Cmtm6 (CKLF-like MARVEL transmembrane domain containing 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cmtm6 (CKLF-like MARVEL transmembrane domain containing 6) Rattus norvegicus
Analyze
Symbol: Cmtm6
Name: CKLF-like MARVEL transmembrane domain containing 6
RGD ID: 1307765
Description: Predicted to be involved in endocytic recycling; protein transport; and regulation of protein stability. Predicted to be located in early endosome membrane; plasma membrane; and recycling endosome membrane. Predicted to be active in membrane. Orthologous to human CMTM6 (CKLF like MARVEL transmembrane domain containing 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chemokine-like factor super family 6; chemokine-like factor superfamily 6; CKLF-like MARVEL transmembrane domain-containing protein 6; Cklfsf6; Da2-17; LOC316035; LRRGT00102
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,301,131 - 123,319,230 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8123,300,918 - 123,319,230 (+)EnsemblGRCr8
mRatBN7.28114,422,934 - 114,441,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,422,921 - 114,441,033 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8120,040,352 - 120,058,259 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,239,589 - 118,257,496 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,082,438 - 116,100,345 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,789,208 - 122,807,560 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,789,453 - 122,807,560 (+)Ensemblrn6Rnor6.0
Rnor_5.08122,101,291 - 122,119,647 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48119,149,810 - 119,165,515 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,669,648 - 113,685,301 (+)NCBICelera
RGSC_v3.18119,169,845 - 119,185,251 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
amitriptyline  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium dichloride  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clomipramine  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
imipramine  (EXP)
ivermectin  (ISO)
ketoconazole  (EXP)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
mifepristone  (ISO)
Monobutylphthalate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
oxycodone  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
rotenone  (EXP)
sodium arsenite  (ISO)
Soman  (EXP)
sulindac  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP,ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:23376485   PMID:28813410   PMID:28813417  


Genomics

Comparative Map Data
Cmtm6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,301,131 - 123,319,230 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8123,300,918 - 123,319,230 (+)EnsemblGRCr8
mRatBN7.28114,422,934 - 114,441,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,422,921 - 114,441,033 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8120,040,352 - 120,058,259 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,239,589 - 118,257,496 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,082,438 - 116,100,345 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,789,208 - 122,807,560 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,789,453 - 122,807,560 (+)Ensemblrn6Rnor6.0
Rnor_5.08122,101,291 - 122,119,647 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48119,149,810 - 119,165,515 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,669,648 - 113,685,301 (+)NCBICelera
RGSC_v3.18119,169,845 - 119,185,251 (+)NCBI
Cytogenetic Map8q32NCBI
CMTM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,481,312 - 32,502,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,474,175 - 32,502,852 (-)Ensemblhg38GRCh38
GRCh37332,522,804 - 32,544,344 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,497,808 - 32,519,407 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34332,497,807 - 32,519,407NCBI
Celera332,459,890 - 32,481,492 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,458,095 - 32,479,708 (-)NCBIHuRef
CHM1_1332,472,791 - 32,494,401 (-)NCBICHM1_1
T2T-CHM13v2.0332,478,266 - 32,499,821 (-)NCBIT2T-CHM13v2.0
Cmtm6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,560,184 - 114,578,412 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,560,184 - 114,578,412 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389114,731,157 - 114,749,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,731,116 - 114,749,344 (+)Ensemblmm10GRCm38
MGSCv379114,640,321 - 114,658,461 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369114,579,901 - 114,598,041 (+)NCBIMGSCv36mm8
Celera9115,206,264 - 115,224,671 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map965.06NCBI
Cmtm6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543023,845,977 - 23,866,780 (-)Ensembl
ChiLan1.0NW_00495543023,845,977 - 23,866,408 (-)NCBIChiLan1.0ChiLan1.0
CMTM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,458,667 - 32,480,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,463,434 - 32,488,615 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,399,143 - 32,420,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1332,713,639 - 32,735,745 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,713,639 - 32,735,745 (-)EnsemblpanPan2panpan1.1
CMTM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,295,800 - 12,315,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,295,876 - 12,315,367 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2312,270,601 - 12,290,626 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02312,586,876 - 12,608,821 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,586,949 - 12,608,824 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12312,388,246 - 12,408,284 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,530,372 - 12,552,290 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,535,572 - 12,555,593 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cmtm6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,829,824 - 189,851,703 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647322,968,395 - 22,990,290 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647322,968,397 - 22,990,273 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMTM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11318,461,515 - 18,485,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,262,461 - 20,287,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CMTM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11576,980,942 - 77,005,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1576,973,475 - 77,005,095 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604150,335,464 - 50,360,023 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmtm6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478810,547,530 - 10,575,610 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cmtm6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18105,336,957 - 105,355,035 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cmtm6
70 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:685
Count of miRNA genes:301
Interacting mature miRNAs:390
Transcripts:ENSRNOT00000014585
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8122879213126360737Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
D8Rat200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,435,431 - 114,435,660 (+)MAPPERmRatBN7.2
Rnor_6.08122,801,958 - 122,802,186NCBIRnor6.0
Rnor_5.08122,114,045 - 122,114,273UniSTSRnor5.0
RGSC_v3.48119,162,559 - 119,162,788RGDRGSC3.4
RGSC_v3.48119,162,560 - 119,162,788UniSTSRGSC3.4
Celera8113,682,346 - 113,682,574UniSTS
RGSC_v3.18119,182,296 - 119,182,525RGD
SHRSP x BN Map876.2399RGD
SHRSP x BN Map876.2399UniSTS
Cytogenetic Map8q32UniSTS
RH127860  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,440,605 - 114,440,796 (+)MAPPERmRatBN7.2
mRatBN7.2284,242,732 - 84,242,920 (+)MAPPERmRatBN7.2
Rnor_6.0286,296,869 - 86,297,056NCBIRnor6.0
Rnor_6.08122,807,132 - 122,807,322NCBIRnor6.0
Rnor_5.08122,119,219 - 122,119,409UniSTSRnor5.0
Rnor_5.02105,970,688 - 105,970,875UniSTSRnor5.0
RGSC_v3.4285,685,105 - 85,685,292UniSTSRGSC3.4
RGSC_v3.48119,167,734 - 119,167,924UniSTSRGSC3.4
Celera8113,687,520 - 113,687,710UniSTS
Celera279,697,623 - 79,697,810UniSTS
Cytogenetic Map8q32UniSTS
RH129085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,440,773 - 114,440,969 (+)MAPPERmRatBN7.2
mRatBN7.2284,242,897 - 84,243,095 (+)MAPPERmRatBN7.2
Rnor_6.0286,297,034 - 86,297,231NCBIRnor6.0
Rnor_6.08122,807,300 - 122,807,495NCBIRnor6.0
Rnor_5.08122,119,387 - 122,119,582UniSTSRnor5.0
Rnor_5.02105,970,853 - 105,971,050UniSTSRnor5.0
RGSC_v3.4285,685,270 - 85,685,467UniSTSRGSC3.4
RGSC_v3.48119,167,902 - 119,168,097UniSTSRGSC3.4
Celera8113,687,688 - 113,687,883UniSTS
Celera279,697,788 - 79,697,985UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014585   ⟹   ENSRNOP00000014585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8123,300,918 - 123,319,230 (+)Ensembl
mRatBN7.2 Ensembl8114,422,921 - 114,441,033 (+)Ensembl
Rnor_6.0 Ensembl8122,789,453 - 122,807,560 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138209   ⟹   ENSRNOP00000105379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8123,301,082 - 123,319,226 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154772   ⟹   ENSRNOP00000107224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8123,301,340 - 123,319,230 (+)Ensembl
RefSeq Acc Id: NM_001007802   ⟹   NP_001007803
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,301,131 - 123,319,230 (+)NCBI
mRatBN7.28114,422,934 - 114,441,034 (+)NCBI
Rnor_6.08122,789,208 - 122,804,913 (+)NCBI
Rnor_5.08122,101,291 - 122,119,647 (+)NCBI
RGSC_v3.48119,149,810 - 119,165,515 (+)RGD
Celera8113,669,648 - 113,685,301 (+)RGD
Sequence:
RefSeq Acc Id: NP_001007803   ⟸   NM_001007802
- UniProtKB: Q7TNZ9 (UniProtKB/TrEMBL),   F7FP49 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014585   ⟸   ENSRNOT00000014585
Ensembl Acc Id: ENSRNOP00000107224   ⟸   ENSRNOT00000154772
Ensembl Acc Id: ENSRNOP00000105379   ⟸   ENSRNOT00000138209
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNZ9-F1-model_v2 AlphaFold Q7TNZ9 1-183 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696355
Promoter ID:EPDNEW_R6880
Type:initiation region
Name:Cmtm6_1
Description:CKLF-like MARVEL transmembrane domain containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08122,789,461 - 122,789,521EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307765 AgrOrtholog
BioCyc Gene G2FUF-28912 BioCyc
Ensembl Genes ENSRNOG00000010951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014585 ENTREZGENE
  ENSRNOT00000014585.9 UniProtKB/TrEMBL
  ENSRNOT00000138209.1 UniProtKB/TrEMBL
  ENSRNOT00000154772.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7130158 IMAGE-MGC_LOAD
InterPro Marvel UniProtKB/TrEMBL
  MARVEL-CKLF_proteins UniProtKB/TrEMBL
KEGG Report rno:316035 UniProtKB/TrEMBL
MGC_CLONE MGC:124920 IMAGE-MGC_LOAD
NCBI Gene 316035 ENTREZGENE
PANTHER CKLF-LIKE MARVEL TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
  MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/TrEMBL
PhenoGen Cmtm6 PhenoGen
PROSITE MARVEL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010951 RatGTEx
UniProt A0ABK0L657_RAT UniProtKB/TrEMBL
  A0ABK0LNA2_RAT UniProtKB/TrEMBL
  F7FP49 ENTREZGENE, UniProtKB/TrEMBL
  Q32PY4_RAT UniProtKB/TrEMBL
  Q7TNZ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Cmtm6  CKLF-like MARVEL transmembrane domain containing 6  Cklfsf6  chemokine-like factor super family 6  Symbol and Name updated 1299863 APPROVED
2005-12-06 Cklfsf6  chemokine-like factor super family 6  Cklfsf6_predicted  chemokine-like factor super family 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cklfsf6_predicted  chemokine-like factor super family 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED