860,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4724,847,159 - 24,875,363 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1724,869,532 - 24,895,483 (+)NCBI
Celera719,736,956 - 19,765,160 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:15146057   PMID:17360435   PMID:21630459  


Genomics

Comparative Map Data
Nup37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,443,998 - 24,497,088 (+)NCBIGRCr8
mRatBN7.2722,556,544 - 22,609,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,573,764 - 22,609,616 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx724,568,406 - 24,596,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0726,731,115 - 26,759,319 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,508,146 - 26,536,350 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0728,715,299 - 28,750,978 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,701,690 - 28,743,326 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0728,825,280 - 28,860,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4724,847,159 - 24,875,363 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1724,869,532 - 24,895,483 (+)NCBI
Celera719,736,956 - 19,765,160 (+)NCBICelera
Cytogenetic Map7q13NCBI
NUP37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812102,073,103 - 102,120,114 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12102,073,103 - 102,120,120 (-)EnsemblGRCh38hg38GRCh38
GRCh3712102,466,881 - 102,513,892 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,992,100 - 101,036,491 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412100,970,441 - 101,014,828NCBI
Celera12102,131,991 - 102,176,381 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,527,621 - 99,571,949 (-)NCBIHuRef
CHM1_112102,434,637 - 102,479,027 (-)NCBICHM1_1
T2T-CHM13v2.012102,034,236 - 102,081,246 (-)NCBIT2T-CHM13v2.0
Nup37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391087,982,838 - 88,014,257 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1087,982,854 - 88,014,252 (+)EnsemblGRCm39 Ensembl
GRCm381088,146,976 - 88,178,395 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,146,992 - 88,178,390 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,609,737 - 87,641,140 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361087,576,847 - 87,608,193 (+)NCBIMGSCv36mm8
Celera1090,124,078 - 90,155,478 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.7NCBI
Nup37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,258,294 - 37,297,762 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,215,324 - 37,297,762 (-)NCBIChiLan1.0ChiLan1.0
NUP37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210110,147,644 - 110,193,514 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112110,144,042 - 110,189,897 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,661,779 - 99,707,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112103,059,232 - 103,105,066 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12103,059,232 - 103,105,066 (-)Ensemblpanpan1.1panPan2
NUP37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,930,321 - 40,972,092 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,930,281 - 40,972,239 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,298,255 - 41,340,080 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01541,584,584 - 41,626,416 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,584,592 - 41,626,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,845,180 - 40,893,509 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,947,557 - 40,989,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01541,222,195 - 41,264,018 (-)NCBIUU_Cfam_GSD_1.0
Nup37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494518,988,532 - 19,025,943 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,000,988 - 12,036,210 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649211,998,967 - 12,036,357 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,091,517 - 82,145,528 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,091,439 - 82,144,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,067,263 - 86,118,880 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11197,319,980 - 97,367,237 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1197,319,853 - 97,367,207 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037147,637,099 - 147,684,349 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,163,380 - 6,203,522 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,163,379 - 6,202,782 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup37
260 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:86
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000006760
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 20 24 18 13 18 34 20 38 6
Low 1 23 33 23 6 23 8 11 40 15 3 5 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006760   ⟹   ENSRNOP00000006760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,573,764 - 22,601,976 (+)Ensembl
Rnor_6.0 Ensembl728,715,300 - 28,743,326 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079168   ⟹   ENSRNOP00000072699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,573,793 - 22,601,970 (+)Ensembl
Rnor_6.0 Ensembl728,701,690 - 28,743,279 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089161   ⟹   ENSRNOP00000075343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,573,795 - 22,601,969 (+)Ensembl
Rnor_6.0 Ensembl728,715,331 - 28,743,325 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110049   ⟹   ENSRNOP00000085983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,575,895 - 22,609,616 (+)Ensembl
RefSeq Acc Id: NM_001106775   ⟹   NP_001100245
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,232 - 24,489,436 (+)NCBI
mRatBN7.2722,573,764 - 22,601,970 (+)NCBI
Rnor_6.0728,715,300 - 28,743,326 (+)NCBI
Rnor_5.0728,825,280 - 28,860,960 (+)NCBI
RGSC_v3.4724,847,159 - 24,875,363 (+)RGD
Celera719,736,956 - 19,765,160 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241197   ⟹   XP_006241259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,167 - 24,489,436 (+)NCBI
mRatBN7.2722,573,704 - 22,601,970 (+)NCBI
Rnor_6.0728,715,299 - 28,743,326 (+)NCBI
Rnor_5.0728,825,280 - 28,860,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241198   ⟹   XP_006241260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,166 - 24,497,088 (+)NCBI
mRatBN7.2722,573,704 - 22,609,622 (+)NCBI
Rnor_6.0728,715,299 - 28,750,978 (+)NCBI
Rnor_5.0728,825,280 - 28,860,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078684   ⟹   XP_038934612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,443,998 - 24,489,436 (+)NCBI
mRatBN7.2722,559,314 - 22,601,970 (+)NCBI
RefSeq Acc Id: XM_039078685   ⟹   XP_038934613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,443,998 - 24,489,436 (+)NCBI
mRatBN7.2722,556,544 - 22,601,970 (+)NCBI
RefSeq Acc Id: XM_039078686   ⟹   XP_038934614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,443,998 - 24,489,436 (+)NCBI
mRatBN7.2722,556,544 - 22,601,970 (+)NCBI
RefSeq Acc Id: XR_005486570
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,461,166 - 24,497,088 (+)NCBI
mRatBN7.2722,573,704 - 22,609,622 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001100245   ⟸   NM_001106775
- UniProtKB: A6IFN4 (UniProtKB/TrEMBL),   A0A0G2K3M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241260   ⟸   XM_006241198
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GDJ4 (UniProtKB/TrEMBL),   B1WBY6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241259   ⟸   XM_006241197
- Peptide Label: isoform X1
- UniProtKB: A6IFN4 (UniProtKB/TrEMBL),   A0A0G2K3M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072699   ⟸   ENSRNOT00000079168
RefSeq Acc Id: ENSRNOP00000006760   ⟸   ENSRNOT00000006760
RefSeq Acc Id: ENSRNOP00000075343   ⟸   ENSRNOT00000089161
RefSeq Acc Id: XP_038934613   ⟸   XM_039078685
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934614   ⟸   XM_039078686
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934612   ⟸   XM_039078684
- Peptide Label: isoform X1
- UniProtKB: A6IFN4 (UniProtKB/TrEMBL),   A0A0G2K3M4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085983   ⟸   ENSRNOT00000110049

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V6M8-F1-model_v2 AlphaFold G3V6M8 1-326 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695123
Promoter ID:EPDNEW_R5648
Type:initiation region
Name:Nup37_1
Description:nucleoporin 37
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0728,715,311 - 28,715,371EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307774 AgrOrtholog
BioCyc Gene G2FUF-34520 BioCyc
Ensembl Genes ENSRNOG00000004727 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006760.8 UniProtKB/TrEMBL
  ENSRNOT00000079168.2 UniProtKB/TrEMBL
  ENSRNOT00000089161.2 UniProtKB/TrEMBL
  ENSRNOT00000110049.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9022830 IMAGE-MGC_LOAD
InterPro NUP37 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:299706 UniProtKB/TrEMBL
MGC_CLONE MGC:187721 IMAGE-MGC_LOAD
NCBI Gene 299706 ENTREZGENE
PANTHER NUCLEOPORIN NUP37 UniProtKB/TrEMBL
  PTHR22806 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Nup37 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004727 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2K3M4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GDJ4 ENTREZGENE, UniProtKB/TrEMBL
  A6IFN4 ENTREZGENE, UniProtKB/TrEMBL
  B1WBY6 ENTREZGENE, UniProtKB/TrEMBL
  G3V6M8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nup37  nucleoporin 37   Nup37_predicted  nucleoporin 37 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nup37_predicted  nucleoporin 37 (predicted)      Symbol and Name status set to approved 70820 APPROVED