Ripor1 (RHO family interacting cell polarization regulator 1) - Rat Genome Database

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Gene: Ripor1 (RHO family interacting cell polarization regulator 1) Rattus norvegicus
Analyze
Symbol: Ripor1
Name: RHO family interacting cell polarization regulator 1
RGD ID: 1307772
Description: Predicted to enable 14-3-3 protein binding activity. Predicted to be involved in several processes, including establishment of Golgi localization; negative regulation of Rho guanyl-nucleotide exchange factor activity; and negative regulation of Rho protein signal transduction. Predicted to be located in Golgi apparatus; cell leading edge; and membrane. Predicted to be active in cytoplasm. Orthologous to human RIPOR1 (RHO family interacting cell polarization regulator 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam65a; family with sequence similarity 65, member A; hypothetical protein LOC291974; LOC291974; RGD1307772; rho family-interacting cell polarization regulator 1; similar to mKIAA1930 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,387,447 - 50,416,323 (+)NCBIGRCr8
mRatBN7.21933,477,750 - 33,506,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,477,793 - 33,506,420 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,305,282 - 40,322,008 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,958,612 - 40,975,338 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,256,325 - 43,273,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,555,940 - 37,584,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,568,113 - 37,587,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,424,412 - 48,452,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,438,485 - 35,446,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,443,365 - 35,451,436 (+)NCBI
Celera1932,917,984 - 32,934,712 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell leading edge  (ISO)
cytoplasm  (IBA,ISO,ISS)
Golgi apparatus  (IEA,ISO,ISS)
membrane  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:17251388   PMID:19056867   PMID:19199708   PMID:23376485   PMID:25588844   PMID:27807006  


Genomics

Comparative Map Data
Ripor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,387,447 - 50,416,323 (+)NCBIGRCr8
mRatBN7.21933,477,750 - 33,506,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,477,793 - 33,506,420 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,305,282 - 40,322,008 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,958,612 - 40,975,338 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,256,325 - 43,273,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,555,940 - 37,584,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,568,113 - 37,587,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,424,412 - 48,452,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,438,485 - 35,446,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,443,365 - 35,451,436 (+)NCBI
Celera1932,917,984 - 32,934,712 (+)NCBICelera
Cytogenetic Map19q12NCBI
RIPOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,518,369 - 67,546,786 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,518,418 - 67,546,788 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,562,732 - 67,580,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,120,255 - 66,138,190 (+)NCBINCBI36Build 36hg18NCBI36
Celera1652,070,951 - 52,088,932 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,436,809 - 53,453,959 (+)NCBIHuRef
CHM1_11668,970,079 - 68,988,035 (+)NCBICHM1_1
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBIT2T-CHM13v2.0
Ripor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,320,588 - 106,348,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,331,887 - 106,348,851 (+)EnsemblGRCm39 Ensembl
GRCm388105,594,087 - 105,622,219 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,605,255 - 105,622,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,129,129 - 108,146,119 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,483,080 - 108,518,110 (+)NCBIMGSCv36mm8
Celera8109,828,802 - 109,846,503 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Ripor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,110,557 - 9,119,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,110,208 - 9,119,678 (-)NCBIChiLan1.0ChiLan1.0
RIPOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,057,019 - 77,075,026 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,969,653 - 82,987,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,872,769 - 47,890,776 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,250,502 - 67,278,768 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,268,180 - 67,278,445 (+)Ensemblpanpan1.1panPan2
RIPOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,879,359 - 81,888,613 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,879,652 - 81,887,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,869,022 - 81,892,886 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,314,594 - 82,338,472 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,314,609 - 82,338,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,140,793 - 82,164,649 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,821,921 - 81,845,721 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,464,908 - 82,488,823 (-)NCBIUU_Cfam_GSD_1.0
Ripor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,621,085 - 41,636,855 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,952,092 - 17,971,085 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,952,297 - 17,968,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIPOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,132,115 - 28,183,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,156,508 - 28,183,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,431,697 - 25,448,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIPOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,905,713 - 59,923,573 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,904,589 - 59,914,908 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,655,906 - 22,683,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ripor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,772,930 - 18,792,217 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,773,092 - 18,792,182 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ripor1
73 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:133
Interacting mature miRNAs:143
Transcripts:ENSRNOT00000023710
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat

Markers in Region
RH132883  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,485,218 - 33,485,435 (+)MAPPERmRatBN7.2
Rnor_6.01937,563,635 - 37,563,851NCBIRnor6.0
Rnor_5.01948,431,528 - 48,431,744UniSTSRnor5.0
RGSC_v3.41935,425,207 - 35,425,423UniSTSRGSC3.4
Celera1932,913,525 - 32,913,741UniSTS
RH 3.4 Map19332.3UniSTS
Cytogenetic Map19q11UniSTS
BE107893  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,477,764 - 33,477,938 (+)MAPPERmRatBN7.2
Rnor_6.01937,556,181 - 37,556,354NCBIRnor6.0
Rnor_5.01948,424,630 - 48,424,803UniSTSRnor5.0
RGSC_v3.41935,417,753 - 35,417,926UniSTSRGSC3.4
Celera1932,906,071 - 32,906,244UniSTS
RH 3.4 Map19358.81UniSTS
Cytogenetic Map19q11UniSTS
AW520830  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,498,792 - 33,499,092 (+)MAPPERmRatBN7.2
Rnor_6.01937,577,211 - 37,577,510NCBIRnor6.0
Rnor_5.01948,445,080 - 48,445,379UniSTSRnor5.0
RGSC_v3.41935,438,924 - 35,439,223UniSTSRGSC3.4
Celera1932,927,081 - 32,927,380UniSTS
RH 3.4 Map19272.9UniSTS
Cytogenetic Map19q11UniSTS
BF390465  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,501,493 - 33,501,670 (+)MAPPERmRatBN7.2
Rnor_6.01937,579,912 - 37,580,088NCBIRnor6.0
Rnor_5.01948,447,781 - 48,447,957UniSTSRnor5.0
RGSC_v3.41935,441,625 - 35,441,801UniSTSRGSC3.4
Celera1932,929,782 - 32,929,958UniSTS
RH 3.4 Map19364.02UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY724537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF524907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ147070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023710   ⟹   ENSRNOP00000023710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,477,793 - 33,506,371 (+)Ensembl
Rnor_6.0 Ensembl1937,568,113 - 37,584,838 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089022   ⟹   ENSRNOP00000069592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,478,903 - 33,506,398 (+)Ensembl
Rnor_6.0 Ensembl1937,576,075 - 37,587,294 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116738   ⟹   ENSRNOP00000096363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,495,050 - 33,506,420 (+)Ensembl
RefSeq Acc Id: NM_001100660   ⟹   NP_001094130
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,399,599 - 50,416,323 (+)NCBI
mRatBN7.21933,489,699 - 33,506,424 (+)NCBI
Rnor_6.01937,568,113 - 37,584,842 (+)NCBI
Rnor_5.01948,424,412 - 48,452,711 (+)NCBI
Celera1932,917,984 - 32,934,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255474   ⟹   XP_006255536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,400,868 - 50,416,321 (+)NCBI
mRatBN7.21933,497,856 - 33,506,424 (+)NCBI
Rnor_6.01937,575,815 - 37,584,842 (+)NCBI
Rnor_5.01948,424,412 - 48,452,711 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063277921   ⟹   XP_063133991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,400,865 - 50,416,321 (+)NCBI
RefSeq Acc Id: XM_063277922   ⟹   XP_063133992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,387,447 - 50,416,321 (+)NCBI
RefSeq Acc Id: XM_063277923   ⟹   XP_063133993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,400,866 - 50,416,321 (+)NCBI
RefSeq Acc Id: XM_063277924   ⟹   XP_063133994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,399,546 - 50,416,321 (+)NCBI
RefSeq Acc Id: NP_001094130   ⟸   NM_001100660
- UniProtKB: Q4FZU8 (UniProtKB/Swiss-Prot),   A6IYQ8 (UniProtKB/TrEMBL),   A0A0G2JVR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255536   ⟸   XM_006255474
- Peptide Label: isoform X2
- UniProtKB: A0A8I6B430 (UniProtKB/TrEMBL),   A0A0G2JVR9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069592   ⟸   ENSRNOT00000089022
Ensembl Acc Id: ENSRNOP00000023710   ⟸   ENSRNOT00000023710
Ensembl Acc Id: ENSRNOP00000096363   ⟸   ENSRNOT00000116738
RefSeq Acc Id: XP_063133992   ⟸   XM_063277922
- Peptide Label: isoform X3
- UniProtKB: A6IYQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133994   ⟸   XM_063277924
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063133991   ⟸   XM_063277921
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133993   ⟸   XM_063277923
- Peptide Label: isoform X4
Protein Domains
FAM65 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4FZU8-F1-model_v2 AlphaFold Q4FZU8 1-1217 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701080
Promoter ID:EPDNEW_R11604
Type:initiation region
Name:Ripor1_1
Description:RHO family interacting cell polarization regulator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,568,143 - 37,568,203EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307772 AgrOrtholog
BioCyc Gene G2FUF-5822 BioCyc
Ensembl Genes ENSRNOG00000017604 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019210 UniProtKB/Swiss-Prot
  ENSRNOG00060011194 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023710.7 UniProtKB/Swiss-Prot
  ENSRNOT00000089022.2 UniProtKB/TrEMBL
  ENSRNOT00000116738.1 UniProtKB/TrEMBL
  ENSRNOT00055032880 UniProtKB/Swiss-Prot
  ENSRNOT00060018958 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7459580 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAM65_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIPOR3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291974 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:116235 IMAGE-MGC_LOAD
NCBI Gene 291974 ENTREZGENE
PANTHER PTHR15829 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO FAMILY-INTERACTING CELL POLARIZATION REGULATOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PL48 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ripor1 PhenoGen
RatGTEx ENSRNOG00000017604 RatGTEx
  ENSRNOG00055019210 RatGTEx
  ENSRNOG00060011194 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JVR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B430 ENTREZGENE, UniProtKB/TrEMBL
  A6IYQ6 ENTREZGENE, UniProtKB/TrEMBL
  A6IYQ8 ENTREZGENE, UniProtKB/TrEMBL
  Q4FZU8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 Ripor1  RHO family interacting cell polarization regulator 1  Fam65a  family with sequence similarity 65, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam65a  family with sequence similarity 65, member A  RGD1307772  similar to mKIAA1930 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307772  similar to mKIAA1930 protein  RGD1307772_predicted  similar to mKIAA1930 protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307772_predicted  similar to mKIAA1930 protein (predicted)  LOC291974_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291974_predicted  similar to mKIAA1930 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL