Pnisr (PNN interacting serine and arginine rich protein) - Rat Genome Database

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Gene: Pnisr (PNN interacting serine and arginine rich protein) Rattus norvegicus
Analyze
Symbol: Pnisr
Name: PNN interacting serine and arginine rich protein
RGD ID: 1307395
Description: Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be active in nuclear speck and presynaptic active zone. Orthologous to human PNISR (PNN interacting serine and arginine rich protein); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 7,12-dimethyltetraphene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: arginine/serine-rich protein PNISR; LOC297942; MGC109235; PNN-interacting serine/arginine-rich protein; RGD1307395; serine/arginine-rich splicing factor 18; Sfrs18; similar to SR rich protein; splicing factor, arginine/serine-rich 18; Srsf18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8540,190,214 - 40,219,619 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl540,192,735 - 40,219,611 (+)EnsemblGRCr8
mRatBN7.2535,395,965 - 35,422,852 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl535,395,965 - 35,422,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx537,520,302 - 37,547,305 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0539,113,030 - 39,140,033 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0539,052,540 - 39,079,543 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0535,991,028 - 36,017,952 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl535,991,068 - 36,017,944 (+)Ensemblrn6Rnor6.0
Rnor_5.0540,646,030 - 40,672,914 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4536,598,493 - 36,625,381 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera534,409,952 - 34,436,836 (+)NCBICelera
RGSC_v3.1536,620,291 - 36,624,309 (+)NCBI
Cytogenetic Map5q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
7,12-dimethyltetraphene  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
atrazine  (EXP)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
capsaicin  (EXP)
carbon nanotube  (ISO)
chloroprene  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
diazinon  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dimethylarsinous acid  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
nefazodone  (EXP)
nickel dichloride  (ISO)
nimesulide  (EXP)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
resorcinol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22681889  


Genomics

Comparative Map Data
Pnisr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8540,190,214 - 40,219,619 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl540,192,735 - 40,219,611 (+)EnsemblGRCr8
mRatBN7.2535,395,965 - 35,422,852 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl535,395,965 - 35,422,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx537,520,302 - 37,547,305 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0539,113,030 - 39,140,033 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0539,052,540 - 39,079,543 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0535,991,028 - 36,017,952 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl535,991,068 - 36,017,944 (+)Ensemblrn6Rnor6.0
Rnor_5.0540,646,030 - 40,672,914 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4536,598,493 - 36,625,381 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera534,409,952 - 34,436,836 (+)NCBICelera
RGSC_v3.1536,620,291 - 36,624,309 (+)NCBI
Cytogenetic Map5q21NCBI
PNISR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38699,398,050 - 99,425,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl699,397,629 - 99,425,335 (-)Ensemblhg38GRCh38
GRCh37699,845,926 - 99,873,184 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36699,954,561 - 99,979,928 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34699,954,923 - 99,969,288NCBI
Celera6100,491,988 - 100,517,359 (-)NCBICelera
Cytogenetic Map6q16.2NCBI
HuRef697,288,208 - 97,313,629 (-)NCBIHuRef
CHM1_16100,110,873 - 100,136,238 (-)NCBICHM1_1
T2T-CHM13v2.06100,572,403 - 100,599,652 (-)NCBIT2T-CHM13v2.0
Pnisr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39421,846,621 - 21,876,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl421,847,583 - 21,876,475 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38421,846,657 - 21,876,475 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl421,847,583 - 21,876,475 (+)Ensemblmm10GRCm38
MGSCv37421,774,730 - 21,803,622 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36421,938,418 - 21,967,310 (+)NCBIMGSCv36mm8
Celera421,592,286 - 21,621,179 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map49.06NCBI
Pnisr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541125,267,923 - 25,297,571 (-)Ensembl
ChiLan1.0NW_00495541125,270,569 - 25,297,571 (-)NCBIChiLan1.0ChiLan1.0
PNISR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25119,446,399 - 119,471,697 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16117,326,267 - 117,352,875 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0697,238,879 - 97,266,110 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16101,121,919 - 101,148,653 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6101,123,534 - 101,137,896 (-)EnsemblpanPan2panpan1.1
PNISR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11257,607,000 - 57,633,631 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1257,610,491 - 57,623,718 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1257,364,834 - 57,391,511 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01258,428,719 - 58,455,250 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1258,428,613 - 58,455,197 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11257,785,442 - 57,812,321 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01257,631,908 - 57,658,581 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01257,877,108 - 57,903,798 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pnisr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494692,548,039 - 92,574,193 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366511,003,471 - 1,029,746 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366511,003,462 - 1,029,590 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNISR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl166,350,969 - 66,381,454 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1166,349,065 - 66,382,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PNISR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11374,446,026 - 74,471,397 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604046,779,097 - 46,806,488 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnisr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248105,584,227 - 5,611,479 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pnisr
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11121,466,796 - 121,494,119 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pnisr
79 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:153
Interacting mature miRNAs:194
Transcripts:ENSRNOT00000061139
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)51373115343590997Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)53113042148841739Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
RH136877  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2535,422,469 - 35,422,689 (+)MAPPERmRatBN7.2
Rnor_6.0536,017,570 - 36,017,789NCBIRnor6.0
Rnor_5.0540,672,532 - 40,672,751UniSTSRnor5.0
RGSC_v3.4536,624,999 - 36,625,218UniSTSRGSC3.4
Celera534,436,454 - 34,436,673UniSTS
RH 3.4 Map5165.8UniSTS
Cytogenetic Map5q21UniSTS
RH139037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21623,171,966 - 23,172,113 (+)MAPPERmRatBN7.2
Rnor_6.01624,913,655 - 24,913,801NCBIRnor6.0
Rnor_5.01624,797,508 - 24,797,654UniSTSRnor5.0
RGSC_v3.41624,885,841 - 24,885,987UniSTSRGSC3.4
Celera1623,294,780 - 23,294,926UniSTS
RH 3.4 Map3192.0UniSTS
Cytogenetic Map5q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000061139   ⟹   ENSRNOP00000057854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl540,192,735 - 40,219,611 (+)Ensembl
mRatBN7.2 Ensembl535,395,965 - 35,422,844 (+)Ensembl
Rnor_6.0 Ensembl535,991,068 - 36,017,944 (+)Ensembl
RefSeq Acc Id: NM_001025274   ⟹   NP_001020445
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8540,192,735 - 40,219,619 (+)NCBI
mRatBN7.2535,395,965 - 35,422,852 (+)NCBI
Rnor_6.0535,991,068 - 36,017,952 (+)NCBI
Rnor_5.0540,646,030 - 40,672,914 (+)NCBI
RGSC_v3.4536,598,493 - 36,625,381 (+)RGD
Celera534,409,952 - 34,436,836 (+)RGD
Sequence:
RefSeq Acc Id: XM_063287295   ⟹   XP_063143365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8540,205,109 - 40,219,619 (+)NCBI
RefSeq Acc Id: XM_063287296   ⟹   XP_063143366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8540,190,214 - 40,206,759 (+)NCBI
RefSeq Acc Id: XM_063287297   ⟹   XP_063143367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8540,190,214 - 40,202,986 (+)NCBI
RefSeq Acc Id: XR_010066349
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8540,190,214 - 40,206,706 (+)NCBI
RefSeq Acc Id: NP_001020445   ⟸   NM_001025274
- UniProtKB: F1MAQ8 (UniProtKB/TrEMBL),   A6IIF0 (UniProtKB/TrEMBL),   A6IIF1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057854   ⟸   ENSRNOT00000061139
RefSeq Acc Id: XP_063143366   ⟸   XM_063287296
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063143367   ⟸   XM_063287297
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063143365   ⟸   XM_063287295
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAQ8-F1-model_v2 AlphaFold F1MAQ8 1-814 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693597
Promoter ID:EPDNEW_R4122
Type:multiple initiation site
Name:Pnisr_1
Description:PNN interacting serine and arginine rich protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0535,991,079 - 35,991,139EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307395 AgrOrtholog
BioCyc Gene G2FUF-41812 BioCyc
Ensembl Genes ENSRNOG00000008782 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061139 ENTREZGENE
  ENSRNOT00000061139.6 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7309546 IMAGE-MGC_LOAD
InterPro PNISR UniProtKB/TrEMBL
KEGG Report rno:297942 UniProtKB/TrEMBL
MGC_CLONE MGC:109235 IMAGE-MGC_LOAD
NCBI Gene 297942 ENTREZGENE
PANTHER PTHR31518 UniProtKB/TrEMBL
Pfam PNISR UniProtKB/TrEMBL
PhenoGen Pnisr PhenoGen
RatGTEx ENSRNOG00000008782 RatGTEx
UniProt A6IIF0 ENTREZGENE, UniProtKB/TrEMBL
  A6IIF1 ENTREZGENE, UniProtKB/TrEMBL
  F1MAQ8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-15 Pnisr  PNN interacting serine and arginine rich protein  Pnisr  PNN-interacting serine/arginine-rich protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Pnisr  PNN-interacting serine/arginine-rich protein  Sfrs18  splicing factor, arginine/serine-rich 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-22 Sfrs18  splicing factor, arginine/serine-rich 18  Pnisr  PNN-interacting serine/arginine-rich protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Srsf18  serine/arginine-rich splicing factor 18  Sfrs18  splicing factor, arginine/serine-rich 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Pnisr  PNN-interacting serine/arginine-rich protein   Srsf18  serine/arginine-rich splicing factor 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sfrs18  splicing factor, arginine/serine-rich 18  RGD1307395  similar to SR rich protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307395  similar to SR rich protein  RGD1307395_predicted  similar to SR rich protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307395_predicted  similar to SR rich protein (predicted)  LOC297942_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC297942_predicted  similar to SR rich protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL