H4c14 (H4 clustered histone 14) - Rat Genome Database

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Gene: H4c14 (H4 clustered histone 14) Rattus norvegicus
Analyze
Symbol: H4c14 (Ensembl: Hist1h4b)
Name: H4 clustered histone 14 (Ensembl:histone cluster 1 H4 family member B)
RGD ID: 1307448
Description: Predicted to be a structural constituent of chromatin. Predicted to be involved in negative regulation of megakaryocyte differentiation and nucleosome assembly. Predicted to be located in nucleus. Predicted to be part of CENP-A containing nucleosome. Orthologous to several human genes including H4C2 (H4 clustered histone 2); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH thapsigargin; 2-hydroxypropanoic acid (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: H4c16; H4c2; H4f16; Hist1h4b; Hist1h4m; Hist2h4; Hist4h4; histone 2, H4; histone cluster 2, H4; histone H4; LOC295277
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,520,468 - 186,520,863 (-)NCBIGRCr8
mRatBN7.22183,831,601 - 183,831,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,825,994 - 183,832,048 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,495,168 - 191,495,563 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,294,310 - 189,294,705 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,127,704 - 184,128,099 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,411,955 - 198,412,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,411,955 - 198,412,350 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,897,714 - 217,898,109 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,075,740 - 191,076,135 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,038,548 - 191,038,860 (-)NCBI
Celera2176,359,156 - 176,359,551 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14585971   PMID:14718166   PMID:18474616   PMID:19135898   PMID:19199708   PMID:19946888   PMID:20458337   PMID:20498094   PMID:21630459   PMID:21636898   PMID:22368283   PMID:22658674  
PMID:22681889   PMID:23376485   PMID:23533145   PMID:23979707   PMID:24625528   PMID:24699735   PMID:25615412  


Genomics

Comparative Map Data
H4c14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,520,468 - 186,520,863 (-)NCBIGRCr8
mRatBN7.22183,831,601 - 183,831,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,825,994 - 183,832,048 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,495,168 - 191,495,563 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,294,310 - 189,294,705 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,127,704 - 184,128,099 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,411,955 - 198,412,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,411,955 - 198,412,350 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,897,714 - 217,898,109 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,075,740 - 191,076,135 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,038,548 - 191,038,860 (-)NCBI
Celera2176,359,156 - 176,359,551 (-)NCBICelera
Cytogenetic Map2q34NCBI
H4C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,026,896 - 26,027,283 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,026,896 - 26,027,283 (-)EnsemblGRCh38hg38GRCh38
GRCh37626,027,124 - 26,027,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,135,103 - 26,135,459 (-)NCBINCBI36Build 36hg18NCBI36
Build 34626,135,102 - 26,135,459NCBI
Celera627,254,348 - 27,254,704 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef625,970,187 - 25,970,543 (-)NCBIHuRef
CHM1_1626,029,397 - 26,029,753 (-)NCBICHM1_1
T2T-CHM13v2.0625,892,832 - 25,893,219 (-)NCBIT2T-CHM13v2.0
LOC100992212
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,670,608 - 40,673,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,672,040 - 36,674,619 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,858,656 - 25,860,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,518,248 - 26,518,752 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,173,609 - 15,173,920 (-)Ensemblpanpan1.1panPan2
H4C14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,129,585 - 59,130,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,129,682 - 59,129,993 (+)EnsemblCanFam3.1canFam3CanFam3.1
LOC106145261
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,732,895 - 1,733,315 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366711,888,128 - 1,888,666 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0

Variants

.
Variants in H4c14
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:84
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000040210
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat

Markers in Region
RH132342  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22183,833,183 - 183,833,404 (+)MAPPERmRatBN7.2
Rnor_6.02198,413,538 - 198,413,758NCBIRnor6.0
Rnor_5.02217,899,297 - 217,899,517UniSTSRnor5.0
RGSC_v3.42191,077,323 - 191,077,543UniSTSRGSC3.4
Celera2176,360,739 - 176,360,959UniSTS
RH 3.4 Map21219.3UniSTS
Cytogenetic Map2q34UniSTS
RH142719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22183,832,390 - 183,832,585 (+)MAPPERmRatBN7.2
Rnor_6.02198,412,745 - 198,412,939NCBIRnor6.0
Rnor_5.02217,898,504 - 217,898,698UniSTSRnor5.0
RGSC_v3.42191,076,530 - 191,076,724UniSTSRGSC3.4
Celera2176,359,946 - 176,360,140UniSTS
RH 3.4 Map21219.3UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 39 55
Medium 6 81 190 94 96 94 48 51 95 100 106 77 48
Low 12 168 139 134 12 134 21 32 297 110 153 11 21
Below cutoff 1 52 28 28 28 4 95 32 32 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000040210   ⟹   ENSRNOP00000039602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2183,825,994 - 183,832,048 (-)Ensembl
RefSeq Acc Id: NM_001123469   ⟹   NP_001116941
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82186,520,468 - 186,520,863 (-)NCBI
mRatBN7.22183,831,601 - 183,831,996 (-)NCBI
Rnor_6.02198,411,955 - 198,412,350 (-)NCBI
Rnor_5.02217,897,714 - 217,898,109 (-)NCBI
RGSC_v3.42191,075,740 - 191,076,135 (-)RGD
Celera2176,359,156 - 176,359,551 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001116941   ⟸   NM_001123469
- UniProtKB: Q5BM23 (UniProtKB/Swiss-Prot),   Q7M0E8 (UniProtKB/Swiss-Prot),   P62804 (UniProtKB/Swiss-Prot),   A6KLQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000039602   ⟸   ENSRNOT00000040210
Protein Domains
TATA box binding protein associated factor (TAF)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62804-F1-model_v2 AlphaFold P62804 1-103 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691578
Promoter ID:EPDNEW_R2102
Type:single initiation site
Name:Hist1h2ao_1
Description:histone cluster 1, H2ao
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02198,412,350 - 198,412,410EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307448 AgrOrtholog
BioCyc Gene G2FUF-52042 BioCyc
Ensembl Genes ENSRNOG00000032224 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000054017 UniProtKB/Swiss-Prot
  ENSRNOG00000063552 UniProtKB/Swiss-Prot
  ENSRNOG00000064025 UniProtKB/Swiss-Prot
  ENSRNOG00000065263 UniProtKB/Swiss-Prot
  ENSRNOG00000066473 UniProtKB/Swiss-Prot
  ENSRNOG00000067648 UniProtKB/Swiss-Prot
  ENSRNOG00000070513 UniProtKB/Swiss-Prot
  ENSRNOG00000070706 UniProtKB/Swiss-Prot
  ENSRNOG00055005264 UniProtKB/Swiss-Prot
  ENSRNOG00055005480 UniProtKB/Swiss-Prot
  ENSRNOG00055005484 UniProtKB/Swiss-Prot
  ENSRNOG00055005492 UniProtKB/Swiss-Prot
  ENSRNOG00055005500 UniProtKB/Swiss-Prot
  ENSRNOG00055026675 UniProtKB/Swiss-Prot
  ENSRNOG00055026687 UniProtKB/Swiss-Prot
  ENSRNOG00055032934 UniProtKB/Swiss-Prot
  ENSRNOG00060009485 UniProtKB/Swiss-Prot
  ENSRNOG00060009491 UniProtKB/Swiss-Prot
  ENSRNOG00060014042 UniProtKB/Swiss-Prot
  ENSRNOG00060014373 UniProtKB/Swiss-Prot
  ENSRNOG00060015093 UniProtKB/Swiss-Prot
  ENSRNOG00060015121 UniProtKB/Swiss-Prot
  ENSRNOG00060015156 UniProtKB/Swiss-Prot
  ENSRNOG00060015197 UniProtKB/Swiss-Prot
  ENSRNOG00065012047 UniProtKB/Swiss-Prot
  ENSRNOG00065012051 UniProtKB/Swiss-Prot
  ENSRNOG00065022859 UniProtKB/Swiss-Prot
  ENSRNOG00065022881 UniProtKB/Swiss-Prot
  ENSRNOG00065022907 UniProtKB/Swiss-Prot
  ENSRNOG00065022983 UniProtKB/Swiss-Prot
  ENSRNOG00065023002 UniProtKB/Swiss-Prot
  ENSRNOG00065032701 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000040210 ENTREZGENE
  ENSRNOT00000040210.5 UniProtKB/Swiss-Prot
  ENSRNOT00000080490.2 UniProtKB/Swiss-Prot
  ENSRNOT00000088408.2 UniProtKB/Swiss-Prot
  ENSRNOT00000105806.1 UniProtKB/Swiss-Prot
  ENSRNOT00000106060.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107328.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112120.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112947.1 UniProtKB/Swiss-Prot
  ENSRNOT00000114507.1 UniProtKB/Swiss-Prot
  ENSRNOT00000115294.1 UniProtKB/Swiss-Prot
  ENSRNOT00000117583.1 UniProtKB/Swiss-Prot
  ENSRNOT00000120238.1 UniProtKB/Swiss-Prot
  ENSRNOT00055008443 UniProtKB/Swiss-Prot
  ENSRNOT00055008813 UniProtKB/Swiss-Prot
  ENSRNOT00055008816 UniProtKB/Swiss-Prot
  ENSRNOT00055008824 UniProtKB/Swiss-Prot
  ENSRNOT00055008834 UniProtKB/Swiss-Prot
  ENSRNOT00055046044 UniProtKB/Swiss-Prot
  ENSRNOT00055046060 UniProtKB/Swiss-Prot
  ENSRNOT00055056961 UniProtKB/Swiss-Prot
  ENSRNOT00060016012 UniProtKB/Swiss-Prot
  ENSRNOT00060016023 UniProtKB/Swiss-Prot
  ENSRNOT00060024023 UniProtKB/Swiss-Prot
  ENSRNOT00060024561 UniProtKB/Swiss-Prot
  ENSRNOT00060025863 UniProtKB/Swiss-Prot
  ENSRNOT00060025920 UniProtKB/Swiss-Prot
  ENSRNOT00060025973 UniProtKB/Swiss-Prot
  ENSRNOT00060026053 UniProtKB/Swiss-Prot
  ENSRNOT00065019583 UniProtKB/Swiss-Prot
  ENSRNOT00065019590 UniProtKB/Swiss-Prot
  ENSRNOT00065039049 UniProtKB/Swiss-Prot
  ENSRNOT00065039088 UniProtKB/Swiss-Prot
  ENSRNOT00065039131 UniProtKB/Swiss-Prot
  ENSRNOT00065039256 UniProtKB/Swiss-Prot
  ENSRNOT00065039296 UniProtKB/Swiss-Prot
  ENSRNOT00065056230 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CENP-T/H4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H4_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAF_TATA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291152 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:295277 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:364723 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:64627 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 295277 ENTREZGENE
PANTHER HISTONE H4 UniProtKB/Swiss-Prot
  HISTONE H4 UniProtKB/Swiss-Prot
  HISTONE H4 UniProtKB/TrEMBL
  HISTONE H4 UniProtKB/TrEMBL
Pfam CENP-T_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen H4c14 PhenoGen
PRINTS HISTONEH4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HISTONE_H4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032224 RatGTEx
  ENSRNOG00000054017 RatGTEx
  ENSRNOG00000063552 RatGTEx
  ENSRNOG00000064025 RatGTEx
  ENSRNOG00000065263 RatGTEx
  ENSRNOG00000066473 RatGTEx
  ENSRNOG00000067648 RatGTEx
  ENSRNOG00000070513 RatGTEx
  ENSRNOG00000070706 RatGTEx
  ENSRNOG00055005264 RatGTEx
  ENSRNOG00055005480 RatGTEx
  ENSRNOG00055005484 RatGTEx
  ENSRNOG00055005492 RatGTEx
  ENSRNOG00055005500 RatGTEx
  ENSRNOG00055026675 RatGTEx
  ENSRNOG00055026687 RatGTEx
  ENSRNOG00055032934 RatGTEx
  ENSRNOG00060009485 RatGTEx
  ENSRNOG00060009491 RatGTEx
  ENSRNOG00060014042 RatGTEx
  ENSRNOG00060014373 RatGTEx
  ENSRNOG00060015093 RatGTEx
  ENSRNOG00060015121 RatGTEx
  ENSRNOG00060015156 RatGTEx
  ENSRNOG00060015197 RatGTEx
  ENSRNOG00065012047 RatGTEx
  ENSRNOG00065012051 RatGTEx
  ENSRNOG00065022859 RatGTEx
  ENSRNOG00065022881 RatGTEx
  ENSRNOG00065022907 RatGTEx
  ENSRNOG00065022983 RatGTEx
  ENSRNOG00065023002 RatGTEx
  ENSRNOG00065032701 RatGTEx
SMART SM00417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Histone-fold UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6KLQ0 ENTREZGENE, UniProtKB/TrEMBL
  H4_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5BM23 ENTREZGENE
  Q7M0E8 ENTREZGENE
UniProt Secondary P02304 UniProtKB/Swiss-Prot
  P02305 UniProtKB/Swiss-Prot
  Q5BM23 UniProtKB/Swiss-Prot
  Q7M0E8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 H4c14  H4 clustered histone 14  Hist2h4  histone cluster 2, H4  Name and Symbol changed 629549 APPROVED
2008-04-30 Hist2h4  histone cluster 2, H4   Hist2h4_predicted  histone cluster 2, H4 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-07 Hist2h4_predicted  histone cluster 2, H4 (predicted)    histone 2, H4 (predicted)  Name updated 1299863 APPROVED
2005-01-12 Hist2h4_predicted  histone 2, H4 (predicted)      Symbol and Name status set to approved 70820 APPROVED