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Gene: Pex5 (peroxisomal biogenesis factor 5) Rattus norvegicus

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Symbol:

Pex5

Name:

peroxisomal biogenesis factor 5

RGD ID:

1307612

Description:

Predicted to enable peroxisome targeting sequence binding activity; protein carrier chaperone; and small GTPase binding activity. Predicted to be involved in several processes, including establishment of protein localization to peroxisome; pexophagy; and protein tetramerization. Predicted to act upstream of or within several processes, including fatty acid metabolic process; nervous system development; and protein monoubiquitination. Located in peroxisomal membrane. Part of protein-containing complex. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 2A; peroxisome biogenesis disorder 2B; and rhizomelic chondrodysplasia punctata type 5. Orthologous to human PEX5 (peroxisomal biogenesis factor 5); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC103690024; peroxin-5; peroxisomal C-terminal targeting signal import receptor; peroxisomal targeting signal 1 receptor; peroxisomal targeting signal 1 receptor-like; peroxisome biogenesis factor 5; peroxisome receptor 1; PTS1 receptor; PTS1-BP; PTS1R

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PEX5 (peroxisomal biogenesis factor 5)	RGD	RGD
Mus musculus (house mouse):	Pex5 (peroxisomal biogenesis factor 5)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Pex5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PEX5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PEX5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pex5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PEX5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PEX5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pex5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pex5 (peroxisomal biogenesis factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UCP1 (uncoupling protein 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PEX5 (peroxisomal biogenesis factor 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pex5 (peroxisomal biogenesis factor 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pex5 (peroxisomal biogenesis factor 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PEX5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pex5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	prx-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	prx-5	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PEX9	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	pex5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pex5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	158,956,973 - 158,983,581 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	158,956,974 - 158,982,733 (-)	Ensembl				GRCr8
mRatBN7.2	4	157,270,671 - 157,296,432 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,270,672 - 157,296,431 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	163,487,111 - 163,512,826 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,270,018 - 159,295,731 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	157,915,420 - 157,941,178 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	156,983,914 - 157,009,675 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	156,983,915 - 157,009,674 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	4	156,403,016 - 156,427,755 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	223,418,715 - 223,444,193 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	4	224,003,341 - 224,029,474 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	160,567,258 - 160,595,985 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,011,937 - 146,037,676 (-)	NCBI		Celera
RGSC_v3.1	4	160,813,343 - 160,858,163 (-)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cerebrohepatorenal Syndrome, Variant Types (ISO)

Desbuquois dysplasia (ISO)

Fanconi anemia complementation group D2 (ISO)

genetic disease (ISO)

infantile Refsum disease (ISO)

microcephaly (ISO)

peroxisomal biogenesis disorder (ISO)

peroxisomal disease (ISO)

peroxisome biogenesis disorder 1A (ISO)

peroxisome biogenesis disorder 2A (ISO)

peroxisome biogenesis disorder 2B (ISO)

rhizomelic chondrodysplasia punctata (ISO)

rhizomelic chondrodysplasia punctata type 5 (ISO)

steatotic liver disease (ISO)

Zellweger Leukodystrophy (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,3',5-triiodo-L-thyronine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

alendronic acid (EXP)

arsane (ISO)

arsenic atom (ISO)

aspartame (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bromuconazole (EXP)

butanal (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

Dibutyl phosphate (ISO)

ethanol (ISO)

fenthion (ISO)

finasteride (EXP)

folic acid (ISO)

glafenine (EXP)

indometacin (EXP)

lead(0) (ISO)

monosodium L-glutamate (ISO)

nitrates (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

propiconazole (ISO)

Propiverine (EXP)

raloxifene (EXP)

sodium arsenite (ISO)

Soman (EXP)

T-2 toxin (EXP)

tetrachloromethane (EXP,ISO)

thiram (ISO)

titanium dioxide (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell development (ISO)

cellular response to reactive oxygen species (IEA,ISO)

cerebral cortex cell migration (ISO)

cerebral cortex neuron differentiation (ISO)

endoplasmic reticulum organization (ISO)

fatty acid beta-oxidation (ISO)

lipid metabolic process (ISO)

mitochondrial membrane organization (ISO)

mitochondrion organization (ISO)

negative regulation of protein-containing complex assembly (IEA,ISO)

neuromuscular process (ISO)

neuron migration (ISO)

peroxisome organization (ISO)

pexophagy (IEA,ISO,ISS)

positive regulation of multicellular organism growth (ISO)

protein import into peroxisome matrix (IEA,ISO,ISS)

protein import into peroxisome matrix, docking (IBA,IEA,ISO)

protein import into peroxisome matrix, receptor recycling (IEA,ISO,ISS)

protein import into peroxisome matrix, substrate release (IEA,ISO,ISS)

protein import into peroxisome matrix, translocation (ISO)

protein import into peroxisome membrane (IEA,ISO)

protein targeting to peroxisome (ISO)

protein tetramerization (ISO)

protein transport (IEA)

very long-chain fatty acid metabolic process (ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IBA,IEA,ISO)

Golgi apparatus (IEA,ISO)

membrane (IEA,ISO)

mitochondrion (IEA)

peroxisomal matrix (IEA,ISO,ISS)

peroxisomal membrane (IBA,IDA)

peroxisome (IDA,IEA,ISO)

protein-containing complex (IDA,IEA,ISO)

Molecular Function

enzyme binding (IEA,ISO)

peroxisome matrix targeting signal-1 binding (IBA,IEA,ISO,ISS)

peroxisome membrane targeting sequence binding (IEA,ISO)

peroxisome targeting sequence binding (IEA,ISO)

protein binding (ISO)

protein carrier chaperone (IEA,ISO,ISS)

small GTPase binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	A mouse model for Zellweger syndrome.	Baes M, etal., Nat Genet. 1997 Sep;17(1):49-57.
2.	Mitochondrial alterations caused by defective peroxisomal biogenesis in a mouse model for Zellweger syndrome (PEX5 knockout mouse).	Baumgart E, etal., Am J Pathol. 2001 Oct;159(4):1477-94. doi: 10.1016/S0002-9440(10)62534-5.
3.	Absence of peroxisomes in mouse hepatocytes causes mitochondrial and ER abnormalities.	Dirkx R, etal., Hepatology. 2005 Apr;41(4):868-78.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Hsp70 regulates the interaction between the peroxisome targeting signal type 1 (PTS1)-receptor Pex5p and PTS1.	Harano T, etal., Biochem J. 2001 Jul 1;357(Pt 1):157-65.
7.	Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease.	Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
10.	Hepatosteatosis in peroxisome deficient liver despite increased β-oxidation capacity and impaired lipogenesis.	Peeters A, etal., Biochimie. 2011 Oct;93(10):1828-38. doi: 10.1016/j.biochi.2011.06.034. Epub 2011 Jul 5.
11.	Characterization of the mammalian peroxisomal import machinery: Pex2p, Pex5p, Pex12p, and Pex14p are subunits of the same protein assembly.	Reguenga C, etal., J Biol Chem. 2001 Aug 10;276(32):29935-42. Epub 2001 Jun 7.
12.	GOA pipeline	RGD automated data pipeline
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Comprehensive gene review and curation	RGD comprehensive gene curation
16.	Mitochondrial disruption in peroxisome deficient cells is hepatocyte selective but is not mediated by common hepatic peroxisomal metabolites.	Shinde AB, etal., Mitochondrion. 2018 Mar;39:51-59. doi: 10.1016/j.mito.2017.08.013. Epub 2017 Sep 1.

Additional References at PubMed

PMID:7719337	PMID:9668159	PMID:10514471	PMID:10562279	PMID:10653000	PMID:11060344	PMID:11336669	PMID:11420171	PMID:11463335	PMID:11669066	PMID:11829486	PMID:11931631
PMID:12456682	PMID:12477932	PMID:12885776	PMID:14586000	PMID:14709540	PMID:15328363	PMID:16484321	PMID:17442273	PMID:17726030	PMID:18346465	PMID:19197237	PMID:19584060
PMID:20178365	PMID:21375735	PMID:21525035	PMID:21976670	PMID:21980954	PMID:22371489	PMID:34174269	PMID:38470934

Genomics

Comparative Map Data

Pex5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	158,956,973 - 158,983,581 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	158,956,974 - 158,982,733 (-)	Ensembl				GRCr8
mRatBN7.2	4	157,270,671 - 157,296,432 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,270,672 - 157,296,431 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	163,487,111 - 163,512,826 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,270,018 - 159,295,731 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	157,915,420 - 157,941,178 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	156,983,914 - 157,009,675 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	156,983,915 - 157,009,674 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	4	156,403,016 - 156,427,755 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	223,418,715 - 223,444,193 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	4	224,003,341 - 224,029,474 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	160,567,258 - 160,595,985 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,011,937 - 146,037,676 (-)	NCBI		Celera
RGSC_v3.1	4	160,813,343 - 160,858,163 (-)	NCBI
Cytogenetic Map	4	q42	NCBI

PEX5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	7,188,653 - 7,218,574 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	7,188,653 - 7,218,574 (+)	Ensembl			hg38	GRCh38
GRCh37	12	7,341,249 - 7,371,170 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	7,234,225 - 7,255,343 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	7,234,223 - 7,255,342	NCBI
Celera	12	8,917,914 - 8,946,785 (+)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	7,154,705 - 7,183,873 (+)	NCBI		HuRef
CHM1_1	12	7,340,679 - 7,369,353 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	7,201,809 - 7,231,939 (+)	NCBI		T2T-CHM13v2.0

Pex5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	124,373,774 - 124,392,878 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	124,373,775 - 124,392,026 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	124,396,816 - 124,415,944 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	124,396,816 - 124,415,067 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	124,346,834 - 124,365,085 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	124,362,437 - 124,380,668 (-)	NCBI		MGSCv36	mm8
Celera	6	126,087,349 - 126,105,596 (-)	NCBI		Celera
Cytogenetic Map	6	F2	NCBI
cM Map	6	59.15	NCBI

Pex5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,736,189 - 4,755,766 (+)	Ensembl
ChiLan1.0	NW_004955413	4,736,189 - 4,755,559 (+)	NCBI	ChiLan1.0	ChiLan1.0

PEX5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	12,753,209 - 12,775,098 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	12,750,866 - 12,771,857 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	7,318,637 - 7,340,428 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	7,235,049 - 7,255,815 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	7,235,049 - 7,255,815 (+)	Ensembl			panPan2	panpan1.1

PEX5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	37,843,218 - 37,860,664 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	37,809,717 - 37,860,376 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,756,138 - 8,773,549 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,196,735 - 38,214,157 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	38,196,420 - 38,214,129 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	38,070,618 - 38,088,021 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,111,918 - 38,129,293 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	8,233,881 - 8,251,302 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pex5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	101,919,747 - 101,938,591 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936709	587,295 - 606,247 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936709	587,296 - 606,085 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PEX5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	63,542,431 - 63,562,849 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	63,542,422 - 63,562,762 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	65,936,442 - 65,956,834 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PEX5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	7,255,078 - 7,286,500 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	7,256,182 - 7,274,938 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	923,792 - 955,255 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pex5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	3,771,963 - 3,790,985 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624860	3,771,949 - 3,790,982 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pex5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	23,380,257 - 23,405,950 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pex5
233 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1036
Count of miRNA genes:	273
Interacting mature miRNAs:	335
Transcripts:	ENSRNOT00000071625, ENSRNOT00000073341
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

RH137207

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	157,270,840 - 157,271,050 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	156,984,084 - 156,984,293	NCBI	Rnor6.0
Rnor_6.0	4	156,403,186 - 156,403,395	NCBI	Rnor6.0
Rnor_5.0	4	224,003,511 - 224,003,720	UniSTS	Rnor5.0
Rnor_5.0	4	223,418,885 - 223,419,094	UniSTS	Rnor5.0
RGSC_v3.4	4	160,567,428 - 160,567,637	UniSTS	RGSC3.4
Celera	4	146,012,107 - 146,012,316	UniSTS
RH 3.4 Map	4	1003.1	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC111709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB809540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK469240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK477113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV779934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM036217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014028 ⟹ ENSRNOP00000014028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	158,956,974 - 158,982,733 (-)	Ensembl
mRatBN7.2 Ensembl	4	157,270,672 - 157,296,431 (-)	Ensembl
Rnor_6.0 Ensembl	4	156,403,016 - 156,426,760 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000014030 ⟹ ENSRNOP00000014030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	156,404,166 - 156,427,755 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000071625 ⟹ ENSRNOP00000064300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	158,956,974 - 158,982,733 (-)	Ensembl
mRatBN7.2 Ensembl	4	157,270,672 - 157,296,431 (-)	Ensembl
Rnor_6.0 Ensembl	4	156,983,915 - 157,009,674 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073341 ⟹ ENSRNOP00000066869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	156,985,046 - 157,008,947 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085675 ⟹ ENSRNOP00000070292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	156,404,166 - 156,427,755 (-)	Ensembl

RefSeq Acc Id:

NM_001170584 ⟹ NP_001164055

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,982,733 (-)	NCBI
mRatBN7.2	4	157,270,671 - 157,296,431 (-)	NCBI
Rnor_6.0	4	156,983,914 - 157,009,674 (-)	NCBI
Rnor_5.0	4	223,418,715 - 223,444,193 (-)	NCBI
Celera	4	146,011,937 - 146,037,676 (-)	NCBI

Sequence:

show sequence

CCCGTTTCCGTTGAGCTGGGCCGCAGCGCCGCGGTCCAGGCCCCTTTAAGGCCGAGTCCCTCCC
CCTTGCTCCCGCCCCCTCCCCTCCCCCAGCCCACCCCAGGTACTCCGGCCGGCCGGACGGTGCG
ACCAGCGGCGGTGATCTTTGGAGCCTAGGGGGCGCGGGTCCGGGCAAGTCCCCGCCGCTGCGGG
AGCTGGTGGTCACCATGGCAATGCGGGAGCTGGTGGAGAGCGAATGTGGGGGTGCCAACCCGCT
GATGAAGCTGGCCACCCACTTCACCCAGGACAAGGCCCTTCGGCAGGAGGGACTGAGGCCTGGC
CCCTGGCCTCCAGGAGCCTCAGCGGCGGAAACGGTTTCCAAGCCTTTGGGAGTAGGCACTGAAG
ATGAGTTGGTGGCAGAATTCCTGCAGGACCAGAATGCAACTCTTGTATCCCGAGCCCCTCAGAC
CTTCAAGATGGATGACCTCTTGGCGGAGATGCAGGAGATTGAACAGTCAAACTTTCGCCAGGCT
CCTCAGAGAGCCCCTGGTGTGGCAGACTTGGCTTTGTCTGAGAATTGGGCCCAGGAGTTTCTTG
CCGCTGGAGATGCTGTGGATGTAGCTCAGGATTATAACGAGACCGACTGGTCCCAAGAATTCAT
CGCCGAAGTCACGGACCCTCTGTCTGTGTCCCCAGCCCGATGGGCTGAGGAGTATCTGGAACAG
TCTGAGGAGAAGCTGTGGTTGGGAGATCCAGAAGGAACCTCTACCACTGACCGATGGTACGATG
AATACCATCCTGAGGAGGATCTGCAGCACACAGCCAGTGACTTTGTGTCCAAGGTGGACGACCC
CAAATTGGCTAACTCTGAGGGCACATCGGAGGCCTGGGTTGATCAGTTCACAAGACCAGGAAAC
AAACTGGCTGCTCTTCAGGTGGAATTTGAACGAGCCAAGTCAGCTATAGAGTCAGACGTCGATT
TCTGGGACAAGTTGCAGGCAGAGTTGGAGGAGATGGCAAAACGGGATGCTGAGGCGCACCCCTG
GCTTTCTGACTATGACGACCTCACGTCTGCTTCCTATGACAAGGGCTACCAGTTTGAGGAGGAG
AATCCCTTGCGTGACCACCCTCAGCCTTTTGAAGAAGGGCTGCGTCGACTTGAGGAGGGAGACC
TGCCCAATGCTGTGCTGCTCTTCGAGGCTGCGGTGCAGCAGGATCCTAAGCACATGGAGGCCTG
GCAGTACCTGGGCACCACTCAGGCTGAGAACGAGCAAGAGCTCTTGGCCATCAGTGCCCTGCGC
AGGTGTCTGGAGCTAAAGCCAGATAACCGGACAGCACTGATGGCGCTGGCTGTAAGCTTCACCA
ATGAGTCCCTGCAGCGGCAAGCCTGTGAGACGCTGCGGGACTGGCTGCGCTACTCACCGGCCTA
CGCTCACCTGGTGGCTCCTGGTGAAGAAGGGGCTAGTGGGGCAGGACTGGGTCCCAGCAAGCGC
GTCTTGGGATCTCTGTTGTCTGACTCCCTGTTTCTTGAAGTAAAAGAACTCTTCCTGGCAGCTG
TGCGTCTGGACCCTACATCCATTGACCCTGACGTGCAGTGTGGCCTGGGAGTCCTCTTCAACCT
GAGTGGGGAGTACGACAAGGCTGTGGACTGTTTCACGGCTGCCCTCAGTGTCCGCCCCAATGAC
TATTTGCTGTGGAACAAGCTTGGGGCCACCCTGGCCAACGGGAACCAGAGTGAAGAAGCAGTGG
CTGCTTACCGCAGAGCCCTTGAACTACAGCCTGGGTACATCCGCTCCCGCTACAACCTAGGCAT
CAGCTGCATCAACCTTGGGGCTCACCGTGAGGCCGTGGAACACTTTCTGGAGGCCCTGAACATG
CAGAGGAAGAGCCGGGGCCCTCGGGGTGAGGGGGGCGCCATGTCTGAGAACATCTGGAGTACTC
TGCGGTTGGCATTGTCCATGCTAGGCCAGAGTGATGCCTATGGGGCAGCCGATGCTCGGGACCT
GCCTGCCCTTCTAACTATGTTTGGCCTGCCCCAGTGACAGTGGGATGGGCTGCCCTGTGAGTGT
CTGCTTGGAGGGGTCCGAGCTCAGGGTGTGATTCCCTCTCCTCAAATGGGCCTACCAAGGGGGT
GGGCTGATGACCATAAGCGGTACGACCTCTCAGGAGCTGCCTCAGCGTAGGGGTGCATAGCTGT
GTCTTAGGTCCTACTTAATTGTAGGGACGAGCTGTCTCTGTCCTTGGTAATTCAAGGGCTGTAT
ATCCAGCTACAGATCCTTTTCTGTTCATCATGCCCTTTCTTGGTGCTGCTTTTTGGGTAGGACC
CACTGACATAGGGGAATTGTCATCAGCCGCCATTTCTGATAGGGTCTGCCACATTTGTACGTCT
CTCCTTGCCCTACTCTTTCTGGGAATTGGCAATAGTCCAGCTTCCCTGGGCAGTTGTGTGTAAG
AGGTTCCCCTGAGCATGTGTGATGCCGACTGGGACAGATGTTAGAGTTGGTCTGCTCACTGAAA
TGGTGATCCGGCTTACGGTCGAACTTGGGACAATTGCTCACAGTTCCGTCACTCCTGGGAGTGA
CCTTGGATCCTCTGTGGGTGGACACTGAAGCAGTGATGCTAATGTGGTTACTGTAGTGTCCTCA
GGGCCAGGGCTTGTCACGCAGGCGCCATGGCCTGTGAGGGAGGGATGTTCAGTTGTGGAATGAG
CCCAGAGTCAGGTGGGACAGTCGTGGTGTGGTCAGTCCTGCAATCCTCTCTTCTTCTTGGGAGC
CTTGGAAGTAGGAACTGAACAAACTCTTGTAGCAAACTGGTTCAGAAGTTGCATTCTTGCCAAA
TTCCCCAGGGTTCAGTGTTACCATAAGCCTTCTTGAAACATTTATAGGGGATATCATTGAAAAT
CCCCTCCCCCTGTATTCATTACCTCCACAAGGTGAAGATGAAGTGATACTGAGGGAGTGGCTGG
AGACGTCTCCACTGTTTTCTGTGTGGGGAGACGCGCAGACTCCCACAAATGACTGCTAAGCCTC
TTACCTTGTCTTCAGTAGCTAATGATCAGAATTTTTTTTTAAACTGCCATGGTCCCAAAGTTCC
ATCCTGAAATTTATTTTTCTTTGTATGCATATGTGTAAATGATTTAAAAATAAAACTGTAAAAT
ATTTGTATGAAGAATAAACTGGACTGATGTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237384 ⟹ XP_006237446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,982,756 (-)	NCBI
mRatBN7.2	4	157,270,671 - 157,296,432 (-)	NCBI
Rnor_6.0	4	156,983,914 - 157,009,675 (-)	NCBI
Rnor_5.0	4	224,003,341 - 224,029,474 (-)	NCBI

Sequence:

show sequence

GCCCGTTTCCGTTGAGCTGGGCCGCAGCGCCGCGGTCCAGGCCCCTTTAAGGCCGAGTCCCTCC
CCCTTGCTCCCGCCCCCTCCCCTCCCCCAGCCCACCCCAGGTACTCCGGCCGGCCGGACGGTGC
GACCAGCGGCGGTGATCTTTGGAGCCTAGGGGGCGCGGGTCCGGGCAAGTCCCCGCCGCTGCGG
GAGCTGGTGGTCACCATGGCAATGCGGGAGCTGGTGGAGAGCGAATGTGGGGGTGCCAACCCGC
TGATGAAGCTGGCCACCCACTTCACCCAGGACAAGGCCCTTCGGCAGGAGGGACTGAGGCCTGG
CCCCTGGCCTCCAGGAGCCTCAGCGGCGGAAACGGTTTCCAAGCCTTTGGGAGTAGGCACTGAA
GATGAGTTGGTGGCAGAATTCCTGCAGGACCAGAATGCAACTCTTGTATCCCGAGCCCCTCAGA
CCTTCAAGATGGATGACCTCTTGGCGGAGATGCAGGAGATTGAACAGTCAAACTTTCGCCAGGC
TCCTCAGAGAGCCCCTGGTGTGGCAGACTTGGCTTTGTCTGAGAATTGGGCCCAGGAGTTTCTT
GCCGCTGGAGATGCTGTGGATGTAGCTCAGGATTATAACGAGACCGACTGGTCCCAAGAATTCA
TCGCCGAAGTCACGGACCCTCTGTCTGTGTCCCCAGCCCGATGGGCTGAGGAGTATCTGGAACA
GTCTGAGGAGAAGCTGTGGTTGGGAGATCCAGAAGGAACCTCTACCACTGACCGATGGTACGAT
GAATACCATCCTGAGGAGGATCTGCAGCACACAGCCAGTGACTTTGTGTCCAAGGTGGACGACC
CCAAATTGGCTAACTCTGAGTTCCTGAAATTCGTGCGGCAGATTGGCGAGGGGCAGGTGTCCCT
GGAGTCCGCTGCAGGGTCGGGCCGAGCTCAGGCAGAACAGTGGGCAGCAGAGTTTATACAGCAG
CAGGGCACATCGGAGGCCTGGGTTGATCAGTTCACAAGACCAGGAAACAAACTGGCTGCTCTTC
AGGTGGAATTTGAACGAGCCAAGTCAGCTATAGAGTCAGACGTCGATTTCTGGGACAAGTTGCA
GGCAGAGTTGGAGGAGATGGCAAAACGGGATGCTGAGGCGCACCCCTGGCTTTCTGACTATGAC
GACCTCACGTCTGCTTCCTATGACAAGGGCTACCAGTTTGAGGAGGAGAATCCCTTGCGTGACC
ACCCTCAGCCTTTTGAAGAAGGGCTGCGTCGACTTGAGGAGGGAGACCTGCCCAATGCTGTGCT
GCTCTTCGAGGCTGCGGTGCAGCAGGATCCTAAGCACATGGAGGCCTGGCAGTACCTGGGCACC
ACTCAGGCTGAGAACGAGCAAGAGCTCTTGGCCATCAGTGCCCTGCGCAGGTGTCTGGAGCTAA
AGCCAGATAACCGGACAGCACTGATGGCGCTGGCTGTAAGCTTCACCAATGAGTCCCTGCAGCG
GCAAGCCTGTGAGACGCTGCGGGACTGGCTGCGCTACTCACCGGCCTACGCTCACCTGGTGGCT
CCTGGTGAAGAAGGGGCTAGTGGGGCAGGACTGGGTCCCAGCAAGCGCGTCTTGGGATCTCTGT
TGTCTGACTCCCTGTTTCTTGAAGTAAAAGAACTCTTCCTGGCAGCTGTGCGTCTGGACCCTAC
ATCCATTGACCCTGACGTGCAGTGTGGCCTGGGAGTCCTCTTCAACCTGAGTGGGGAGTACGAC
AAGGCTGTGGACTGTTTCACGGCTGCCCTCAGTGTCCGCCCCAATGACTATTTGCTGTGGAACA
AGCTTGGGGCCACCCTGGCCAACGGGAACCAGAGTGAAGAAGCAGTGGCTGCTTACCGCAGAGC
CCTTGAACTACAGCCTGGGTACATCCGCTCCCGCTACAACCTAGGCATCAGCTGCATCAACCTT
GGGGCTCACCGTGAGGCCGTGGAACACTTTCTGGAGGCCCTGAACATGCAGAGGAAGAGCCGGG
GCCCTCGGGGTGAGGGGGGCGCCATGTCTGAGAACATCTGGAGTACTCTGCGGTTGGCATTGTC
CATGCTAGGCCAGAGTGATGCCTATGGGGCAGCCGATGCTCGGGACCTGCCTGCCCTTCTAACT
ATGTTTGGCCTGCCCCAGTGACAGTGGGATGGGCTGCCCTGTGAGTGTCTGCTTGGAGGGGTCC
GAGCTCAGGGTGTGATTCCCTCTCCTCAAATGGGCCTACCAAGGGGGTGGGCTGATGACCATAA
GCGGTACGACCTCTCAGGAGCTGCCTCAGCGTAGGGGTGCATAGCTGTGTCTTAGGTCCTACTT
AATTGTAGGGACGAGCTGTCTCTGTCCTTGGTAATTCAAGGGCTGTATATCCAGCTACAGATCC
TTTTCTGTTCATCATGCCCTTTCTTGGTGCTGCTTTTTGGGTAGGACCCACTGACATAGGGGAA
TTGTCATCAGCCGCCATTTCTGATAGGGTCTGCCACATTTGTACGTCTCTCCTTGCCCTACTCT
TTCTGGGAATTGGCAATAGTCCAGCTTCCCTGGGCAGTTGTGTGTAAGAGGTTCCCCTGAGCAT
GTGTGATGCCGACTGGGACAGATGTTAGAGTTGGTCTGCTCACTGAAATGGTGATCCGGCTTAC
GGTCGAACTTGGGACAATTGCTCACAGTTCCGTCACTCCTGGGAGTGACCTTGGATCCTCTGTG
GGTGGACACTGAAGCAGTGATGCTAATGTGGTTACTGTAGTGTCCTCAGGGCCAGGGCTTGTCA
CGCAGGCGCCATGGCCTGTGAGGGAGGGATGTTCAGTTGTGGAATGAGCCCAGAGTCAGGTGGG
ACAGTCGTGGTGTGGTCAGTCCTGCAATCCTCTCTTCTTCTTGGGAGCCTTGGAAGTAGGAACT
GAACAAACTCTTGTAGCAAACTGGTTCAGAAGTTGCATTCTTGCCAAATTCCCCAGGGTTCAGT
GTTACCATAAGCCTTCTTGAAACATTTATAGGGGATATCATTGAAAATCCCCTCCCCCTGTATT
CATTACCTCCACAAGGTGAAGATGAAGTGATACTGAGGGAGTGGCTGGAGACGTCTCCACTGTT
TTCTGTGTGGGGAGACGCGCAGACTCCCACAAATGACTGCTAAGCCTCTTACCTTGTCTTCAGT
AGCTAATGATCAGAATTTTTTTTTAAACTGCCATGGTCCCAAAGTTCCATCCTGAAATTTATTT
TTCTTTGTATGCATATGTGTAAATGATTTAAAAATAAAACTGTAAAATATTTGTATGAAGAATA
AACTGGACTGATGTGGGTA

hide sequence

RefSeq Acc Id:

XM_006237385 ⟹ XP_006237447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,982,496 (-)	NCBI
mRatBN7.2	4	157,270,671 - 157,296,195 (-)	NCBI
Rnor_6.0	4	156,983,914 - 157,009,415 (-)	NCBI
Rnor_5.0	4	224,003,341 - 224,029,474 (-)	NCBI

Sequence:

show sequence

TGGACAGGCGCGGCGGGGGAGGGGGCTCAGGTGACACGAGCTAAGATTGAGACCCGCAGCGCCA
GCCTGACCCGGGGTGCGGGTTCCGGTGTGCGGTCGGAGGCGTTCCCGCTCTCCCTTGTCCGGGA
GCTGGTGGTCACCATGGCAATGCGGGAGCTGGTGGAGAGCGAATGTGGGGGTGCCAACCCGCTG
ATGAAGCTGGCCACCCACTTCACCCAGGACAAGGCCCTTCGGCAGGAGGGACTGAGGCCTGGCC
CCTGGCCTCCAGGAGCCTCAGCGGCGGAAACGGTTTCCAAGCCTTTGGGAGTAGGCACTGAAGA
TGAGTTGGTGGCAGAATTCCTGCAGGACCAGAATGCAACTCTTGTATCCCGAGCCCCTCAGACC
TTCAAGATGGATGACCTCTTGGCGGAGATGCAGGAGATTGAACAGTCAAACTTTCGCCAGGCTC
CTCAGAGAGCCCCTGGTGTGGCAGACTTGGCTTTGTCTGAGAATTGGGCCCAGGAGTTTCTTGC
CGCTGGAGATGCTGTGGATGTAGCTCAGGATTATAACGAGACCGACTGGTCCCAAGAATTCATC
GCCGAAGTCACGGACCCTCTGTCTGTGTCCCCAGCCCGATGGGCTGAGGAGTATCTGGAACAGT
CTGAGGAGAAGCTGTGGTTGGGAGATCCAGAAGGAACCTCTACCACTGACCGATGGTACGATGA
ATACCATCCTGAGGAGGATCTGCAGCACACAGCCAGTGACTTTGTGTCCAAGGTGGACGACCCC
AAATTGGCTAACTCTGAGTTCCTGAAATTCGTGCGGCAGATTGGCGAGGGGCAGGTGTCCCTGG
AGTCCGCTGCAGGGTCGGGCCGAGCTCAGGCAGAACAGTGGGCAGCAGAGTTTATACAGCAGCA
GGGCACATCGGAGGCCTGGGTTGATCAGTTCACAAGACCAGGAAACAAACTGGCTGCTCTTCAG
GTGGAATTTGAACGAGCCAAGTCAGCTATAGAGTCAGACGTCGATTTCTGGGACAAGTTGCAGG
CAGAGTTGGAGGAGATGGCAAAACGGGATGCTGAGGCGCACCCCTGGCTTTCTGACTATGACGA
CCTCACGTCTGCTTCCTATGACAAGGGCTACCAGTTTGAGGAGGAGAATCCCTTGCGTGACCAC
CCTCAGCCTTTTGAAGAAGGGCTGCGTCGACTTGAGGAGGGAGACCTGCCCAATGCTGTGCTGC
TCTTCGAGGCTGCGGTGCAGCAGGATCCTAAGCACATGGAGGCCTGGCAGTACCTGGGCACCAC
TCAGGCTGAGAACGAGCAAGAGCTCTTGGCCATCAGTGCCCTGCGCAGGTGTCTGGAGCTAAAG
CCAGATAACCGGACAGCACTGATGGCGCTGGCTGTAAGCTTCACCAATGAGTCCCTGCAGCGGC
AAGCCTGTGAGACGCTGCGGGACTGGCTGCGCTACTCACCGGCCTACGCTCACCTGGTGGCTCC
TGGTGAAGAAGGGGCTAGTGGGGCAGGACTGGGTCCCAGCAAGCGCGTCTTGGGATCTCTGTTG
TCTGACTCCCTGTTTCTTGAAGTAAAAGAACTCTTCCTGGCAGCTGTGCGTCTGGACCCTACAT
CCATTGACCCTGACGTGCAGTGTGGCCTGGGAGTCCTCTTCAACCTGAGTGGGGAGTACGACAA
GGCTGTGGACTGTTTCACGGCTGCCCTCAGTGTCCGCCCCAATGACTATTTGCTGTGGAACAAG
CTTGGGGCCACCCTGGCCAACGGGAACCAGAGTGAAGAAGCAGTGGCTGCTTACCGCAGAGCCC
TTGAACTACAGCCTGGGTACATCCGCTCCCGCTACAACCTAGGCATCAGCTGCATCAACCTTGG
GGCTCACCGTGAGGCCGTGGAACACTTTCTGGAGGCCCTGAACATGCAGAGGAAGAGCCGGGGC
CCTCGGGGTGAGGGGGGCGCCATGTCTGAGAACATCTGGAGTACTCTGCGGTTGGCATTGTCCA
TGCTAGGCCAGAGTGATGCCTATGGGGCAGCCGATGCTCGGGACCTGCCTGCCCTTCTAACTAT
GTTTGGCCTGCCCCAGTGACAGTGGGATGGGCTGCCCTGTGAGTGTCTGCTTGGAGGGGTCCGA
GCTCAGGGTGTGATTCCCTCTCCTCAAATGGGCCTACCAAGGGGGTGGGCTGATGACCATAAGC
GGTACGACCTCTCAGGAGCTGCCTCAGCGTAGGGGTGCATAGCTGTGTCTTAGGTCCTACTTAA
TTGTAGGGACGAGCTGTCTCTGTCCTTGGTAATTCAAGGGCTGTATATCCAGCTACAGATCCTT
TTCTGTTCATCATGCCCTTTCTTGGTGCTGCTTTTTGGGTAGGACCCACTGACATAGGGGAATT
GTCATCAGCCGCCATTTCTGATAGGGTCTGCCACATTTGTACGTCTCTCCTTGCCCTACTCTTT
CTGGGAATTGGCAATAGTCCAGCTTCCCTGGGCAGTTGTGTGTAAGAGGTTCCCCTGAGCATGT
GTGATGCCGACTGGGACAGATGTTAGAGTTGGTCTGCTCACTGAAATGGTGATCCGGCTTACGG
TCGAACTTGGGACAATTGCTCACAGTTCCGTCACTCCTGGGAGTGACCTTGGATCCTCTGTGGG
TGGACACTGAAGCAGTGATGCTAATGTGGTTACTGTAGTGTCCTCAGGGCCAGGGCTTGTCACG
CAGGCGCCATGGCCTGTGAGGGAGGGATGTTCAGTTGTGGAATGAGCCCAGAGTCAGGTGGGAC
AGTCGTGGTGTGGTCAGTCCTGCAATCCTCTCTTCTTCTTGGGAGCCTTGGAAGTAGGAACTGA
ACAAACTCTTGTAGCAAACTGGTTCAGAAGTTGCATTCTTGCCAAATTCCCCAGGGTTCAGTGT
TACCATAAGCCTTCTTGAAACATTTATAGGGGATATCATTGAAAATCCCCTCCCCCTGTATTCA
TTACCTCCACAAGGTGAAGATGAAGTGATACTGAGGGAGTGGCTGGAGACGTCTCCACTGTTTT
CTGTGTGGGGAGACGCGCAGACTCCCACAAATGACTGCTAAGCCTCTTACCTTGTCTTCAGTAG
CTAATGATCAGAATTTTTTTTTAAACTGCCATGGTCCCAAAGTTCCATCCTGAAATTTATTTTT
CTTTGTATGCATATGTGTAAATGATTTAAAAATAAAACTGTAAAATATTTGTATGAAGAATAAA
CTGGACTGATGTGGGTA

hide sequence

RefSeq Acc Id:

XM_063286130 ⟹ XP_063142200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,982,735 (-)	NCBI

RefSeq Acc Id:

XM_063286131 ⟹ XP_063142201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,983,357 (-)	NCBI

RefSeq Acc Id:

XM_063286132 ⟹ XP_063142202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,983,437 (-)	NCBI

RefSeq Acc Id:

XM_063286134 ⟹ XP_063142204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,982,495 (-)	NCBI

RefSeq Acc Id:

XM_063286135 ⟹ XP_063142205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,982,737 (-)	NCBI

RefSeq Acc Id:

XM_063286136 ⟹ XP_063142206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,956,973 - 158,983,581 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001164055	(Get FASTA)	NCBI Sequence Viewer
	XP_006237446	(Get FASTA)	NCBI Sequence Viewer
	XP_006237447	(Get FASTA)	NCBI Sequence Viewer
	XP_063142200	(Get FASTA)	NCBI Sequence Viewer
	XP_063142201	(Get FASTA)	NCBI Sequence Viewer
	XP_063142202	(Get FASTA)	NCBI Sequence Viewer
	XP_063142204	(Get FASTA)	NCBI Sequence Viewer
	XP_063142205	(Get FASTA)	NCBI Sequence Viewer
	XP_063142206	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI11710	(Get FASTA)	NCBI Sequence Viewer
	EDM01958	(Get FASTA)	NCBI Sequence Viewer
	EDM01959	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014028
	ENSRNOP00000064300
GenBank Protein	Q2M2R8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001164055 ⟸ NM_001170584

- UniProtKB:

Q2M2R8 (UniProtKB/Swiss-Prot), M0R4L3 (UniProtKB/TrEMBL), A6ILI2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAMRELVESECGGANPLMKLATHFTQDKALRQEGLRPGPWPPGASAAETVSKPLGVGTEDELVA
EFLQDQNATLVSRAPQTFKMDDLLAEMQEIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDA
VDVAQDYNETDWSQEFIAEVTDPLSVSPARWAEEYLEQSEEKLWLGDPEGTSTTDRWYDEYHPE
EDLQHTASDFVSKVDDPKLANSEGTSEAWVDQFTRPGNKLAALQVEFERAKSAIESDVDFWDKL
QAELEEMAKRDAEAHPWLSDYDDLTSASYDKGYQFEEENPLRDHPQPFEEGLRRLEEGDLPNAV
LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNRTALMALAVSFTNESLQ
RQACETLRDWLRYSPAYAHLVAPGEEGASGAGLGPSKRVLGSLLSDSLFLEVKELFLAAVRLDP
TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR
ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL
SMLGQSDAYGAADARDLPALLTMFGLPQ

hide sequence

RefSeq Acc Id:	XP_006237446 ⟸ XM_006237384
- Peptide Label:	isoform X1
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A0A9M1WVX5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAMRELVESECGGANPLMKLATHFTQDKALRQEGLRPGPWPPGASAAETVSKPLGVGTEDELVA EFLQDQNATLVSRAPQTFKMDDLLAEMQEIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDA VDVAQDYNETDWSQEFIAEVTDPLSVSPARWAEEYLEQSEEKLWLGDPEGTSTTDRWYDEYHPE EDLQHTASDFVSKVDDPKLANSEFLKFVRQIGEGQVSLESAAGSGRAQAEQWAAEFIQQQGTSE AWVDQFTRPGNKLAALQVEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSA SYDKGYQFEEENPLRDHPQPFEEGLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN EQELLAISALRRCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEG ASGAGLGPSKRVLGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLPALLTMFGLP Q hide sequence

RefSeq Acc Id:	XP_006237447 ⟸ XM_006237385
- Peptide Label:	isoform X1
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A0A9M1WVX5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAMRELVESECGGANPLMKLATHFTQDKALRQEGLRPGPWPPGASAAETVSKPLGVGTEDELVA EFLQDQNATLVSRAPQTFKMDDLLAEMQEIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDA VDVAQDYNETDWSQEFIAEVTDPLSVSPARWAEEYLEQSEEKLWLGDPEGTSTTDRWYDEYHPE EDLQHTASDFVSKVDDPKLANSEFLKFVRQIGEGQVSLESAAGSGRAQAEQWAAEFIQQQGTSE AWVDQFTRPGNKLAALQVEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSA SYDKGYQFEEENPLRDHPQPFEEGLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN EQELLAISALRRCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEG ASGAGLGPSKRVLGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLPALLTMFGLP Q hide sequence

Ensembl Acc Id:

ENSRNOP00000066869 ⟸ ENSRNOT00000073341

Ensembl Acc Id:

ENSRNOP00000064300 ⟸ ENSRNOT00000071625

Ensembl Acc Id:

ENSRNOP00000070292 ⟸ ENSRNOT00000085675

Ensembl Acc Id:

ENSRNOP00000014030 ⟸ ENSRNOT00000014030

Ensembl Acc Id:

ENSRNOP00000014028 ⟸ ENSRNOT00000014028

RefSeq Acc Id:	XP_063142206 ⟸ XM_063286136
- Peptide Label:	isoform X2
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A6ILI2 (UniProtKB/TrEMBL), M0R4L3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142202 ⟸ XM_063286132
- Peptide Label:	isoform X1
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A0A9M1WVX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142201 ⟸ XM_063286131
- Peptide Label:	isoform X1
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A0A9M1WVX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142205 ⟸ XM_063286135
- Peptide Label:	isoform X2
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A6ILI2 (UniProtKB/TrEMBL), M0R4L3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142200 ⟸ XM_063286130
- Peptide Label:	isoform X1
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A0A9M1WVX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142204 ⟸ XM_063286134
- Peptide Label:	isoform X2
- UniProtKB:	Q2M2R8 (UniProtKB/Swiss-Prot), A6ILI2 (UniProtKB/TrEMBL), M0R4L3 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2M2R8-F1-model_v2	AlphaFold	Q2M2R8	1-640	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693378

Promoter ID:

EPDNEW_R3903

Type:

initiation region

Name:

Pex5_1

Description:

peroxisomal biogenesis factor 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	157,009,583 - 157,009,643	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307612	AgrOrtholog
BioCyc Gene	G2FUF-43110	BioCyc
Ensembl Genes	ENSRNOG00000010407	Ensembl
	ENSRNOG00000049203	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000014028	ENTREZGENE
	ENSRNOT00000071625	ENTREZGENE
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7369235	IMAGE-MGC_LOAD
InterPro	PTS1R_family	UniProtKB/Swiss-Prot
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
	TPR_repeat	UniProtKB/Swiss-Prot
KEGG Report	rno:312703	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125175	IMAGE-MGC_LOAD
NCBI Gene	312703	ENTREZGENE
PANTHER	PTHR10130	UniProtKB/Swiss-Prot
	PTHR10130:SF2	UniProtKB/Swiss-Prot
Pfam	TPR_16	UniProtKB/Swiss-Prot
	TPR_8	UniProtKB/Swiss-Prot
PhenoGen	Pex5	PhenoGen
PROSITE	TPR	UniProtKB/Swiss-Prot
	TPR_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010407	RatGTEx
	ENSRNOG00000049203	RatGTEx
SMART	TPR	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot
UniProt	A0A9M1WVX5	ENTREZGENE, UniProtKB/TrEMBL
	A6ILI2	ENTREZGENE, UniProtKB/TrEMBL
	M0R4L3	ENTREZGENE, UniProtKB/TrEMBL
	PEX5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Pex5	peroxisomal biogenesis factor 5	LOC103690024	peroxisomal targeting signal 1 receptor-like	Data merged from RGD:9150037	737654	PROVISIONAL
2014-08-25	LOC103690024	peroxisomal targeting signal 1 receptor-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-10-24	Pex5	peroxisomal biogenesis factor 5	Pex5	peroxisome biogenesis factor 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Pex5	peroxisome biogenesis factor 5	Pex5_predicted	peroxisome biogenesis factor 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pex5_predicted	peroxisome biogenesis factor 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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