Ptpdc1 (protein tyrosine phosphatase domain containing 1) - Rat Genome Database

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Gene: Ptpdc1 (protein tyrosine phosphatase domain containing 1) Rattus norvegicus
Analyze
Symbol: Ptpdc1
Name: protein tyrosine phosphatase domain containing 1
RGD ID: 1307698
Description: Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291022; protein tyrosine phosphatase domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,235,311 - 16,284,160 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1716,235,263 - 16,284,158 (+)EnsemblGRCr8
mRatBN7.21716,028,964 - 16,076,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1716,049,382 - 16,076,512 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1715,908,234 - 15,956,796 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,513,215 - 17,561,781 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,835,026 - 15,883,594 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01716,333,369 - 16,381,887 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1716,333,415 - 16,380,573 (+)Ensemblrn6Rnor6.0
Rnor_5.01718,389,442 - 18,438,000 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41722,034,186 - 22,082,481 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1715,755,398 - 15,802,644 (+)NCBICelera
RGSC_v3.11722,068,165 - 22,081,963 (+)NCBI
Cytogenetic Map17p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21289087  


Genomics

Comparative Map Data
Ptpdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,235,311 - 16,284,160 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1716,235,263 - 16,284,158 (+)EnsemblGRCr8
mRatBN7.21716,028,964 - 16,076,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1716,049,382 - 16,076,512 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1715,908,234 - 15,956,796 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,513,215 - 17,561,781 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,835,026 - 15,883,594 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01716,333,369 - 16,381,887 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1716,333,415 - 16,380,573 (+)Ensemblrn6Rnor6.0
Rnor_5.01718,389,442 - 18,438,000 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41722,034,186 - 22,082,481 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1715,755,398 - 15,802,644 (+)NCBICelera
RGSC_v3.11722,068,165 - 22,081,963 (+)NCBI
Cytogenetic Map17p14NCBI
PTPDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38994,030,813 - 94,109,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl994,030,794 - 94,109,856 (+)Ensemblhg38GRCh38
GRCh37996,793,095 - 96,872,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36995,832,897 - 95,911,957 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34993,872,630 - 93,951,691NCBI
Celera967,234,631 - 67,313,691 (+)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef966,469,862 - 66,548,925 (+)NCBIHuRef
CHM1_1996,939,857 - 97,018,968 (+)NCBICHM1_1
T2T-CHM13v2.09106,198,554 - 106,277,594 (+)NCBIT2T-CHM13v2.0
Ptpdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391348,731,345 - 48,779,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1348,731,348 - 48,779,140 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381348,577,869 - 48,625,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1348,577,872 - 48,625,664 (-)Ensemblmm10GRCm38
MGSCv371348,673,241 - 48,720,942 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361348,589,809 - 48,637,510 (-)NCBIMGSCv36mm8
Celera1349,668,289 - 49,715,985 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.86NCBI
Ptpdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555153,912,117 - 4,044,999 (+)Ensembl
ChiLan1.0NW_0049555153,912,495 - 4,044,999 (+)NCBIChiLan1.0ChiLan1.0
PTPDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21145,320,971 - 45,400,235 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1945,323,351 - 45,402,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0965,151,252 - 65,230,335 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1993,212,501 - 93,290,945 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl993,212,501 - 93,290,945 (+)EnsemblpanPan2panpan1.1
PTPDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1197,942,905 - 98,002,025 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl197,944,325 - 98,002,074 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha198,339,476 - 98,398,283 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0198,560,495 - 98,619,810 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl198,561,623 - 98,619,511 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,175,878 - 98,234,664 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0197,911,546 - 97,970,822 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0198,666,042 - 98,725,278 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ptpdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049449,006,809 - 9,045,890 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937000156,596 - 195,717 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004937000156,634 - 195,760 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl343,321,476 - 43,418,784 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1343,321,391 - 43,418,788 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2344,640,924 - 44,736,247 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112104,365,169 - 104,499,156 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12104,365,419 - 104,446,306 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603892,677,822 - 92,802,996 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptpdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248682,414,265 - 2,487,620 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248682,414,320 - 2,517,703 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ptpdc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11467,561,983 - 67,590,847 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ptpdc1
382 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:129
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000060550
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920650523859062Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920650523859062Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171553702528637951Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17798524316523460Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920650523859062Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat

Markers in Region
D17Got20  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81716,277,847 - 16,278,102 (+)Marker Load Pipeline
mRatBN7.21716,071,491 - 16,071,747 (+)MAPPERmRatBN7.2
Rnor_6.01716,375,568 - 16,375,822NCBIRnor6.0
Rnor_5.01718,431,681 - 18,431,935UniSTSRnor5.0
RGSC_v3.41722,077,475 - 22,077,730RGDRGSC3.4
RGSC_v3.41722,077,476 - 22,077,730UniSTSRGSC3.4
Celera1715,797,639 - 15,797,893UniSTS
RGSC_v3.11722,077,476 - 22,077,730RGD
RH 3.4 Map17192.0RGD
RH 3.4 Map17192.0UniSTS
RH 2.0 Map17147.6RGD
Cytogenetic Map17p14UniSTS
BE108539  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21716,030,364 - 16,030,538 (+)MAPPERmRatBN7.2
Rnor_6.01716,334,816 - 16,334,989NCBIRnor6.0
Rnor_5.01718,390,854 - 18,391,027UniSTSRnor5.0
RGSC_v3.41722,035,587 - 22,035,760UniSTSRGSC3.4
Celera1715,756,799 - 15,756,972UniSTS
RH 3.4 Map17187.4UniSTS
Cytogenetic Map17p14UniSTS
AU046352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21716,071,522 - 16,071,758 (+)MAPPERmRatBN7.2
Rnor_6.01716,375,601 - 16,375,832NCBIRnor6.0
Rnor_5.01718,431,714 - 18,431,945UniSTSRnor5.0
RGSC_v3.41722,077,509 - 22,077,740UniSTSRGSC3.4
Celera1715,797,672 - 15,797,903UniSTS
Cytogenetic Map17p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 160 91 90 59 83 59 6 346 182 10 139 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000060550   ⟹   ENSRNOP00000057289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1716,333,415 - 16,380,573 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089140   ⟹   ENSRNOP00000075617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1716,340,226 - 16,380,248 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1716,049,382 - 16,076,512 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169259   ⟹   ENSRNOP00000103066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1716,235,347 - 16,284,158 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171451   ⟹   ENSRNOP00000098824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1716,235,263 - 16,284,158 (+)Ensembl
RefSeq Acc Id: NM_001106104   ⟹   NP_001099574
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,311 - 16,282,853 (+)NCBI
mRatBN7.21716,028,964 - 16,076,512 (+)NCBI
Rnor_6.01716,333,415 - 16,380,573 (+)NCBI
Rnor_5.01718,389,442 - 18,438,000 (+)NCBI
RGSC_v3.41722,034,186 - 22,082,481 (+)RGD
Celera1715,755,398 - 15,802,644 (+)RGD
Sequence:
RefSeq Acc Id: XM_063276152   ⟹   XP_063132222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276153   ⟹   XP_063132223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,429 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276154   ⟹   XP_063132224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,282,355 (+)NCBI
RefSeq Acc Id: XM_063276155   ⟹   XP_063132225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,282,355 (+)NCBI
RefSeq Acc Id: XM_063276156   ⟹   XP_063132226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,256,152 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276157   ⟹   XP_063132227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,517 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276158   ⟹   XP_063132228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,437 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276159   ⟹   XP_063132229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,442 - 16,284,160 (+)NCBI
RefSeq Acc Id: XR_010058819
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,284,160 (+)NCBI
RefSeq Acc Id: XR_010058821
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,429 - 16,284,160 (+)NCBI
RefSeq Acc Id: XR_010058823
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,282,355 (+)NCBI
RefSeq Acc Id: NP_001099574   ⟸   NM_001106104
- UniProtKB: A6J6Y7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075617   ⟸   ENSRNOT00000089140
Ensembl Acc Id: ENSRNOP00000057289   ⟸   ENSRNOT00000060550
RefSeq Acc Id: XP_063132223   ⟸   XM_063276153
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132228   ⟸   XM_063276158
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063132229   ⟸   XM_063276159
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063132227   ⟸   XM_063276157
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063132226   ⟸   XM_063276156
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063132222   ⟸   XM_063276152
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063132224   ⟸   XM_063276154
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063132225   ⟸   XM_063276155
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000103066   ⟸   ENSRNOT00000169259
Ensembl Acc Id: ENSRNOP00000098824   ⟸   ENSRNOT00000171451
Protein Domains
Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KB18-F1-model_v2 AlphaFold A0A0G2KB18 1-796 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700360
Promoter ID:EPDNEW_R10884
Type:initiation region
Name:Ptpdc1_1
Description:protein tyrosine phosphatase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01716,333,372 - 16,333,432EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307698 AgrOrtholog
BioCyc Gene G2FUF-9976 BioCyc
Ensembl Genes ENSRNOG00000026564 Ensembl
  ENSRNOG00000064794 Ensembl
  ENSRNOG00000086607 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000169259 ENTREZGENE
  ENSRNOT00000169259.1 UniProtKB/TrEMBL
  ENSRNOT00000171451 ENTREZGENE
  ENSRNOT00000171451.1 UniProtKB/TrEMBL
Gene3D-CATH Protein tyrosine phosphatase superfamily UniProtKB/TrEMBL
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTP UniProtKB/TrEMBL
  PTPDC1_PTP UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/TrEMBL
KEGG Report rno:291022 UniProtKB/TrEMBL
NCBI Gene 291022 ENTREZGENE
PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PhenoGen Ptpdc1 PhenoGen
PROSITE TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026564 RatGTEx
  ENSRNOG00000064794 RatGTEx
  ENSRNOG00000086607 RatGTEx
SMART DSPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP (Phosphotyrosine protein) phosphatases II UniProtKB/TrEMBL
UniProt A0ABK0LDP8_RAT UniProtKB/TrEMBL
  A0ABK0LMY5_RAT UniProtKB/TrEMBL
  A6J6Y7 ENTREZGENE, UniProtKB/TrEMBL
  A6J6Y8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ptpdc1  protein tyrosine phosphatase domain containing 1   Ptpdc1_predicted  protein tyrosine phosphatase domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ptpdc1_predicted  protein tyrosine phosphatase domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED