H4c14 (H4 clustered histone 14) - Rat Genome Database

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Gene: H4c14 (H4 clustered histone 14) Rattus norvegicus
Analyze
Symbol: H4c14 (Ensembl: Hist1h4m)
Name: H4 clustered histone 14 (Ensembl:histone cluster 1, H4m)
RGD ID: 1307448
Description: Predicted to be a structural constituent of chromatin. Predicted to be involved in negative regulation of megakaryocyte differentiation and nucleosome assembly. Predicted to be located in nucleus. Predicted to be part of CENP-A containing nucleosome. Orthologous to several human genes including H4C2 (H4 clustered histone 2); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH thapsigargin; 2-hydroxypropanoic acid (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: H4c16; H4c2; H4f16; Hist1h4b; Hist1h4m; Hist2h4; Hist4h4; histone 2, H4; histone cluster 2, H4; histone H4; LOC295277
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,520,468 - 186,520,863 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1747,400,471 - 47,470,855 (-)EnsemblGRCr8
GRCr8 Ensembl1741,797,152 - 41,806,539 (+)EnsemblGRCr8
GRCr8 Ensembl4171,403,627 - 171,403,938 (-)EnsemblGRCr8
GRCr8 Ensembl1741,953,594 - 41,958,964 (-)EnsemblGRCr8
mRatBN7.22183,831,601 - 183,831,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,825,994 - 183,832,048 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2191,495,168 - 191,495,563 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,294,310 - 189,294,705 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,127,704 - 184,128,099 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,411,955 - 198,412,350 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,411,955 - 198,412,350 (-)Ensemblrn6Rnor6.0
Rnor_5.02217,897,714 - 217,898,109 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42191,075,740 - 191,076,135 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2176,359,156 - 176,359,551 (-)NCBICelera
RGSC_v3.12191,038,548 - 191,038,860 (-)NCBI
Cytogenetic Map2q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1706721   PMID:14585971   PMID:14718166   PMID:18474616   PMID:19135898   PMID:19199708   PMID:19946888   PMID:20458337   PMID:20498094   PMID:21630459   PMID:21636898   PMID:22368283  
PMID:22658674   PMID:22681889   PMID:23376485   PMID:23533145   PMID:23979707   PMID:24625528   PMID:24699735   PMID:25615412  


Genomics

Comparative Map Data
H4c14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,520,468 - 186,520,863 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1747,400,471 - 47,470,855 (-)EnsemblGRCr8
GRCr8 Ensembl1741,797,152 - 41,806,539 (+)EnsemblGRCr8
GRCr8 Ensembl4171,403,627 - 171,403,938 (-)EnsemblGRCr8
GRCr8 Ensembl1741,953,594 - 41,958,964 (-)EnsemblGRCr8
mRatBN7.22183,831,601 - 183,831,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,825,994 - 183,832,048 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2191,495,168 - 191,495,563 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,294,310 - 189,294,705 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,127,704 - 184,128,099 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,411,955 - 198,412,350 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,411,955 - 198,412,350 (-)Ensemblrn6Rnor6.0
Rnor_5.02217,897,714 - 217,898,109 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42191,075,740 - 191,076,135 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2176,359,156 - 176,359,551 (-)NCBICelera
RGSC_v3.12191,038,548 - 191,038,860 (-)NCBI
Cytogenetic Map2q34NCBI
H4C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,026,896 - 26,027,283 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,025,802 - 26,027,283 (-)Ensemblhg38GRCh38
GRCh37626,027,124 - 26,027,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,135,103 - 26,135,459 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34626,135,102 - 26,135,459NCBI
Celera627,254,348 - 27,254,704 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef625,970,187 - 25,970,543 (-)NCBIHuRef
CHM1_1626,029,397 - 26,029,753 (-)NCBICHM1_1
T2T-CHM13v2.0625,892,832 - 25,893,219 (-)NCBIT2T-CHM13v2.0
LOC100992212
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,670,608 - 40,673,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,672,040 - 36,674,619 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,858,656 - 25,860,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,518,248 - 26,518,752 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,173,609 - 15,173,920 (-)EnsemblpanPan2panpan1.1
PanPan1.1 Ensembl626,700,268 - 26,700,579 (+)EnsemblpanPan2panpan1.1
PanPan1.1 Ensembl626,513,070 - 26,513,381 (+)EnsemblpanPan2panpan1.1
H4C14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,129,585 - 59,130,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,129,682 - 59,129,993 (+)EnsemblcanFam3CanFam3.1
LOC106145261
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,732,895 - 1,733,315 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366711,888,128 - 1,888,666 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H4C2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,223,441 - 46,230,105 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604425,961,511 - 25,967,441 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in H4c14
3 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:84
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000040210
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat

Markers in Region
RH132342  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82186,522,050 - 186,522,271 (+)Marker Load Pipeline
mRatBN7.22183,833,183 - 183,833,404 (+)MAPPERmRatBN7.2
Rnor_6.02198,413,538 - 198,413,758NCBIRnor6.0
Rnor_5.02217,899,297 - 217,899,517UniSTSRnor5.0
RGSC_v3.42191,077,323 - 191,077,543UniSTSRGSC3.4
Celera2176,360,739 - 176,360,959UniSTS
RH 3.4 Map21219.3UniSTS
Cytogenetic Map2q34UniSTS
RH142719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22183,832,390 - 183,832,585 (+)MAPPERmRatBN7.2
Rnor_6.02198,412,745 - 198,412,939NCBIRnor6.0
Rnor_5.02217,898,504 - 217,898,698UniSTSRnor5.0
RGSC_v3.42191,076,530 - 191,076,724UniSTSRGSC3.4
Celera2176,359,946 - 176,360,140UniSTS
RH 3.4 Map21219.3UniSTS
Cytogenetic Map2q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
26 88 313 589 396 418 256 227 256 1260 631 5 525 278 310 162 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000040210   ⟹   ENSRNOP00000039602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2183,825,994 - 183,832,048 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105806   ⟹   ENSRNOP00000093704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1741,797,179 - 41,799,993 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106060   ⟹   ENSRNOP00000091116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1741,797,152 - 41,801,261 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107328   ⟹   ENSRNOP00000087795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1741,953,594 - 41,958,964 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112120   ⟹   ENSRNOP00000079614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1747,400,471 - 47,452,756 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117583   ⟹   ENSRNOP00000080971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1741,797,169 - 41,806,539 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000128894   ⟹   ENSRNOP00000103827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1747,400,471 - 47,470,855 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157059   ⟹   ENSRNOP00000111764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1747,400,471 - 47,401,113 (-)Ensembl
RefSeq Acc Id: NM_001123469   ⟹   NP_001116941
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82186,520,468 - 186,520,863 (-)NCBI
mRatBN7.22183,831,601 - 183,831,996 (-)NCBI
Rnor_6.02198,411,955 - 198,412,350 (-)NCBI
Rnor_5.02217,897,714 - 217,898,109 (-)NCBI
RGSC_v3.42191,075,740 - 191,076,135 (-)RGD
Celera2176,359,156 - 176,359,551 (-)RGD
Sequence:
RefSeq Acc Id: NP_001116941   ⟸   NM_001123469
- UniProtKB: Q5BM23 (UniProtKB/Swiss-Prot),   Q7M0E8 (UniProtKB/Swiss-Prot),   P62804 (UniProtKB/Swiss-Prot),   A6KLQ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039602   ⟸   ENSRNOT00000040210
Ensembl Acc Id: ENSRNOP00000091116   ⟸   ENSRNOT00000106060
Ensembl Acc Id: ENSRNOP00000080971   ⟸   ENSRNOT00000117583
Ensembl Acc Id: ENSRNOP00000103827   ⟸   ENSRNOT00000128894
Ensembl Acc Id: ENSRNOP00000093704   ⟸   ENSRNOT00000105806
Ensembl Acc Id: ENSRNOP00000079614   ⟸   ENSRNOT00000112120
Ensembl Acc Id: ENSRNOP00000087795   ⟸   ENSRNOT00000107328
Ensembl Acc Id: ENSRNOP00000111764   ⟸   ENSRNOT00000157059
Protein Domains
TATA box binding protein associated factor (TAF)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62804-F1-model_v2 AlphaFold P62804 1-103 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691578
Promoter ID:EPDNEW_R2102
Type:single initiation site
Name:Hist1h2ao_1
Description:histone cluster 1, H2ao
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02198,412,350 - 198,412,410EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307448 AgrOrtholog
BioCyc Gene G2FUF-52042 BioCyc
Ensembl Genes ENSRNOG00000032224 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000054017 UniProtKB/Swiss-Prot
  ENSRNOG00000063552 UniProtKB/Swiss-Prot
  ENSRNOG00000064025 UniProtKB/Swiss-Prot
  ENSRNOG00000065263 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000066473 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000067648 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000070513 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000070706 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000040210.5 UniProtKB/Swiss-Prot
  ENSRNOT00000080490.2 UniProtKB/Swiss-Prot
  ENSRNOT00000088408.2 UniProtKB/Swiss-Prot
  ENSRNOT00000105806.1 UniProtKB/Swiss-Prot
  ENSRNOT00000106060.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107328.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112120.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112947.1 UniProtKB/Swiss-Prot
  ENSRNOT00000114507.1 UniProtKB/Swiss-Prot
  ENSRNOT00000115294.1 UniProtKB/Swiss-Prot
  ENSRNOT00000117583.1 UniProtKB/Swiss-Prot
  ENSRNOT00000120238.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot
InterPro CENP-T/H4_C UniProtKB/Swiss-Prot
  Histone-fold UniProtKB/Swiss-Prot
  Histone_H4 UniProtKB/Swiss-Prot
  Histone_H4_CS UniProtKB/Swiss-Prot
  TAF_TATA-bd UniProtKB/Swiss-Prot
KEGG Report rno:291152 UniProtKB/Swiss-Prot
  rno:295277 UniProtKB/Swiss-Prot
  rno:64627 UniProtKB/Swiss-Prot
NCBI Gene 295277 ENTREZGENE
PANTHER HISTONE H4 UniProtKB/Swiss-Prot
Pfam CENP-T_C UniProtKB/Swiss-Prot
PhenoGen H4c14 PhenoGen
PRINTS HISTONEH4 UniProtKB/Swiss-Prot
PROSITE HISTONE_H4 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000032224 RatGTEx
  ENSRNOG00000054017 RatGTEx
  ENSRNOG00000063552 RatGTEx
  ENSRNOG00000064025 RatGTEx
  ENSRNOG00000065263 RatGTEx
  ENSRNOG00000066473 RatGTEx
  ENSRNOG00000067648 RatGTEx
  ENSRNOG00000070513 RatGTEx
  ENSRNOG00000070706 RatGTEx
SMART SM00417 UniProtKB/Swiss-Prot
  TAF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot
UniProt A6KLQ0 ENTREZGENE, UniProtKB/TrEMBL
  H4_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5BM23 ENTREZGENE
  Q7M0E8 ENTREZGENE
UniProt Secondary P02304 UniProtKB/Swiss-Prot
  P02305 UniProtKB/Swiss-Prot
  Q5BM23 UniProtKB/Swiss-Prot
  Q7M0E8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 H4c14  H4 clustered histone 14  Hist2h4  histone cluster 2, H4  Name and Symbol changed 629549 APPROVED
2008-04-30 Hist2h4  histone cluster 2, H4   Hist2h4_predicted  histone cluster 2, H4 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-07 Hist2h4_predicted  histone cluster 2, H4 (predicted)    histone 2, H4 (predicted)  Name updated 1299863 APPROVED
2005-01-12 Hist2h4_predicted  histone 2, H4 (predicted)      Symbol and Name status set to approved 70820 APPROVED