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Gene: Ripor1 (RHO family interacting cell polarization regulator 1) Rattus norvegicus

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Symbol:

Ripor1

Name:

RHO family interacting cell polarization regulator 1

RGD ID:

1307772

Description:

Predicted to enable 14-3-3 protein binding activity. Predicted to be involved in several processes, including Rho protein signal transduction; establishment of Golgi localization; and negative regulation of Rho protein signal transduction. Predicted to be located in Golgi apparatus; cell leading edge; and membrane. Predicted to be active in cytoplasm. Orthologous to human RIPOR1 (RHO family interacting cell polarization regulator 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fam65a; family with sequence similarity 65, member A; hypothetical protein LOC291974; LOC291974; RGD1307772; rho family-interacting cell polarization regulator 1; similar to mKIAA1930 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,387,447 - 50,416,323 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	50,387,523 - 50,416,319 (+)	Ensembl				GRCr8
mRatBN7.2	19	33,477,750 - 33,506,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,477,793 - 33,506,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	40,305,282 - 40,322,008 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,958,612 - 40,975,338 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,256,325 - 43,273,034 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,555,940 - 37,584,842 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,568,113 - 37,587,294 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	48,424,412 - 48,452,711 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	35,438,485 - 35,446,556 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	32,917,984 - 32,934,712 (+)	NCBI		Celera
RGSC_v3.1	19	35,443,365 - 35,451,436 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dicrotophos (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethylparaben (ISO)

FR900359 (ISO)

lead diacetate (ISO)

leflunomide (ISO)

methapyrilene (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

propiconazole (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to chemokine (ISO)

cellular response to starvation (ISO,ISS)

establishment of Golgi localization (ISO,ISS)

negative regulation of Rho guanyl-nucleotide exchange factor activity (ISO)

negative regulation of Rho protein signal transduction (ISO)

positive regulation of cell migration (ISO,ISS)

positive regulation of intracellular protein transport (ISO,ISS)

protein localization to Golgi apparatus (ISO,ISS)

response to wounding (ISO,ISS)

Rho protein signal transduction (ISO,ISS)

Cellular Component

cell leading edge (ISO)

cytoplasm (IBA,IEA,ISO,ISS)

cytosol (ISO)

Golgi apparatus (IEA,ISO,ISS)

membrane (ISO,ISS)

Molecular Function

14-3-3 protein binding (ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:17251388	PMID:19056867	PMID:19199708	PMID:23376485	PMID:25588844	PMID:27807006

Genomics

Comparative Map Data

Ripor1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,387,447 - 50,416,323 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	50,387,523 - 50,416,319 (+)	Ensembl				GRCr8
mRatBN7.2	19	33,477,750 - 33,506,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,477,793 - 33,506,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	40,305,282 - 40,322,008 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,958,612 - 40,975,338 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,256,325 - 43,273,034 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,555,940 - 37,584,842 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,568,113 - 37,587,294 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	48,424,412 - 48,452,711 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	35,438,485 - 35,446,556 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	32,917,984 - 32,934,712 (+)	NCBI		Celera
RGSC_v3.1	19	35,443,365 - 35,451,436 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

RIPOR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,518,369 - 67,546,786 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	67,518,418 - 67,546,788 (+)	Ensembl			hg38	GRCh38
GRCh37	16	67,562,732 - 67,580,689 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	66,120,255 - 66,138,190 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	52,070,951 - 52,088,932 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,436,809 - 53,453,959 (+)	NCBI		HuRef
CHM1_1	16	68,970,079 - 68,988,035 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	73,323,597 - 73,341,553 (+)	NCBI		T2T-CHM13v2.0

Ripor1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,320,588 - 106,348,851 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,331,887 - 106,348,851 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	105,594,087 - 105,622,219 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,605,255 - 105,622,219 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	108,129,129 - 108,146,119 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,483,080 - 108,518,110 (+)	NCBI		MGSCv36	mm8
Celera	8	109,828,802 - 109,846,503 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.04	NCBI

Ripor1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	9,110,557 - 9,119,510 (-)	Ensembl
ChiLan1.0	NW_004955484	9,110,208 - 9,119,678 (-)	NCBI	ChiLan1.0	ChiLan1.0

RIPOR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	77,057,019 - 77,075,026 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	82,969,653 - 82,987,662 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	47,872,769 - 47,890,776 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	67,250,502 - 67,278,768 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,268,180 - 67,278,445 (+)	Ensembl			panPan2	panpan1.1

RIPOR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,879,359 - 81,888,613 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,879,652 - 81,887,650 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,869,022 - 81,892,886 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,314,594 - 82,338,472 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,314,609 - 82,338,718 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	82,140,793 - 82,164,649 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	81,821,921 - 81,845,721 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,464,908 - 82,488,823 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ripor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,621,085 - 41,636,855 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	17,952,092 - 17,971,085 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	17,952,297 - 17,968,029 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIPOR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,132,115 - 28,183,780 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	28,156,508 - 28,183,640 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	25,431,697 - 25,448,249 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIPOR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,905,713 - 59,923,573 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	59,904,589 - 59,914,908 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	22,655,906 - 22,683,941 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ripor1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	18,772,930 - 18,792,217 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	18,773,092 - 18,792,182 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ripor1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	25,337,062 - 25,353,563 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ripor1
236 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	175
Count of miRNA genes:	133
Interacting mature miRNAs:	143
Transcripts:	ENSRNOT00000023710
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat

Markers in Region

RH132883

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,485,218 - 33,485,435 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,563,635 - 37,563,851	NCBI	Rnor6.0
Rnor_5.0	19	48,431,528 - 48,431,744	UniSTS	Rnor5.0
RGSC_v3.4	19	35,425,207 - 35,425,423	UniSTS	RGSC3.4
Celera	19	32,913,525 - 32,913,741	UniSTS
RH 3.4 Map	19	332.3	UniSTS
Cytogenetic Map	19	q11	UniSTS

BE107893

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,477,764 - 33,477,938 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,556,181 - 37,556,354	NCBI	Rnor6.0
Rnor_5.0	19	48,424,630 - 48,424,803	UniSTS	Rnor5.0
RGSC_v3.4	19	35,417,753 - 35,417,926	UniSTS	RGSC3.4
Celera	19	32,906,071 - 32,906,244	UniSTS
RH 3.4 Map	19	358.81	UniSTS
Cytogenetic Map	19	q11	UniSTS

AW520830

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	50,408,691 - 50,408,991 (+)	Marker Load Pipeline
mRatBN7.2	19	33,498,792 - 33,499,092 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,577,211 - 37,577,510	NCBI	Rnor6.0
Rnor_5.0	19	48,445,080 - 48,445,379	UniSTS	Rnor5.0
RGSC_v3.4	19	35,438,924 - 35,439,223	UniSTS	RGSC3.4
Celera	19	32,927,081 - 32,927,380	UniSTS
RH 3.4 Map	19	272.9	UniSTS
Cytogenetic Map	19	q11	UniSTS

BF390465

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,501,493 - 33,501,670 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,579,912 - 37,580,088	NCBI	Rnor6.0
Rnor_5.0	19	48,447,781 - 48,447,957	UniSTS	Rnor5.0
RGSC_v3.4	19	35,441,625 - 35,441,801	UniSTS	RGSC3.4
Celera	19	32,929,782 - 32,929,958	UniSTS
RH 3.4 Map	19	364.02	UniSTS
Cytogenetic Map	19	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY724537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF524907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ147070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023710 ⟹ ENSRNOP00000023710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,387,523 - 50,416,280 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,477,793 - 33,506,371 (+)	Ensembl
Rnor_6.0 Ensembl	19	37,568,113 - 37,584,838 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089022 ⟹ ENSRNOP00000069592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,407,651 - 50,416,319 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,478,903 - 33,506,398 (+)	Ensembl
Rnor_6.0 Ensembl	19	37,576,075 - 37,587,294 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116738 ⟹ ENSRNOP00000096363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,399,615 - 50,416,285 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,495,050 - 33,506,420 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139880 ⟹ ENSRNOP00000102696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,388,977 - 50,415,852 (+)	Ensembl

RefSeq Acc Id:

NM_001100660 ⟹ NP_001094130

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,399,599 - 50,416,323 (+)	NCBI
mRatBN7.2	19	33,489,699 - 33,506,424 (+)	NCBI
Rnor_6.0	19	37,568,113 - 37,584,842 (+)	NCBI
Rnor_5.0	19	48,424,412 - 48,452,711 (+)	NCBI
Celera	19	32,917,984 - 32,934,712 (+)	NCBI

Sequence:

show sequence

GGGGCTGGCGCCGGCCGCGGCGACAGCGGCAGCTGCAGCGCGAGCAGGCCCGGCAACGCCGAGA
GTACCGACAGCGCGAGGTCCTTGCAGCCCAGCGCAGCCATGGAGCCCCGCGCGAACTCATTCCA
TGATGTCCCTGTCGGTGCGGCCGCAGCGCCGCCTGCTCAGCGCCCGGGTCAGTAGGAGCCAGTC
CTTCGCAGGCGTCCTCGGCAGCCAAGAGCGCGGGCCCAGGAACTTCACGGTCTTCAGCCCACCA
GGGCCTCAACGGAAGCCTTTAGTGCTCTCCCGAGTGTCAAGGATGTTTTCTGTGGCCCACCCAG
CCCCCAAGGTGCCACAGCCTGAGAGGCTGGACCTGGTATATGCTGCTCTTAAGCGGGGACTGAC
GGCCTACTTGGAAGTGCATCAGCAAGAGCAGGAGAAGCTCCAGCGCCAGATAAAGGAGTCCAAG
AGGAATTCCCGCCTAGGATTCCTGTATGACTTGGATAAGCAAGTCAAGTCCATTGAACGTTTTC
TTCGACGACTGGAATTCCATGCCAGTAAGATTGATGAGCTGTATGAAGCATACTGTGTCCAGCG
GCGTCTCAGGGATGGTGCCTACAACATGGTTCGTGCTTATAGCACTGGGTCCCCAGGGAGTCGA
GAGGCCCGAGACAGCCTGGCTGAGGCCACCCGAGGCCATCGAGAGTATACAGAGAGCATGTGTC
TTCTGGAGAATGAGCTGGAGGCACAGCTGGGCGAGTTTCATCTCCGGATGAAAGGGTTGGCTGG
GTTCGCCAGGCTGTGTGTGGGCGATCAATATGAGATCTGCATGAAATACGGCCGCCAGCGCTGG
AAGTTACGAGGCCGAATAGAGAGTAGTGGAAAGCAAGTGTGGGACAGTGAAGAGACTGTCTTTC
TTCCTCTGCTCACAGAATTCCTGTCTATCAAGGTGACAGAATTAAAAGGACTGGCTAACCATGT
AGTCGTGGGCAGTGTCTCCTGTGAGACCAAGGACCTGTTTGCCGCCCTGCCCCAGGTTGTGGCT
GTGGATATCAATGATCTCGGCACTATCAAGCTCAGCCTAGAAGTCATATGGAGTCCCTTTGACA
AGGATGACCAGCCTTCAGCTGCTTCTACAGTCAACAAAGCTTCCACAGTCACCAAGCGGTTTTC
CACATATAGCCAGAGTCCACCAGATACACCCTCACTTCGGGAGCAGGCTTTTTATAACATGTTA
CGGCGGCAGGAGGAGTTAGAGAATGGGACAGCATGGTCCCTGTCATCCGAATCTTCTGATGATT
CATCCAGCCCGCAGCTCTCAGGCACTGCTCGATACTCATCAACTCCCAAGCCTCTGGTGCAACA
GCCTGAGCCCCTGCCTGTCCAAGTTACCTTCCGAAGGCCAGAGAGCCTCTCCTCTGGTTCCATG
GATGAAGAGCCACCTCTGACCCCAGCCCTGGTCAATGGGCATGCCCCTTACAGTCGGACTCTCA
GCCACATCAGTGAAGCCAGCGTGGATGCTGCCTTGACTGAGGCCATGGAAGCTGTGGACTTAAA
ATGCCCAGCCCCAGGGCCTAGCCCACTTGTATATCCAGAGTCCACCCATGTGGAGCATGTCAGT
AGTGTTCCTCCTGTTGCAGACAATGGCCGTTCTGCCACAAGTCCTGCCCTAAGTACAGCTGGCC
CTGCCCCCACATTTATAGACCCTGCCTCATCTACACAGCTAGACTTAGTTCACAAAGCCACAGA
CTCTGGCTCTTCTGAGTTGCCAAGCATCACACATACTATGGCAAGCTCTACATATAGTGCTGTG
AGCCCGATCAACAGTGTTCCAGGCCTAACTTCCACCACTGTAGGTTCTACCCACAAACCCATGC
CCTCTCCCCTCACCTCTACAGGCTCTATCCCCAGTGTCACAGACTCAATCCAGACTACCACAAG
CCCAACTCACACCACCCCAAGCCCTACCCACACTACTGTAAGCCCTACACATAGCACTCCAAGT
CCCACCCATACCACTGTAAGTCCCAGCAATGCTGCTCTAAGCCCCAGCAATGCTACTCCAAGCC
TCAGCCACAGTACCACTAGTCCTACTCAAAAAGCCACGATGTCAACTCATACCACTAGTGCTGT
GGGCCCAGTCCAGACCACTACAAGTCCCATTTCTACAACTGTAAGCCCCTCCCCTTCTGTAGAC
ACTGCTATAATCTCCAGTTCCTCTGCAGTACCCTCTGTCCCAGGCCCTGAAGCACGGCCTTGTA
GTCACCCAACCTCTACTCCCTACACTAAAGCAGACCCCACAGCAGCCTGCACCTCTTCTCCGAG
TCTTGCTTCCTCTGGTCCAAAACCCCTCACAAGCCCTGCCCCAGACTCGCTAGAACAAATCCTT
AAGAGCCCAAGTTCCTCTCCGTCATCCATAGTCCCTGAACCCCAACGTTCAGAACTTAGCCTGG
CCTTGGTTGCTCAAGCCCCAGTCCCTGAAGCCACTGGAGGAGCTGGGGACAGAAGGCTCGAAGA
GGCTCTCAGGACCCTAATGGCTGCCCTGGATGATTATCGAGGTCAGTTCCCTGAGCTCCAGGGC
CTGGAGCAGGAGGTGACTCGGCTGGAGAGTCTGCTCATGCAGAGGCAAGGCCTGACTCGAAGCC
GGGCCTCCAGTCTTAGCATCACCGTGGAGCATGCCCTGGAGAGCTTCAGCTTCCTCAATGATGA
TGAAGATGAAGACAATGACAGTCCTGGGGACAGGCCCACAAGCAGCCCAGAGGTTGTGGCTGAG
GAAAGACTAGACTCATCAAATGCCCAGTGTCTAAGCACAGGGTGTTCAGCCCTGGATGCTACCT
TGGTCCAGCACCTGTACCACTGCAGCTGCCTCCTGCTGAAACTGGGCACATTTGGGCCCCTGCG
CTGCCAGGAGGCATGGGCCCTGGAACGGCTGCTGAGGGAAGCTCGAGTGCTCCAGGAAGTGTGT
GAGCACAGCAAGCTGTGGGGAAATGCTGTCACATCTGCCCAGGAAGTGGTACAGTTCTCTGCCT
CTCGGCCCGGTTTCCTGACCTTTTGGGACCAGTGTACAGAGGGACTCAACCCCTTCCTCTGCCC
TGTGGAGCAGGTGCTCCTCACTTTCTGCAGCCAGTATGGTGCCCGTCTTTCCCTGCGCCAGCCA
GGCTTAGCCGAGGCTGTGTGTGTGAAGTTCCTGGAAGATGCTCTGGGGCAGAAGCTGCCCAGGA
GGCCCCACTCAGGCCCCGGGGAGCAGCTCACCATCTTCCAATTCTGGAGTTATGTAGAAGTCTT
GGACAGCCCCTCCATGGAAGCCTATGTGACAGAGACCGCAGAGGAGGTGTTACTGGTACAGAAC
CTGAACTCCGATGACCAGGCAGTTGTGCTGAAGGCTCTAAGGTTAGCCCCAGAGGGGCGCCTGA
GGAAGGATGGGCTTCGGGCTCTTAGCTCCCTGCTGGTCCACGGCAATAGCAAAGTCATGGCTGC
TGTCAGCACCCAGCTTCGGAGCCTGTCACTTGGTCCTGTCTTCCGGGAAAGGGCTCTTCTGTGC
TTCCTGGACCAGCTTGAGGATGAGGATGTGCAGACTCGAGTGGCCGGGTGCCTGGCTTTGGGCT
GTATCAAGGCTCCTGAGGGCATTGAGCCCCTGGTGTACTTGTGTCAAACAGACACAGAAGCTGT
GAGGGAAGCTGCCCGGCAGAGCCTCCAGCAGTGTGGGGAAGAAGGACAGTCTGCTCATCGCCAG
CTAGAGGAGTCCCTGGATGCCCTGCCCTGCCTCTTTGGGCCCAGCAGCATGGCCAGCACAGCAT
TCTGAACTCTGATTGCCAGCTCCCAGTGCTCCTTCCCTCATTTTCAGGGCTCACTAGGCACTGG
CAGGGAGGGTGAGGGCTGGTTCCAGTCACCTCTCCCCACAAATTCCTATCAATGAAAATCTAAT
ATATTCTTCTGTTATCACTGGGGTTGGTAGAATGCCTGAAATGAAGTGCCTCCCAGCCGGTTCT
GCATAGCCACAAACAGTGTCAGGGGCCTGACCGTTTGGTCAGCTTGCTCTGCCTCACCACATCC
CTTGGTTTTGTATTTTATTTACAGAGTTTTACAGATAATAAAAAAGCAAAATGTGTTTCCTACG
TGGCTTGGTGCACGCCCGAGCCTCTGCTCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_006255474 ⟹ XP_006255536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,400,868 - 50,416,321 (+)	NCBI
mRatBN7.2	19	33,497,856 - 33,506,424 (+)	NCBI
Rnor_6.0	19	37,575,815 - 37,584,842 (+)	NCBI
Rnor_5.0	19	48,424,412 - 48,452,711 (+)	NCBI

Sequence:

show sequence

CTGGGAATTGAACCTGGGATCCTCTGGAAGAGAAGCCAGCACTCTTAACCGCTGGGCCATCTCT
CCAGTCTCTTGGACACCTTTCTATTACAGTCTCCCATAGTTCTCTTCATTTTGTCCTTCCATAT
TTATTCTGGTGTTCAACTCCCTTCACTGGCGTCCCTAGCCACAAACCCTGTGTCGGCCCATTAC
GGAGGGAAGTCCCTAGTAACCCCTTGCAGAGGCTAAGGAGACTGAGGTTCGGCGCCCCCCCTAG
TCCGGGAGACCAGTCCCGCCCCATCCCGGCGGGCTGAGTCAGGAGGCAGGAACTGGGCGGGCGG
GAGGCGTCGAGAGCAGCCAGAAACCTGGGCCAGAGCCGCTGGCAGTGAGCTTGGAGCCCAACTG
GGCTGGTACCAAAAAGCCCCGAGCTAGCGGGGCACAGTGGGTGACCGAGAGTCGGGGGCCGTCC
GGAACTTACTATGAACTCCAAAAAGAGAGGGAGCCCCGCGCGAACTCATTCCATGATGTCCCTG
TCGGTGCGGCCGCAGCGCCGCCTGCTCAGCGCCCGGGTCAGTAGGAGCCAGTCCTTCGCAGGCG
TCCTCGGCAGCCAAGAGCGCGGGCCCAGGAACTTCACGGTCTTCAGCCCACCAGGGCCTCAACG
GAAGCCTTTAGTGCTCTCCCGAGTGTCAAGGATGTTTTCTGTGGCCCACCCAGCCCCCAAGGTG
CCACAGCCTGAGAGGCTGGACCTGGTATATGCTGCTCTTAAGCGGGGACTGACGGCCTACTTGG
AAGTGCATCAGCAAGAGCAGGAGAAGCTCCAGCGCCAGATAAAGGAGTCCAAGAGGAATTCCCG
CCTAGGATTCCTGTATGACTTGGATAAGCAAGTCAAGTCCATTGAACGTTTTCTTCGACGACTG
GAATTCCATGCCAGTAAGATTGATGAGCTGTATGAAGCATACTGTGTCCAGCGGCGTCTCAGGG
ATGGTGCCTACAACATGGTTCGTGCTTATAGCACTGGGTCCCCAGGGAGTCGAGAGGCCCGAGA
CAGCCTGGCTGAGGCCACCCGAGGCCATCGAGAGTATACAGAGAGCATGTGTCTTCTGGAGAAT
GAGCTGGAGGCACAGCTGGGCGAGTTTCATCTCCGGATGAAAGGGTTGGCTGGGTTCGCCAGGC
TGTGTGTGGGCGATCAATATGAGATCTGCATGAAATACGGCCGCCAGCGCTGGAAGTTACGAGG
CCGAATAGAGAGTAGTGGAAAGCAAGTGTGGGACAGTGAAGAGACTGTCTTTCTTCCTCTGCTC
ACAGAATTCCTGTCTATCAAGGTGACAGAATTAAAAGGACTGGCTAACCATGTAGTCGTGGGCA
GTGTCTCCTGTGAGACCAAGGACCTGTTTGCCGCCCTGCCCCAGGTTGTGGCTGTGGATATCAA
TGATCTCGGCACTATCAAGCTCAGCCTAGAAGTCATATGGAGTCCCTTTGACAAGGATGACCAG
CCTTCAGCTGCTTCTACAGTCAACAAAGCTTCCACAGTCACCAAGCGGTTTTCCACATATAGCC
AGAGTCCACCAGATACACCCTCACTTCGGGAGCAGGCTTTTTATAACATGTTACGGCGGCAGGA
GGAGTTAGAGAATGGGACAGCATGGTCCCTGTCATCCGAATCTTCTGATGATTCATCCAGCCCG
CAGCTCTCAGGCACTGCTCGATACTCATCAACTCCCAAGCCTCTGGTGCAACAGCCTGAGCCCC
TGCCTGTCCAAGTTACCTTCCGAAGGCCAGAGAGCCTCTCCTCTGGTTCCATGGATGAAGAGCC
ACCTCTGACCCCAGCCCTGGTCAATGGGCATGCCCCTTACAGTCGGACTCTCAGCCACATCAGT
GAAGCCAGCGTGGATGCTGCCTTGACTGAGGCCATGGAAGCTGTGGACTTAAAATGCCCAGCCC
CAGGGCCTAGCCCACTTGTATATCCAGAGTCCACCCATGTGGAGCATGTCAGTAGTGTTCCTCC
TGTTGCAGACAATGGCCGTTCTGCCACAAGTCCTGCCCTAAGTACAGCTGGCCCTGCCCCCACA
TTTATAGACCCTGCCTCATCTACACAGCTAGACTTAGTTCACAAAGCCACAGACTCTGGCTCTT
CTGAGTTGCCAAGCATCACACATACTATGGCAAGCTCTACATATAGTGCTGTGAGCCCGATCAA
CAGTGTTCCAGGCCTAACTTCCACCACTGTAGGTTCTACCCACAAACCCATGCCCTCTCCCCTC
ACCTCTACAGGCTCTATCCCCAGTGTCACAGACTCAATCCAGACTACCACAAGCCCAACTCACA
CCACCCCAAGCCCTACCCACACTACTGTAAGCCCTACACATAGCACTCCAAGTCCCACCCATAC
CACTGTAAGTCCCAGCAATGCTGCTCTAAGCCCCAGCAATGCTACTCCAAGCCTCAGCCACAGT
ACCACTAGTCCTACTCAAAAAGCCACGATGTCAACTCATACCACTAGTGCTGTGGGCCCAGTCC
AGACCACTACAAGTCCCATTTCTACAACTGTAAGCCCCTCCCCTTCTGTAGACACTGCTATAAT
CTCCAGTTCCTCTGCAGTACCCTCTGTCCCAGGCCCTGAAGCACGGCCTTGTAGTCACCCAACC
TCTACTCCCTACACTAAAGCAGACCCCACAGCAGCCTGCACCTCTTCTCCGAGTCTTGCTTCCT
CTGGTCCAAAACCCCTCACAAGCCCTGCCCCAGACTCGCTAGAACAAATCCTTAAGAGCCCAAG
TTCCTCTCCGTCATCCATAGTCCCTGAACCCCAACGTTCAGAACTTAGCCTGGCCTTGGTTGCT
CAAGCCCCAGTCCCTGAAGCCACTGGAGGAGCTGGGGACAGAAGGCTCGAAGAGGCTCTCAGGA
CCCTAATGGCTGCCCTGGATGATTATCGAGGTCAGTTCCCTGAGCTCCAGGGCCTGGAGCAGGA
GGTGACTCGGCTGGAGAGTCTGCTCATGCAGAGGCAAGGCCTGACTCGAAGCCGGGCCTCCAGT
CTTAGCATCACCGTGGAGCATGCCCTGGAGAGCTTCAGCTTCCTCAATGATGATGAAGATGAAG
ACAATGACAGTCCTGGGGACAGGCCCACAAGCAGCCCAGAGGTTGTGGCTGAGGAAAGACTAGA
CTCATCAAATGCCCAGTGTCTAAGCACAGGGTGTTCAGCCCTGGATGCTACCTTGGTCCAGCAC
CTGTACCACTGCAGCTGCCTCCTGCTGAAACTGGGCACATTTGGGCCCCTGCGCTGCCAGGAGG
CATGGGCCCTGGAACGGCTGCTGAGGGAAGCTCGAGTGCTCCAGGAAGTGTGTGAGCACAGCAA
GCTGTGGGGAAATGCTGTCACATCTGCCCAGGAAGTGGTACAGTTCTCTGCCTCTCGGCCCGGT
TTCCTGACCTTTTGGGACCAGTGTACAGAGGGACTCAACCCCTTCCTCTGCCCTGTGGAGCAGG
TGCTCCTCACTTTCTGCAGCCAGTATGGTGCCCGTCTTTCCCTGCGCCAGCCAGGCTTAGCCGA
GGCTGTGTGTGTGAAGTTCCTGGAAGATGCTCTGGGGCAGAAGCTGCCCAGGAGGCCCCACTCA
GGCCCCGGGGAGCAGCTCACCATCTTCCAATTCTGGAGTTATGTAGAAGTCTTGGACAGCCCCT
CCATGGAAGCCTATGTGACAGAGACCGCAGAGGAGGTGTTACTGGTACAGAACCTGAACTCCGA
TGACCAGGCAGTTGTGCTGAAGGCTCTAAGGTTAGCCCCAGAGGGGCGCCTGAGGAAGGATGGG
CTTCGGGCTCTTAGCTCCCTGCTGGTCCACGGCAATAGCAAAGTCATGGCTGCTGTCAGCACCC
AGCTTCGGAGCCTGTCACTTGGTCCTGTCTTCCGGGAAAGGGCTCTTCTGTGCTTCCTGGACCA
GCTTGAGGATGAGGATGTGCAGACTCGAGTGGCCGGGTGCCTGGCTTTGGGCTGTATCAAGGCT
CCTGAGGGCATTGAGCCCCTGGTGTACTTGTGTCAAACAGACACAGAAGCTGTGAGGGAAGCTG
CCCGGCAGAGCCTCCAGCAGTGTGGGGAAGAAGGACAGTCTGCTCATCGCCAGCTAGAGGAGTC
CCTGGATGCCCTGCCCTGCCTCTTTGGGCCCAGCAGCATGGCCAGCACAGCATTCTGAACTCTG
ATTGCCAGCTCCCAGTGCTCCTTCCCTCATTTTCAGGGCTCACTAGGCACTGGCAGGGAGGGTG
AGGGCTGGTTCCAGTCACCTCTCCCCACAAATTCCTATCAATGAAAATCTAATATATTCTTCTG
TTATCACTGGGGTTGGTAGAATGCCTGAAATGAAGTGCCTCCCAGCCGGTTCTGCATAGCCACA
AACAGTGTCAGGGGCCTGACCGTTTGGTCAGCTTGCTCTGCCTCACCACATCCCTTGGTTTTGT
ATTTTATTTACAGAGTTTTACAGATAATAAAAAAGCAAAATGTGTTTCCTACGTGGCTTGGTGC
ACGCCCGAGCCTCTGCTCCAACA

hide sequence

RefSeq Acc Id:

XM_063277921 ⟹ XP_063133991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,400,865 - 50,416,321 (+)	NCBI

RefSeq Acc Id:

XM_063277922 ⟹ XP_063133992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,387,447 - 50,416,321 (+)	NCBI

RefSeq Acc Id:

XM_063277923 ⟹ XP_063133993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,400,866 - 50,416,321 (+)	NCBI

RefSeq Acc Id:

XM_063277924 ⟹ XP_063133994

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,399,546 - 50,416,321 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094130	(Get FASTA)	NCBI Sequence Viewer
	XP_006255536	(Get FASTA)	NCBI Sequence Viewer
	XP_063133991	(Get FASTA)	NCBI Sequence Viewer
	XP_063133992	(Get FASTA)	NCBI Sequence Viewer
	XP_063133993	(Get FASTA)	NCBI Sequence Viewer
	XP_063133994	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99098	(Get FASTA)	NCBI Sequence Viewer
	EDL92384	(Get FASTA)	NCBI Sequence Viewer
	EDL92385	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023710
	ENSRNOP00000023710.5
	ENSRNOP00000069592
	ENSRNOP00000096363
	ENSRNOP00000102696
GenBank Protein	Q4FZU8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001094130 ⟸ NM_001100660

- UniProtKB:

Q4FZU8 (UniProtKB/Swiss-Prot), A6IYQ8 (UniProtKB/TrEMBL), A0A0G2JVR9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMSLSVRPQRRLLSARVSRSQSFAGVLGSQERGPRNFTVFSPPGPQRKPLVLSRVSRMFSVAHP
APKVPQPERLDLVYAALKRGLTAYLEVHQQEQEKLQRQIKESKRNSRLGFLYDLDKQVKSIERF
LRRLEFHASKIDELYEAYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLAEATRGHREYTESMC
LLENELEAQLGEFHLRMKGLAGFARLCVGDQYEICMKYGRQRWKLRGRIESSGKQVWDSEETVF
LPLLTEFLSIKVTELKGLANHVVVGSVSCETKDLFAALPQVVAVDINDLGTIKLSLEVIWSPFD
KDDQPSAASTVNKASTVTKRFSTYSQSPPDTPSLREQAFYNMLRRQEELENGTAWSLSSESSDD
SSSPQLSGTARYSSTPKPLVQQPEPLPVQVTFRRPESLSSGSMDEEPPLTPALVNGHAPYSRTL
SHISEASVDAALTEAMEAVDLKCPAPGPSPLVYPESTHVEHVSSVPPVADNGRSATSPALSTAG
PAPTFIDPASSTQLDLVHKATDSGSSELPSITHTMASSTYSAVSPINSVPGLTSTTVGSTHKPM
PSPLTSTGSIPSVTDSIQTTTSPTHTTPSPTHTTVSPTHSTPSPTHTTVSPSNAALSPSNATPS
LSHSTTSPTQKATMSTHTTSAVGPVQTTTSPISTTVSPSPSVDTAIISSSSAVPSVPGPEARPC
SHPTSTPYTKADPTAACTSSPSLASSGPKPLTSPAPDSLEQILKSPSSSPSSIVPEPQRSELSL
ALVAQAPVPEATGGAGDRRLEEALRTLMAALDDYRGQFPELQGLEQEVTRLESLLMQRQGLTRS
RASSLSITVEHALESFSFLNDDEDEDNDSPGDRPTSSPEVVAEERLDSSNAQCLSTGCSALDAT
LVQHLYHCSCLLLKLGTFGPLRCQEAWALERLLREARVLQEVCEHSKLWGNAVTSAQEVVQFSA
SRPGFLTFWDQCTEGLNPFLCPVEQVLLTFCSQYGARLSLRQPGLAEAVCVKFLEDALGQKLPR
RPHSGPGEQLTIFQFWSYVEVLDSPSMEAYVTETAEEVLLVQNLNSDDQAVVLKALRLAPEGRL
RKDGLRALSSLLVHGNSKVMAAVSTQLRSLSLGPVFRERALLCFLDQLEDEDVQTRVAGCLALG
CIKAPEGIEPLVYLCQTDTEAVREAARQSLQQCGEEGQSAHRQLEESLDALPCLFGPSSMASTA
F

hide sequence

RefSeq Acc Id:	XP_006255536 ⟸ XM_006255474
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6B430 (UniProtKB/TrEMBL), A0A0G2JVR9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSKKRGSPARTHSMMSLSVRPQRRLLSARVSRSQSFAGVLGSQERGPRNFTVFSPPGPQRKPL VLSRVSRMFSVAHPAPKVPQPERLDLVYAALKRGLTAYLEVHQQEQEKLQRQIKESKRNSRLGF LYDLDKQVKSIERFLRRLEFHASKIDELYEAYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLA EATRGHREYTESMCLLENELEAQLGEFHLRMKGLAGFARLCVGDQYEICMKYGRQRWKLRGRIE SSGKQVWDSEETVFLPLLTEFLSIKVTELKGLANHVVVGSVSCETKDLFAALPQVVAVDINDLG TIKLSLEVIWSPFDKDDQPSAASTVNKASTVTKRFSTYSQSPPDTPSLREQAFYNMLRRQEELE NGTAWSLSSESSDDSSSPQLSGTARYSSTPKPLVQQPEPLPVQVTFRRPESLSSGSMDEEPPLT PALVNGHAPYSRTLSHISEASVDAALTEAMEAVDLKCPAPGPSPLVYPESTHVEHVSSVPPVAD NGRSATSPALSTAGPAPTFIDPASSTQLDLVHKATDSGSSELPSITHTMASSTYSAVSPINSVP GLTSTTVGSTHKPMPSPLTSTGSIPSVTDSIQTTTSPTHTTPSPTHTTVSPTHSTPSPTHTTVS PSNAALSPSNATPSLSHSTTSPTQKATMSTHTTSAVGPVQTTTSPISTTVSPSPSVDTAIISSS SAVPSVPGPEARPCSHPTSTPYTKADPTAACTSSPSLASSGPKPLTSPAPDSLEQILKSPSSSP SSIVPEPQRSELSLALVAQAPVPEATGGAGDRRLEEALRTLMAALDDYRGQFPELQGLEQEVTR LESLLMQRQGLTRSRASSLSITVEHALESFSFLNDDEDEDNDSPGDRPTSSPEVVAEERLDSSN AQCLSTGCSALDATLVQHLYHCSCLLLKLGTFGPLRCQEAWALERLLREARVLQEVCEHSKLWG NAVTSAQEVVQFSASRPGFLTFWDQCTEGLNPFLCPVEQVLLTFCSQYGARLSLRQPGLAEAVC VKFLEDALGQKLPRRPHSGPGEQLTIFQFWSYVEVLDSPSMEAYVTETAEEVLLVQNLNSDDQA VVLKALRLAPEGRLRKDGLRALSSLLVHGNSKVMAAVSTQLRSLSLGPVFRERALLCFLDQLED EDVQTRVAGCLALGCIKAPEGIEPLVYLCQTDTEAVREAARQSLQQCGEEGQSAHRQLEESLDA LPCLFGPSSMASTAF hide sequence

Ensembl Acc Id:

ENSRNOP00000069592 ⟸ ENSRNOT00000089022

Ensembl Acc Id:

ENSRNOP00000023710 ⟸ ENSRNOT00000023710

Ensembl Acc Id:

ENSRNOP00000096363 ⟸ ENSRNOT00000116738

RefSeq Acc Id:	XP_063133992 ⟸ XM_063277922
- Peptide Label:	isoform X3
- UniProtKB:	A6IYQ6 (UniProtKB/TrEMBL), A0A0G2JVR9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133994 ⟸ XM_063277924
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JVR9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133991 ⟸ XM_063277921
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVR9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133993 ⟸ XM_063277923
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JVR9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102696 ⟸ ENSRNOT00000139880

Protein Domains

FAM65 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4FZU8-F1-model_v2	AlphaFold	Q4FZU8	1-1217	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701080

Promoter ID:

EPDNEW_R11604

Type:

initiation region

Name:

Ripor1_1

Description:

RHO family interacting cell polarization regulator 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	37,568,143 - 37,568,203	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307772	AgrOrtholog
BioCyc Gene	G2FUF-5822	BioCyc
Ensembl Genes	ENSRNOG00000017604	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000023710	ENTREZGENE
	ENSRNOT00000023710.7	UniProtKB/Swiss-Prot
	ENSRNOT00000089022	ENTREZGENE
	ENSRNOT00000116738	ENTREZGENE
	ENSRNOT00000139880	ENTREZGENE
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7459580	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/Swiss-Prot
	ARM-type_fold	UniProtKB/Swiss-Prot
	FAM65_N	UniProtKB/Swiss-Prot
	RIPOR3	UniProtKB/Swiss-Prot
KEGG Report	rno:291974	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116235	IMAGE-MGC_LOAD
NCBI Gene	291974	ENTREZGENE
PANTHER	PTHR15829	UniProtKB/Swiss-Prot
	RHO FAMILY-INTERACTING CELL POLARIZATION REGULATOR 1	UniProtKB/Swiss-Prot
Pfam	PL48	UniProtKB/Swiss-Prot
PhenoGen	Ripor1	PhenoGen
RatGTEx	ENSRNOG00000017604	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0A0G2JVR9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B430	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LNN6_RAT	UniProtKB/TrEMBL
	A6IYQ6	ENTREZGENE, UniProtKB/TrEMBL
	A6IYQ8	ENTREZGENE, UniProtKB/TrEMBL
	Q4FZU8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-07	Ripor1	RHO family interacting cell polarization regulator 1	Fam65a	family with sequence similarity 65, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam65a	family with sequence similarity 65, member A	RGD1307772	similar to mKIAA1930 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1307772	similar to mKIAA1930 protein	RGD1307772_predicted	similar to mKIAA1930 protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307772_predicted	similar to mKIAA1930 protein (predicted)	LOC291974_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291974_predicted	similar to mKIAA1930 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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