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Gene: Xylb (xylulokinase) Rattus norvegicus

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Symbol:

Xylb

Name:

xylulokinase

RGD ID:

1307372

Description:

Predicted to enable D-xylulokinase activity. Predicted to be involved in xylulose metabolic process. Predicted to be active in cytosol. Orthologous to human XYLB (xylulokinase); PARTICIPATES IN pentose and glucuronate interconversion pathway; INTERACTS WITH (+)-schisandrin B; 2,3,4,7,8-Pentachlorodibenzofuran; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC316067; MGC124790; xylulokinase homolog (H. influenzae); xylulose kinase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	XYLB (xylulokinase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Xylb (xylulokinase homolog (H. influenzae))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Xylb (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	XYLB (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	XYLB (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Xylb (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	XYLB (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	XYLB (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Xylb (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Xylb (xylulokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SEC31B (SEC31 homolog B, COPII component)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	XYLB (xylulokinase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Xylb (xylulokinase homolog (H. influenzae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	xylb (xylulokinase homolog (H. influenzae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R08D7.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R08D7.7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3534	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3544	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	XKS1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	xylb	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	127,971,194 - 128,012,511 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	127,966,100 - 128,006,571 (+)	Ensembl				GRCr8
mRatBN7.2	8	119,093,466 - 119,128,858 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	119,096,029 - 119,128,848 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	124,678,128 - 124,710,751 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	122,877,145 - 122,909,770 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	120,710,647 - 120,743,316 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	128,041,875 - 128,076,951 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	128,044,084 - 128,076,946 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	127,248,438 - 127,283,712 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	124,321,366 - 124,354,135 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	118,247,268 - 118,280,101 (+)	NCBI		Celera
RGSC_v3.1	8	124,340,874 - 124,373,231 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3,4,7,8-Pentachlorodibenzofuran (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buspirone (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDE (ISO)

dibenzofurans (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

gentamycin (EXP)

glafenine (EXP)

hydralazine (ISO)

hydrogen peroxide (ISO)

inulin (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

N-nitrosodiethylamine (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

rotenone (EXP)

silicon dioxide (ISO)

sodium arsenite (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

carbohydrate phosphorylation (IEA)

D-xylose metabolic process (IEA)

xylulose metabolic process (IBA,IEA,ISO,ISS)

Cellular Component

cytosol (IBA)

Molecular Function

ATP binding (IEA)

D-xylulokinase activity (IBA,IEA,ISO,ISS)

kinase activity (IEA)

nucleotide binding (IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

pentose and glucuronate interconversion pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:23179721	PMID:23376485

Genomics

Comparative Map Data

Xylb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	127,971,194 - 128,012,511 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	127,966,100 - 128,006,571 (+)	Ensembl				GRCr8
mRatBN7.2	8	119,093,466 - 119,128,858 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	119,096,029 - 119,128,848 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	124,678,128 - 124,710,751 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	122,877,145 - 122,909,770 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	120,710,647 - 120,743,316 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	128,041,875 - 128,076,951 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	128,044,084 - 128,076,946 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	127,248,438 - 127,283,712 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	124,321,366 - 124,354,135 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	118,247,268 - 118,280,101 (+)	NCBI		Celera
RGSC_v3.1	8	124,340,874 - 124,373,231 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

XYLB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	38,346,785 - 38,453,041 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	38,346,760 - 38,421,348 (+)	Ensembl			hg38	GRCh38
GRCh37	3	38,388,276 - 38,468,677 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	38,363,244 - 38,431,471 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	38,363,243 - 38,431,471	NCBI
Celera	3	38,323,884 - 38,392,347 (+)	NCBI		Celera
Cytogenetic Map	3	p22.2	NCBI
HuRef	3	38,430,197 - 38,498,798 (+)	NCBI		HuRef
CHM1_1	3	38,339,982 - 38,408,211 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	38,352,536 - 38,459,118 (+)	NCBI		T2T-CHM13v2.0

Xylb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	119,186,447 - 119,222,863 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	119,186,447 - 119,222,863 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	119,357,381 - 119,393,797 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	119,357,381 - 119,393,797 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	119,266,499 - 119,302,438 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	119,206,079 - 119,242,018 (+)	NCBI		MGSCv36	mm8
Celera	9	119,826,564 - 119,863,083 (+)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	71.33	NCBI

Xylb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	25,492,505 - 25,528,740 (-)	Ensembl
ChiLan1.0	NW_004955427	25,492,505 - 25,528,674 (-)	NCBI	ChiLan1.0	ChiLan1.0

XYLB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	38,300,532 - 38,381,690 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	38,305,246 - 38,386,454 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	38,244,960 - 38,349,616 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	38,526,968 - 38,631,714 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	38,526,988 - 38,592,086 (+)	Ensembl			panPan2	panpan1.1

XYLB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	8,123,041 - 8,171,803 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	8,122,197 - 8,170,447 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	8,163,344 - 8,213,617 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	8,411,983 - 8,462,247 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	8,412,008 - 8,464,550 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	8,226,162 - 8,276,351 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	8,366,621 - 8,416,906 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	8,360,020 - 8,410,270 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Xylb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	194,586,571 - 194,632,938 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	27,725,937 - 27,767,102 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	27,725,955 - 27,767,319 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

XYLB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	23,173,939 - 23,225,951 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	23,173,855 - 23,225,583 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	25,302,487 - 25,350,851 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

XYLB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	1,003,809 - 1,070,385 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	1,005,340 - 1,069,275 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	9,722,166 - 9,803,123 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Xylb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	2,619,334 - 2,658,967 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	2,616,924 - 2,658,675 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Xylb
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	110,593,154 - 110,625,343 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	194
Count of miRNA genes:	133
Interacting mature miRNAs:	156
Transcripts:	ENSRNOT00000019106
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat

Markers in Region

RH129038

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	119,128,673 - 119,128,828 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	128,076,767 - 128,076,921	NCBI	Rnor6.0
Rnor_5.0	8	127,283,528 - 127,283,682	UniSTS	Rnor5.0
RGSC_v3.4	8	124,353,958 - 124,354,112	UniSTS	RGSC3.4
Celera	8	118,279,924 - 118,280,078	UniSTS
RH 3.4 Map	8	1286.3	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_356707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC101852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019106 ⟹ ENSRNOP00000019106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,966,155 - 128,006,571 (+)	Ensembl
mRatBN7.2 Ensembl	8	119,096,037 - 119,128,848 (+)	Ensembl
Rnor_6.0 Ensembl	8	128,044,084 - 128,076,946 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104648 ⟹ ENSRNOP00000077183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,974,469 - 128,006,571 (+)	Ensembl
mRatBN7.2 Ensembl	8	119,096,077 - 119,128,845 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120248 ⟹ ENSRNOP00000092265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,973,691 - 128,006,571 (+)	Ensembl
mRatBN7.2 Ensembl	8	119,096,029 - 119,128,765 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153110 ⟹ ENSRNOP00000112660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,966,155 - 128,006,571 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158804 ⟹ ENSRNOP00000103064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,966,100 - 128,006,571 (+)	Ensembl

RefSeq Acc Id:

NM_001033704 ⟹ NP_001028876

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,973,798 - 128,006,568 (+)	NCBI
mRatBN7.2	8	119,096,077 - 119,128,851 (+)	NCBI
Rnor_6.0	8	128,044,175 - 128,076,944 (+)	NCBI
Rnor_5.0	8	127,248,438 - 127,283,712 (+)	NCBI
RGSC_v3.4	8	124,321,366 - 124,354,135 (+)	RGD
Celera	8	118,247,268 - 118,280,101 (+)	RGD

Sequence:

show sequence

CCCAAGACCATGGCGGAGCGGGCGGGCCGCCGCTGTTGCCTGGGCTGGGACTTCAGCACGCAGC
AGGTCAAAGTCGTTGCTGTTGATGCAGAGCTGAACGTCTTCTATGAGGACAGTGTGCATTTTGA
CAGAGACCTTCCGGAATTTGGAACTCAGGGCGGTGTCCATGTACACAAGGACAGGCTGACGGTC
ACCTCTCCGGTCCTGATGTGGGTCCAGGCTCTGGACCTGATCCTGGAGAAGATGAAGGCTTCCG
GCTTTGACTTCTCTCAAGTTCTAGCCTTATCTGGGGCAGGCCAGCAACACGGAAGCGTTTACTG
GAAGACTGGAGCCAGCCTGGCGTTGTCAAGCCTGTCACCGGCTCTCCTGTTGCATCAGCAGCTA
CAGGCCTGCTTCTCCGTCAGTGACTGCCCGATATGGATGGACTCCAGTACCACAGCCCAGTGTC
ACCAGCTGGAGGCTGCGGTGGGTGGGGCCCAGGCTCTCAGCTGCCTCACAGGGTCCCGGGCCTA
TGAGCGATTTACGGGGAACCAGATCTCAAAGATTTTCCAGAAGAACCCTGAGGCCTACTCGAAC
TCTGAGAGAATTTCCTTGGTCAGTAGTTTTGCTGCTTCGCTGTTCCTGGGTAGGTACTCGCCCA
TCGACTACAGTGATGGGTCTGGAATGAATTTGTTGCAGATCCAGGAAAAAGTCTGGTCCCAGGC
TTGCCTGGATGCCTGTGCCCCCCATTTGAAGGAGAAGCTGGGTTCACCGGTCCCTTCCTGCTCT
GTTGTGGGAGCCATTTCTTCCTACTACGTTCAGCGCTATGGATTCCCTCCAGGATGCAAAGTGG
TGGCCTTCACTGGGGACAACCCGGCATCACTGGCCGGCATGAGGCTGGAGGAAGGAGATGTTGC
GGTCAGCCTGGGCACCAGTGACACCCTATTTCTCTGGCTCCAAAAGCCCATGCCTGCCTTGGAA
GGGCACATCTTCTGCAACCCAGTGGATGCACGGCAATATATGGCGCTTCTGTGCTTTAAAAATG
GCTCCCTCATGAGAGAGAAGATTCGAGACGAGTCTGCTTCCTGTTCCTGGAACAAGTTCTCTAA
GGCCCTGCAGTCCACTGAGATGGGGAACAACGGAAACTTGGGTTTTTATTTCGATGTCATGGAG
ATCACCCCTGAGATTATCGGGTGCCATAGGTTTAATGCAGATAACATGGAGGTCTCGGCATTCC
CTGGAGATGTGGAGATCCGAGCGCTGGTTGAAGGCCAGTTCATGGCCAAGAGGATTCATGCAGA
AGGCCTAGGCTACCGAATCATGCCTAAGACAAAGATTCTGGCCACGGGAGGAGCCTCTCACAAT
AAAGACATCTTGCAGGTGCTTGCAGATGTTTTTGGGGCCCCTGTGTATGTCATAGACACCACCA
GTTCAGCCTGTGTTGGCTCCGCATACCGAGCCTTTCACGGCCTTGCAGGAGGGACAGGTGTAGC
CTTTTCAGAGGTGGTAAAATCAGCACCACAGCCCAGCCTGGCTGCCACCCCCAACCCAGGAGCT
TCCCAGGTTTATGCAGCCCTTCTCCCTCGATATGCTGAACTGGAACAGAGAATCTTGTCCAAAG
CTCGGGGGCCTCTGGAATGAATTCTTCGGGCCCAGGCACTCTGCTGCCTCCCTGGTGGCACTCG
CTCTCGCCTCCTTGGTCTGAACAGTTCGGCTGTGCTGAACCTGTGGAGTACTCCTGTCCTGTCC
TGAACCATCCTGAAGCCATGACTCCTTGGAGACATGTGGCCTGCATGTCCTGGGATGGAAAAGC
AATTTCTCCTTTTCTGTTTTTCATTCAGGAAAACATGGTAGGGTATGGCCACCAAAGACAATCC
TCTTCCCCTTTCAAAGGGACAAACAGCAGCACAGGGAGAGACTGTCTTTTCCCTGACTCTGACC
ACTCCTCCTTCCTCACCTTCAGCCACCTCCCCTATACTGGAACCGCAATCCTCCATCCTTCCCA
GCAAACCAGACTAAGCCACTTCTCTCCTACCTGTGACTAACCCTCCTGTTTCTGTGGGTGTCTT
CCCAGGGCTCTCGTCTGTCTGTCTGTCTGTCTGTCTGTCTCCATCTTCCCTCCCTATACGCACC
TGGTATAACTTCCCACTCAAGACGACCTTCATGGACCTGGTGAATATCCTTCCTTCCCCTCCCC
CAGCCCTGTACAGAGACTGCCTGACTGGGGTTTCCTGGGTGCCCTGGCTGGGTATCTATCTCCC
AGGCTAAACACTTCCGGGTTCTTCCGTATTTCATTGTAGTTCACATGATGACAGAATTATGTGT
TTTGAGAAATTTCTAAATTCTGGCTTTCTTTTTTTGAGGGGGCGGGTAGGGGTTATCTCCTGCT
GCCCTCAAACTTTCTTTGCAGCGAAAAGTGACCTTAAACTTAAGCTTTCTTCCTGCCACCATCT
CCCAAGTATGTGCCACCACACCTGGTTTATGCCATACCAGGGATTGAACCCACAGCCTCACGTA
TTCTAGGCAAACACTCTACCTGCTGAGCCGCACGCCTGGCCTGGGTTTCCTTTTTAACTGGCAT
ACTTTCACCTCTCACTTCCACGTATCCTACTATGCTTGAGCAGATGCCAAGTCTTCCCTCTCTA
CCCCTGCTTCACACTTTTCTTGGTGGTGATCTCACCCCCTCATCACCCCCTGGAGGTTTCCTCT
GCTACAAGGCCATGCTGAACTCAGGACTCGACCACTGGATCTGACACAGTGGCGAGATGTTGCA
GACAGGAGTGAGACCAGGGTCAGAGCAGTGACTGCTGGGAAATCAAAAGACAGAGATGGAAAGA
GACTTGTGTCTAGACATGAGGTCGCTTGGAAGGCTCGGTGGGGGGGTGGGGGGGAAGAAGCAAC
CATAACCATCGTGCCCACAACAAACCCACAGTGCAGAAGGAAACGCCTCTGGGACATTGCTTGT
TACAGAGATTTTATACTGCAAAGGCATCTGGGACCGCACAACAGTTAACCAGGACGACATTCCA
ACAGATCTTCCCTACAGTAAATCAGACAATTTTGGATGAAAAAGGCCTCCGTAGGTGACAAGTG
AAAAAACAAATCCAAATGGAAACTCGGCAAGTCTATGTGAGAAGACACTGAACGGAAGGATAGA
CCGTGACAGATCTGGACAATTTACGGCACATCAAAGAGGAGGGAGGCGCCGAGGGAAGTTCAGG
GAGGCACCAGAAAAGAAGGGAGGAGAATAAAGACAAGATCCCTGTTGATACTTAGAACTTCCCA
AAATAAACAAAATTTTGAAAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006244096 ⟹ XP_006244158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,973,809 - 128,006,575 (+)	NCBI
mRatBN7.2	8	119,095,995 - 119,128,858 (+)	NCBI
Rnor_6.0	8	128,044,093 - 128,075,357 (+)	NCBI
Rnor_5.0	8	127,248,438 - 127,283,712 (+)	NCBI

Sequence:

show sequence

AGTCTGGGCGCCGGAGCGCAGCGACAGTCTCGCCGCCTCGGGACACATGGACGCACGGACGCAC
AGACGGACGGTGGGAACCCCCAAGACCATGGCGGAGCGGGCGGGCCGCCGCTGTTGCCTGGGCT
GGGACTTCAGCACGCAGCAGGTCAAAGTCGTTGCTGTTGATGCAGAGCTGAACGTCTTCTATGA
GGACAGTGTGCATTTTGACAGAGACCTTCCGGAATTTGGGCTCTGGACCTGATCCTGGAGAAGA
TGAAGGCTTCCGGCTTTGACTTCTCTCAAGTTCTAGCCTTATCTGGGGCAGGCCAGCAACACGG
AAGCGTTTACTGGAAGACTGGAGCCAGCCTGGCGTTGTCAAGCCTGTCACCGGCTCTCCTGTTG
CATCAGCAGCTACAGGCCTGCTTCTCCGTCAGTGACTGCCCGATATGGATGGACTCCAGTACCA
CAGCCCAGTGTCACCAGCTGGAGGCTGCGGTGGGTGGGGCCCAGGCTCTCAGCTGCCTCACAGG
GTCCCGGGCCTATGAGCGATTTACGGGGAACCAGATCTCAAAGATTTTCCAGAAGAACCCTGAG
GCCTACTCGAACTCTGAGAGAATTTCCTTGGTCAGTAGTTTTGCTGCTTCGCTGTTCCTGGGTG
GGTACTCGCCCATCGACTACAGTGATGGGTCTGGAATGAATTTGTTGCAGATCCAGGAAAAAGT
CTGGTCCCAGGCTTGCCTGGATGCCTGTGCCCCCCATTTGAAGGAGAAGCTGGGTTCACCGGTC
CCTTCCTGCTCTGTTGTGGGAGCCATTTCTTCCTACTACGTTCAGCGCTATGGATTCCCTCCAG
GATGCAAAGTGGTGGCCTTCACTGGGGACAACCCGGCATCACTGGCCGGCATGAGGCTGGAGGA
AGGAGATGTTGCGGTCAGCCTGGGCACCAGCGACACCCTATTTCTCTGGCTCCAAAAGCCCATG
CCTGCCTTGGAAGGGCACATCTTCTGCAACCCAGTGGATGCACGGCAATATATGGCGCTTCTGT
GCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATTCGAGACGAGTCTGCTTCCTGTTCCTGGAA
CAAGTTCTCTAAGGCCCTGCAGTCCACTGAGATGGGGAACAACGGAAACTTGGGTTTTTATTTC
GATGTCATGGAGATCACCCCTGAGATTATCGGGTGCCATAGGTTTAATGCAGATAACATGGAGG
TCTCGGCATTCCCTGGAGATGTGGAGATCCGAGCGCTGGTTGAAGGCCAGTTCATGGCCAAGAG
GATTCATGCAGAAGGCCTAGGCTACCGAATCATGCCTAAGACAAAGATTCTGGCCACGGGAGGA
GCCTCTCACAATAAAGACATCTTGCAGGTGCTTGCAGATGTTTTTGGGGCCCCTGTGTATGTCA
TAGACACCACCAGTTCAGCCTGTGTTGGCTCCGCATACCGAGCCTTTCACGGCCTTGCAGGAGG
GACAGGTGTAGCCTTTTCAGAGGTGGTAAAATCAGCACCACAGCCCAGCCTGGCTGCCACCCCC
AACCCAGGAGCTTCCCAGGTTTATGCAGCCCTTCTCCCTCGATATGCTGAACTGGAACAGAGAA
TCTTGTCCAAAGCTCGGGGGCCTCTGGAATGAATTCTTCGGGCCCAGGCACTCTGCTGCCTCCC
TGGTGGCACTCGCTCTCGCCTCCTTGGTCTGAACAGTTCGGCTGTGCTGAAC

hide sequence

RefSeq Acc Id:

XM_017595698 ⟹ XP_017451187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,971,231 - 128,006,575 (+)	NCBI
mRatBN7.2	8	119,093,489 - 119,127,465 (+)	NCBI
Rnor_6.0	8	128,044,018 - 128,075,558 (+)	NCBI

Sequence:

show sequence

GCGGCGCCAGAGGGCAGTCCCACCTCGTGACTCCAGTCCAGAGTCCTGCCGGGCGTGGCGAGAG
GCGGGCCCTGGAGTCTGGGCGCCGGAGCGCAGCGACAGTCTCGCCGCCTCGGGACACATGGACG
CACGGACGCACAGACGGACGGTGGGAACCCCCAAGACCATGGCGGAGCGGGCGGGCCGCCGCTG
TTGCCTGGGCTGGGACTTCAGCACGCAGCAGGTCAAAGTCGTTGCTGTTGATGCAGAGCTGAAC
GTCTTCTATGAGGACAGTGTGCATTTTGACAGAGACCTTCCGGAATTTGGAACTCAGGGCGGTG
TCCATGTACACAAGGACAGGCTGACGGTCACCTCTCCGGTCCTGATGTGGGTCCAGGCTCTGGA
CCTGATCCTGGAGAAGATGAAGGCTTCCGGCTTTGACTTCTCTCAAGTTCTAGCCTTATCTGGG
GCAGGCCAGCAACACGGAAGCGTTTACTGGAAGACTGGAGCCAGCCTGGCGTTGTCAAGCCTGT
CACCGGCTCTCCTGTTGCATCAGCAGCTACAGGCCTGCTTCTCCGTCAGTGACTGCCCGATATG
GATGGACTCCAGTACCACAGCCCAGTGTCACCAGCTGGAGGCTGCGGTGGGTGGGGCCCAGGCT
CTCAGCTGCCTCACAGGGTCCCGGGCCTATGAGCGATTTACGGGGAACCAGATCTCAAAGATTT
TCCAGAAGAACCCTGAGGCCTACTCGAACTCTGAGAGAATTTCCTTGGTCAGTAGTTTTGCTGC
TTCGCTGTTCCTGGGTGGGTACTCGCCCATCGACTACAGTGATGGGTCTGGAATGAATTTGTTG
CAGATCCAGGAAAAAGTCTGGTCCCAGGCTTGCCTGGATGCCTGTGCCCCCCATTTGAAGGAGA
AGCTGGGTTCACCGGTCCCTTCCTGCTCTGTTGTGGGAGCCATTTCTTCCTACTACGTTCAGCG
CTATGGATTCCCTCCAGGATGCAAAGTGGTGGCCTTCACTGGGGACAACCCGGCATCACTGGCC
GGCATGAGGCTGGAGGAAGGAGATGTTGCGGTCAGCCTGGGCACCAGCGACACCCTATTTCTCT
GGCTCCAAAAGCCCATGCCTGCCTTGGAAGGGCACATCTTCTGCAACCCAGTGGATGCACGGCA
ATATATGGCGCTTCTGTGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATTCGAGACGAGTCT
GCTTCCTGTTCCTGGAACAAGTTCTCTAAGGCCCTGCAGTCCACTGAGATGGGGAACAACGGAA
ACTTGGGTTTTTATTTCGATGTCATGGAGATCACCCCTGAGATTATCGGGTGCCATAGGTTTAA
TGCAGATAACATGGAGGTCTCGGCATTCCCTGGAGATGTGGAGATCCGAGCGCTGGTTGAAGGC
CAGTTCATGGCCAAGAGGATTCATGCAGAAGGCCTAGGCTACCGAATCATGCCTAAGACAAAGA
TTCTGGCCACGGGAGGAGCCTCTCACAATAAAGACATCTTGCAGGTGCTTGCAGATGTTTTTGG
GGCCCCTGTGTATGTCATAGACACCACCAGTTCAGCCTGTGTTGGCTCCGCATACCGAGCCTTT
CACGGTTTATGCAGCCCTTCTCCCTCGATATGCTGAACTGGAACAGAGAATCTTGTCCAAAGCT
CGGGGGCCTCTGGAATGAATTCTTCGGGCCCAGGCACTCTGCTGCCTCCCTGGTGGCACTCGCT
CTCGCCTCCTTGGTCTGAACAGTTCGGCTGTGCTGAACCTGTGGAGTACTCCTGTCCTGTCCTG
AACCATCCTGAAGCCATGACTCCTTGGAGACATGTGGCCTGCATGTCCTGGGATGGAAAAGCAA
TTTCTCCTTTTCTGTTTTTCATTCAGGAAAACATGGTAGGGTATGGCCACCAAAGACAATCCTC
TTCCCCTTTCAAAGGGACAAACAGCAGCACAGGGAGAGACTGTCTTT

hide sequence

RefSeq Acc Id:

XM_017595699 ⟹ XP_017451188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,971,228 - 128,006,575 (+)	NCBI
mRatBN7.2	8	119,093,486 - 119,128,858 (+)	NCBI
Rnor_6.0	8	128,044,018 - 128,076,951 (+)	NCBI

Sequence:

show sequence

GCGGCGCCAGAGGGCAGTCCCACCTCGTGACTCCAGTCCAGAGTCCTGCCGGGCGTGGCGAGAG
GCGGGCCCTGGAGTCTGGGCGCCGGAGCGCAGCGACAGTCTCGCCGCCTCGGGACACATGGACG
CACGGACGCACAGACGGACGGTGGGAACCCCCAAGACCATGGCGGAGCGGGCGGGCCGCCGCTG
TTGCCTGGGCTGGGACTTCAGCACGCAGCAGGTCAAAGTCGTTGCTGTTGATGCAGAGCTGAAC
GTCTTCTATGAGGACAGTGTGCATTTTGACAGAGACCTTCCGGAATTTGGAACTCAGGGCGGTG
TCCATGTACACAAGGACAGGCTGACGGTCACCTCTCCGGTCCTGATGTGGGTCCAGGCTCTGGA
CCTGATCCTGGAGAAGATGAAGGCTTCCGGCTTTGACTTCTCTCAAGTTCTAGCCTTATCTGGG
GCAGGCCAGCAACACGGAAGCGTTTACTGGAAGACTGGAGCCAGCCTGGCGTTGTCAAGCCTGT
CACCGGCTCTCCTGTTGCATCAGCAGCTACAGGCCTGCTTCTCCGTCAGTGACTGCCCGATATG
GATGGACTCCAGTACCACAGCCCAGTGTCACCAGCTGGAGGCTGCGGTGGGTGGGGCCCAGGCT
CTCAGCTGCCTCACAGGGTCCCGGGCCTATGAGCGATTTACGGGGAACCAGATCTCAAAGATTT
TCCAGAAGAACCCTGAGGCCTACTCGAACTCTGAGAGAATTTCCTTGGTCAGTAGTTTTGCTGC
TTCGCTGTTCCTGGGTGGGTACTCGCCCATCGACTACAGTGATGGGTCTGGAATGAATTTGTTG
CAGATCCAGGAAAAAGTCTGGTCCCAGGCTTGCCTGGATGCCTGTGCCCCCCATTTGAAGGAGA
AGCTGGGTTCACCGGTCCCTTCCTGCTCTGTTGTGGGAGCCATTTCTTCCTACTACGTTCAGCG
CTATGGATTCCCTCCAGGATGCAAAGTGGTGGCCTTCACTGGGGACAACCCGGCATCACTGGCC
GGCATGAGGCTGGAGGAAGGAGATGTTGCGGTCAGCCTGGGCACCAGCGACACCCTATTTCTCT
GGCTCCAAAAGCCCATGCCTGCCTTGGAAGGGCACATCTTCTGCAACCCAGTGGATGCACGGCA
ATATATGGCGCTTCTGTGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATTCGAGACGAGTCT
GCTTCCTGTTCCTGGAACAAGTTCTCTAAGGCCCTGCAGTCCACTGAGATGGGGAACAACGGAA
ACTTGGGTTTTTATTTCGATGTCATGGAGATCACCCCTGAGATTATCGGGTGCCATAGGTTTAA
TGCAGATAACATGGAGGTCTCGGCATTCCCTGGAGATGTGGAGATCCGAGCGCTGGTTGAAGGC
CAGTTCATGGCCAAGAGGATTCATGCAGAAGGCCTAGGCTACCGAATCATGCCTAAGACAAAGA
TTCTGGCCACGGGAGGAGCCTCTCACAATAAAGACATCTTGCAGGTTTATGCAGCCCTTCTCCC
TCGATATGCTGAACTGGAACAGAGAATCTTGTCCAAAGCTCGGGGGCCTCTGGAATGAATTCTT
CGGGCCCAGGCACTCTGCTGCCTCCCTGGTGGCACTCGCTCTCGCCTCCTTGGTCTGAACAGTT
CGGCTGTGCTGAACCTGTGGAGTACTCCTGTCCTGTCCTGAACCATCCTGAAGCCATGACTCCT
TGGAGACATGTGGCCTGCATGTCCTGGGATGGAAAAGCAATTTCTCCTTTTCTGTTTTTCATTC
AGGAAAACATGGTAGGGTATGGCCACCAAAGACAATCCTCTTCCCCTTTCAAAGGGACAAACAG
CAGCACAGGGAGAGACTGTCTTTTCCCTGACTCTGACCACTCCTCCTTCCTCACCTTCAGCCAC
CTCCCCTATACTGGAACCGCAATCCTCCATCCTTCCCAGCAAACCAGACTAAGCCACTTCTCTC
CTACCTGTGACTAACCCTCCTGTTTCTGTGGGTGTCTTCCCAGGGCTCTCGTCTGTCTGTCTGT
CTGTCTGTCTGTCTGTCTCCATCTTCCCTCCCTATACGCACCTGGTATAACTTCCCACTCAAGA
CGACCTTCATGGACCTGGTGAATATCCTTCCTTCCCCTCCCCCAGCCCTGTACAGAGACTGCCT
GACTGGGGTTTCCTGGGTGCCCTGGCTGGGTATCTATCTCCCAGGCTAAACACTTCCGGGTTCT
TCCGTATTTCATTGTAGTTCACATGATGACAGAATTATGTGTTTTGAGAAATTTCTAAATTCTG
GCTTTCTTTTTTTGAGGGGGCGGGTAGGGGTTATCTCCTGCTGCCCTCAAACTTTCTTTGCAGC
GAAAAGTGACCTTAAACTTAAGCTTTCTTCCTGCCACCATCTCCCAAGTATGTGCCACCACACC
TGGTTTATGCCATACCAGGGATTGAACCCACAGCCTCACGTATTCTAGGCAAACACTCTACCTG
CTGAGCCGCACGCCTGGCCTGGGTTTCCTTTTTAACTGGCATACTTTCACCTCTCACTTCCACG
TATCCTACTATGCTTGAGCAGATGCCAAGTCTTCCCTCTCTACCCCTGCTTCACACTTTTCTTG
GTGGTGATCTCACCCCCTCATCACCCCCTGGAGGTTTCCTCTGCTACAAGGCCATGCTGAACTC
AGGACTCGACCACTGGATCTGACACAGTGGCGAGATGTTGCAGACAGGAGTGAGACCAGGGTCA
GAGCAGTGACTGCTGGGAAATCAAAAGACAGAGATGGAAAGAGACTTGTGTCTAGACATGAGGT
CGCTTGGAAGGCTCGGTGTGGGGGTGGGGGGGAAGAAGCAACCATAACCATCGTGCCCACAACA
AACCCACAGTGCAGAAGGAAACGCCTCTGGGACATTGCTTGTTACAGAGATTTTATACTGCAAA
GGCATCTGGGACCGCACAACAGTTAACCAGGACGACATTCCAACAGATCTTCCCTACAGTAAAT
CAGACAATTTTGGATGAAAAAGGCCTCCGTAGGTGACAAGTGAAAAAACAAATCCAAATGGAAA
CTCGGCAAGTCTATGTGAGAAGACACTGAACGGAAGGATAGACCGTGACAGATCTGGACAATTT
ACGGCACATCAAAGAGGAGGGAGGCGCCGAGGGAAGTTCAGGGAGGCACCAGAAAAGAAGGGAG
GAGAATAAAGACAAGATCCCTGTTGATACTTAGAACTTCCCAAAATAAACAAAATTTTGAAAAC
ACCTAAAA

hide sequence

RefSeq Acc Id:

XM_039081640 ⟹ XP_038937568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,971,242 - 128,006,575 (+)	NCBI
mRatBN7.2	8	119,093,499 - 119,128,858 (+)	NCBI

RefSeq Acc Id:

XM_039081644 ⟹ XP_038937572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,971,194 - 127,990,292 (+)	NCBI
mRatBN7.2	8	119,093,470 - 119,112,697 (+)	NCBI

RefSeq Acc Id:

XM_063265656 ⟹ XP_063121726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,971,216 - 128,012,511 (+)	NCBI

RefSeq Acc Id:

XM_063265657 ⟹ XP_063121727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,973,507 - 128,006,575 (+)	NCBI

RefSeq Acc Id:

XM_063265658 ⟹ XP_063121728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,973,449 - 128,006,575 (+)	NCBI

RefSeq Acc Id:

XR_356707

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,971,216 - 128,000,467 (+)	NCBI
mRatBN7.2	8	119,093,476 - 119,122,731 (+)	NCBI
Rnor_6.0	8	128,041,875 - 128,069,759 (+)	NCBI
Rnor_5.0	8	127,248,438 - 127,283,712 (+)	NCBI

Sequence:

show sequence

GAGTTGGACGACAGACCGCGGCGCCAGAGGGCAGTCCCACCTCGTGACTCCAGTCCAGAGTCCT
GCCGGGCGTGGCGAGAGGCGGGCCCTGGAGTCTGGGCGCCGGAGCGCAGCGACAGTCTCGCCGC
CTCGGGACACATGGACGCACGGACGCACAGACGGACGGTGGGAACCCCCAAGACCATGGCGGAG
CGGGCGGGCCGCCGCTGTTGCCTGGGCTGGGACTTCAGCACGCAGCAGGTCAAAGTCGTTGCTG
TTGATGCAGAGCTGAACGTCTTCTATGAGGACAGTGTGCATTTTGACAGAGACCTTCCGGAATT
TGGAACTCAGGGCGGTGTCCATGTACACAAGGACAGGCTGACGGTCACCTCTCCGGTCCTGATG
TGGGTCCAGGCTCTGGACCTGATCCTGGAGAAGATGAAGGCTTCCGGCTTTGACTTCTCTCAAG
TTCTAGCCTTATCTGGGGCAGGCCAGCAACACGGAAGCGTTTACTGGAAGACTGGAGCCAGCCT
GGCGTTGTCAAGCCTGTCACCGGCTCTCCTGTTGCATCAGCAGCTACAGGCCTGCTTCTCCGTC
AGTGACTGCCCGATATGGATGGACTCCAGTACCACAGCCCAGTGTCACCAGCTGGAGGCTGCGG
TGGGTGGGGCCCAGGCTCTCAGCTGCCTCACAGGGTCCCGGGCCTATGAGCGATTTACGGGGAA
CCAGATCTCAAAGATTTTCCAGAAGAACCCTGAGGCCTACTCGAACTCTGAGAGAATTTCCTTG
GTCAGTAGTTTTGCTGCTTCGCTGTTCCTGGGTGGGTACTCGCCCATCGACTACAGTGATGGGT
CTGGAATGAATTTGTTGCAGATCCAGGAAAAAGTCTGGTCCCAGGCTTGCCTGGATGCCTGTGC
CCCCCATTTGAAGGAGAAGCTGGGTTCACCGGTCCCTTCCTGCTCTGTTGTGGGAGCCATTTCT
TCCTACTACGTTCAGCGCTATGGATTCCCTCCAGGATGCAAAGTGGTGGCCTTCACTGGGGACA
ACCCGGCATCACTGGCCGGCATGAGGCTGGAGGAAGGAGATGTTGCGGTCAGCCTGGGCACCAG
CGACACCCTATTTCTCTGGCTCCAAAAGCCCATGCCTGCCTTGGAAGGGCACATCTTCTGCAAC
CCAGTGGATGCACGGCAATATATGGCGCTTCTGTGCTTTAAAAATGGCTCCCTCATGAGAGAGA
AGATTCGAGACGAGTCTGCTTCCTGTTCCTGGAACAAGTTCTCTAAGGCCCTGCAGTCCACTGA
GATGGGGAACAACGGAAACTTGGGTTTTTATTTCGATGTCATGGAGATCACCCCTGAGATTATC
GGGTGCCATAGGTTTAATGCAGATAACATGGAGCCGGAGCTTGCCCAGGGGATTCTCCAGTTCC
ACCTTGGAGGCTCCAAACCCAGGTGCTCTTGCTACACCACAAGCGCTCTGACTTCCAGCTGTCT
TCCCAGCCCCAGACACATCCGCTGTGGGCTATAGGACTACATTCATTCACTCTGGTGTGGAGCC
CTGCTTAACAACTGGCTTTTGGCACTCTGCTAAAGGGGTCTCGGCATTCCCTGGAGATGTGGAG
ATCCGAGCGCTGGTTGAAGGCCAGTTCATGGCCAAGAGGATTCATGCAGAAGGCCTAGGCTACC
GA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028876	(Get FASTA)	NCBI Sequence Viewer
	XP_006244158	(Get FASTA)	NCBI Sequence Viewer
	XP_017451187	(Get FASTA)	NCBI Sequence Viewer
	XP_017451188	(Get FASTA)	NCBI Sequence Viewer
	XP_038937568	(Get FASTA)	NCBI Sequence Viewer
	XP_038937572	(Get FASTA)	NCBI Sequence Viewer
	XP_063121726	(Get FASTA)	NCBI Sequence Viewer
	XP_063121727	(Get FASTA)	NCBI Sequence Viewer
	XP_063121728	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI01853	(Get FASTA)	NCBI Sequence Viewer
	EDL76914	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019106
	ENSRNOP00000092265
	ENSRNOP00000112660
GenBank Protein	Q3MIF4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001028876 ⟸ NM_001033704

- UniProtKB:

Q3MIF4 (UniProtKB/Swiss-Prot), A0A8I5Y795 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAERAGRRCCLGWDFSTQQVKVVAVDAELNVFYEDSVHFDRDLPEFGTQGGVHVHKDRLTVTSP
VLMWVQALDLILEKMKASGFDFSQVLALSGAGQQHGSVYWKTGASLALSSLSPALLLHQQLQAC
FSVSDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQISKIFQKNPEAYSNSER
ISLVSSFAASLFLGRYSPIDYSDGSGMNLLQIQEKVWSQACLDACAPHLKEKLGSPVPSCSVVG
AISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDVAVSLGTSDTLFLWLQKPMPALEGHI
FCNPVDARQYMALLCFKNGSLMREKIRDESASCSWNKFSKALQSTEMGNNGNLGFYFDVMEITP
EIIGCHRFNADNMEVSAFPGDVEIRALVEGQFMAKRIHAEGLGYRIMPKTKILATGGASHNKDI
LQVLADVFGAPVYVIDTTSSACVGSAYRAFHGLAGGTGVAFSEVVKSAPQPSLAATPNPGASQV
YAALLPRYAELEQRILSKARGPLE

hide sequence

RefSeq Acc Id:	XP_006244158 ⟸ XM_006244096
- Peptide Label:	isoform X6
- UniProtKB:	Q3MIF4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MKASGFDFSQVLALSGAGQQHGSVYWKTGASLALSSLSPALLLHQQLQACFSVSDCPIWMDSST TAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQISKIFQKNPEAYSNSERISLVSSFAASLFLG GYSPIDYSDGSGMNLLQIQEKVWSQACLDACAPHLKEKLGSPVPSCSVVGAISSYYVQRYGFPP GCKVVAFTGDNPASLAGMRLEEGDVAVSLGTSDTLFLWLQKPMPALEGHIFCNPVDARQYMALL CFKNGSLMREKIRDESASCSWNKFSKALQSTEMGNNGNLGFYFDVMEITPEIIGCHRFNADNME VSAFPGDVEIRALVEGQFMAKRIHAEGLGYRIMPKTKILATGGASHNKDILQVLADVFGAPVYV IDTTSSACVGSAYRAFHGLAGGTGVAFSEVVKSAPQPSLAATPNPGASQVYAALLPRYAELEQR ILSKARGPLE hide sequence

RefSeq Acc Id:

XP_017451188 ⟸ XM_017595699

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDARTHRRTVGTPKTMAERAGRRCCLGWDFSTQQVKVVAVDAELNVFYEDSVHFDRDLPEFGTQ
GGVHVHKDRLTVTSPVLMWVQALDLILEKMKASGFDFSQVLALSGAGQQHGSVYWKTGASLALS
SLSPALLLHQQLQACFSVSDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQIS
KIFQKNPEAYSNSERISLVSSFAASLFLGGYSPIDYSDGSGMNLLQIQEKVWSQACLDACAPHL
KEKLGSPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDVAVSLGTSDTL
FLWLQKPMPALEGHIFCNPVDARQYMALLCFKNGSLMREKIRDESASCSWNKFSKALQSTEMGN
NGNLGFYFDVMEITPEIIGCHRFNADNMEVSAFPGDVEIRALVEGQFMAKRIHAEGLGYRIMPK
TKILATGGASHNKDILQVYAALLPRYAELEQRILSKARGPLE

hide sequence

RefSeq Acc Id:	XP_017451187 ⟸ XM_017595698
- Peptide Label:	isoform X3
- UniProtKB:	G3V7T5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDARTHRRTVGTPKTMAERAGRRCCLGWDFSTQQVKVVAVDAELNVFYEDSVHFDRDLPEFGTQ GGVHVHKDRLTVTSPVLMWVQALDLILEKMKASGFDFSQVLALSGAGQQHGSVYWKTGASLALS SLSPALLLHQQLQACFSVSDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQIS KIFQKNPEAYSNSERISLVSSFAASLFLGGYSPIDYSDGSGMNLLQIQEKVWSQACLDACAPHL KEKLGSPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDVAVSLGTSDTL FLWLQKPMPALEGHIFCNPVDARQYMALLCFKNGSLMREKIRDESASCSWNKFSKALQSTEMGN NGNLGFYFDVMEITPEIIGCHRFNADNMEVSAFPGDVEIRALVEGQFMAKRIHAEGLGYRIMPK TKILATGGASHNKDILQVLADVFGAPVYVIDTTSSACVGSAYRAFHGLCSPSPSIC hide sequence

Ensembl Acc Id:

ENSRNOP00000019106 ⟸ ENSRNOT00000019106

RefSeq Acc Id:	XP_038937572 ⟸ XM_039081644
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038937568 ⟸ XM_039081640
- Peptide Label:	isoform X1
- UniProtKB:	Q3MIF4 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000092265 ⟸ ENSRNOT00000120248

Ensembl Acc Id:

ENSRNOP00000077183 ⟸ ENSRNOT00000104648

RefSeq Acc Id:	XP_063121726 ⟸ XM_063265656
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063121728 ⟸ XM_063265658
- Peptide Label:	isoform X5
- UniProtKB:	Q3MIF4 (UniProtKB/Swiss-Prot), A6I3W3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121727 ⟸ XM_063265657
- Peptide Label:	isoform X5
- UniProtKB:	Q3MIF4 (UniProtKB/Swiss-Prot), A6I3W3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000103064 ⟸ ENSRNOT00000158804

Ensembl Acc Id:

ENSRNOP00000112660 ⟸ ENSRNOT00000153110

Protein Domains

Carbohydrate kinase FGGY C-terminal Carbohydrate kinase FGGY N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3MIF4-F1-model_v2	AlphaFold	Q3MIF4	1-536	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696371

Promoter ID:

EPDNEW_R6896

Type:

initiation region

Name:

Xylb_1

Description:

xylulokinase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	128,044,118 - 128,044,178	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307372	AgrOrtholog
BioCyc Gene	G2FUF-28789	BioCyc
Ensembl Genes	ENSRNOG00000014168	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000019106	ENTREZGENE
	ENSRNOT00000120248	ENTREZGENE
	ENSRNOT00000153110	ENTREZGENE
Gene3D-CATH	3.30.420.40	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7930657	IMAGE-MGC_LOAD
InterPro	ATPase_NBD	UniProtKB/Swiss-Prot
	Carb_kinase_FGGY	UniProtKB/Swiss-Prot
	Carb_kinase_FGGY_C	UniProtKB/Swiss-Prot
	Carb_kinase_FGGY_N	UniProtKB/Swiss-Prot
	D-XK_euk	UniProtKB/Swiss-Prot
KEGG Report	rno:316067	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124790	IMAGE-MGC_LOAD
NCBI Gene	316067	ENTREZGENE
PANTHER	SUGAR KINASE	UniProtKB/Swiss-Prot
	XYLULOSE KINASE	UniProtKB/Swiss-Prot
Pfam	FGGY_C	UniProtKB/Swiss-Prot
	FGGY_N	UniProtKB/Swiss-Prot
PhenoGen	Xylb	PhenoGen
PIRSF	GlpK	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014168	RatGTEx
Superfamily-SCOP	SSF53067	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y795	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AH82_RAT	UniProtKB/TrEMBL
	A0ABK0LMW5_RAT	UniProtKB/TrEMBL
	A0ABK0LNQ9_RAT	UniProtKB/TrEMBL
	A6I3W3	ENTREZGENE, UniProtKB/TrEMBL
	G3V7T5	ENTREZGENE, UniProtKB/TrEMBL
	Q3MIF4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-07	Xylb	xylulokinase	Xylb	xylulokinase homolog (H. influenzae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Xylb	xylulokinase homolog (H. influenzae)	Xylb_predicted	xylulokinase homolog (H. influenzae) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Xylb_predicted	xylulokinase homolog (H. influenzae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)