Mrps17 (mitochondrial ribosomal protein S17) - Rat Genome Database

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Gene: Mrps17 (mitochondrial ribosomal protein S17) Rattus norvegicus
Analyze
Symbol: Mrps17
Name: mitochondrial ribosomal protein S17
RGD ID: 1307650
Description: Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS17 (mitochondrial ribosomal protein S17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 28S ribosomal protein S17, mitochondrial; ENSRNOG00000066020; LOC288621; small ribosomal subunit protein uS17m
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Mrps17-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,584,635 - 32,587,934 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1232,584,635 - 32,587,812 (-)EnsemblGRCr8
mRatBN7.21226,948,535 - 26,951,828 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,948,347 - 26,951,809 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1226,948,730 - 26,951,737 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1228,084,717 - 28,087,894 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,695,267 - 28,698,444 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,756,748 - 27,759,925 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1233,864,753 - 33,867,930 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1233,777,974 - 33,781,151 (-)NCBILyon_Normotensive
Lyon_Hypertensive1232,649,352 - 32,652,529 (-)NCBILyon_Hypertensive
F344_StmMcwi1243,093,276 - 43,096,453 (-)NCBIF344_StmMcwi
Rnor_6.01230,570,386 - 30,573,670 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,570,386 - 30,573,610 (-)Ensemblrn6Rnor6.0
Rnor_5.01232,511,014 - 32,514,288 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41227,920,681 - 27,924,094 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1228,654,067 - 28,657,244 (-)NCBICelera
RGSC_v3.11227,781,403 - 27,787,065 (+)NCBI
Cytogenetic Map12q13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11402041   PMID:14651853   PMID:18614015   PMID:25838379   PMID:34800366  


Genomics

Comparative Map Data
Mrps17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,584,635 - 32,587,934 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1232,584,635 - 32,587,812 (-)EnsemblGRCr8
mRatBN7.21226,948,535 - 26,951,828 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,948,347 - 26,951,809 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1226,948,730 - 26,951,737 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1228,084,717 - 28,087,894 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,695,267 - 28,698,444 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,756,748 - 27,759,925 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1233,864,753 - 33,867,930 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1233,777,974 - 33,781,151 (-)NCBILyon_Normotensive
Lyon_Hypertensive1232,649,352 - 32,652,529 (-)NCBILyon_Hypertensive
F344_StmMcwi1243,093,276 - 43,096,453 (-)NCBIF344_StmMcwi
Rnor_6.01230,570,386 - 30,573,670 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,570,386 - 30,573,610 (-)Ensemblrn6Rnor6.0
Rnor_5.01232,511,014 - 32,514,288 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41227,920,681 - 27,924,094 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1228,654,067 - 28,657,244 (-)NCBICelera
RGSC_v3.11227,781,403 - 27,787,065 (+)NCBI
Cytogenetic Map12q13NCBI
MRPS17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38755,951,877 - 55,956,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl755,950,705 - 55,956,500 (+)Ensemblhg38GRCh38
GRCh37756,019,570 - 56,024,193 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36755,987,105 - 55,990,528 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34755,793,819 - 55,797,240NCBI
Celera767,073,035 - 67,076,458 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef755,833,496 - 55,836,919 (+)NCBIHuRef
CHM1_1756,022,642 - 56,026,065 (+)NCBICHM1_1
T2T-CHM13v2.0756,111,666 - 56,116,287 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2756,023,858 - 56,027,281 (+)NCBI
Mrps17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,792,514 - 129,795,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,792,561 - 129,799,620 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385129,715,450 - 129,718,712 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,715,497 - 129,722,556 (+)Ensemblmm10GRCm38
MGSCv375130,221,403 - 130,224,566 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365130,030,236 - 130,033,399 (+)NCBIMGSCv36mm8
Celera5126,757,944 - 126,761,109 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.25NCBI
Mrps17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,159,019 - 8,162,680 (+)Ensembl
ChiLan1.0NW_0049554568,159,429 - 8,162,250 (+)NCBIChiLan1.0ChiLan1.0
MRPS17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,803,825 - 60,808,838 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17109,128,544 - 109,133,564 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0756,564,787 - 56,569,715 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1756,988,629 - 56,992,900 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl756,988,778 - 56,993,467 (+)EnsemblpanPan2panpan1.1
MRPS17L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16444,856 - 447,220 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,144,655 - 2,147,019 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.06216,101 - 218,468 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6216,114 - 218,532 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl6248,613 - 251,031 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16192,599 - 194,961 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06186,501 - 188,865 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06357,226 - 359,590 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC120884474
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,247,073 - 50,247,582 (+)NCBIHiC_Itri_2
MRPS17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1316,946,344 - 16,950,870 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,236,802 - 17,241,316 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,821,202 - 2,825,962 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl212,820,233 - 2,826,290 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041180,032,623 - 180,037,393 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11624,249,179 - 24,251,048 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrps17
21 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:52
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000001229
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)122963663737764351Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
RH141085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,949,046 - 26,949,238 (+)MAPPERmRatBN7.2
Rnor_6.01230,570,898 - 30,571,089NCBIRnor6.0
Rnor_5.01232,511,526 - 32,511,717UniSTSRnor5.0
RGSC_v3.41227,923,155 - 27,923,346UniSTSRGSC3.4
Celera1228,654,579 - 28,654,770UniSTS
RH 3.4 Map12452.5UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map12q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001229   ⟹   ENSRNOP00000001229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,948,730 - 26,951,737 (-)Ensembl
Rnor_6.0 Ensembl1230,570,386 - 30,573,563 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,572,616 - 30,573,610 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093534   ⟹   ENSRNOP00000076230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1232,584,635 - 32,587,812 (-)Ensembl
mRatBN7.2 Ensembl1226,948,347 - 26,951,809 (-)Ensembl
Rnor_6.0 Ensembl1230,570,567 - 30,573,607 (-)Ensembl
RefSeq Acc Id: NM_001105923   ⟹   NP_001099393
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,584,635 - 32,587,812 (-)NCBI
mRatBN7.21226,948,535 - 26,951,712 (-)NCBI
Dahl_SR_JrHsd1233,864,753 - 33,867,930 (-)NCBI
Lyon_Normotensive1233,777,974 - 33,781,151 (-)NCBI
Lyon_Hypertensive1232,649,352 - 32,652,529 (-)NCBI
F344_StmMcwi1243,093,276 - 43,096,453 (-)NCBI
Rnor_6.01230,570,386 - 30,573,563 (-)NCBI
Rnor_5.01232,511,014 - 32,514,288 (-)NCBI
RGSC_v3.41227,920,681 - 27,924,094 (+)RGD
Celera1228,654,067 - 28,657,244 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249264   ⟹   XP_006249326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,584,816 - 32,587,934 (-)NCBI
mRatBN7.21226,948,716 - 26,951,828 (-)NCBI
Rnor_6.01230,570,567 - 30,573,670 (-)NCBI
Rnor_5.01232,511,014 - 32,514,288 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598301   ⟹   XP_017453790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,584,816 - 32,587,853 (-)NCBI
mRatBN7.21226,948,716 - 26,950,675 (-)NCBI
Rnor_6.01230,570,567 - 30,573,564 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089223   ⟹   XP_038945151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,584,816 - 32,587,847 (-)NCBI
mRatBN7.21226,948,716 - 26,951,707 (-)NCBI
RefSeq Acc Id: XM_063271165   ⟹   XP_063127235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,584,816 - 32,587,853 (-)NCBI
RefSeq Acc Id: NP_001099393   ⟸   NM_001105923
- UniProtKB: D3ZTR1 (UniProtKB/TrEMBL),   A6J0Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249326   ⟸   XM_006249264
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453790   ⟸   XM_017598301
- Peptide Label: isoform X1
- UniProtKB: D3ZTR1 (UniProtKB/TrEMBL),   A6J0Q4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076230   ⟸   ENSRNOT00000093534
Ensembl Acc Id: ENSRNOP00000001229   ⟸   ENSRNOT00000001229
RefSeq Acc Id: XP_038945151   ⟸   XM_039089223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127235   ⟸   XM_063271165
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTR1-F1-model_v2 AlphaFold D3ZTR1 1-127 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698597
Promoter ID:EPDNEW_R9114
Type:initiation region
Name:Mrps17_1
Description:mitochondrial ribosomal protein S17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01230,573,631 - 30,573,691EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307650 AgrOrtholog
BioCyc Gene G2FUF-19491 BioCyc
Ensembl Genes ENSRNOG00000000926 Ensembl
  ENSRNOG00000066020 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000093534 ENTREZGENE
  ENSRNOT00000093534.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  Ribosomal_S17 UniProtKB/TrEMBL
  S17mt UniProtKB/TrEMBL
KEGG Report rno:288621 UniProtKB/TrEMBL
NCBI Gene 288621 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR24088 UniProtKB/TrEMBL
Pfam Ribosomal_S17 UniProtKB/TrEMBL
PhenoGen Mrps17 PhenoGen
RatGTEx ENSRNOG00000000926 RatGTEx
  ENSRNOG00000066020 RatGTEx
Superfamily-SCOP Nucleic_acid_OB UniProtKB/TrEMBL
UniProt A0A1W2Q6D4_RAT UniProtKB/TrEMBL
  A6J0Q4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTR1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Mrps17  mitochondrial ribosomal protein S17  ENSRNOG00000066020    Data merged from RGD:150343840 737654 PROVISIONAL
2021-08-31 ENSRNOG00000066020        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 Mrps17  mitochondrial ribosomal protein S17   Mrps17_predicted  mitochondrial ribosomal protein S17 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrps17_predicted  mitochondrial ribosomal protein S17 (predicted)      Symbol and Name status set to approved 70820 APPROVED