Abca8a (ATP-binding cassette, subfamily A (ABC1), member 8a) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Abca8a (ATP-binding cassette, subfamily A (ABC1), member 8a) Rattus norvegicus
Analyze
Symbol: Abca8a
Name: ATP-binding cassette, subfamily A (ABC1), member 8a
RGD ID: 1307333
Description: Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in plasma membrane. Orthologous to several human genes including ABCA8 (ATP binding cassette subfamily A member 8); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP-binding cassette sub-family A member 8-A; ATP-binding cassette, sub-family A (ABC1), member 8a; LOC303638
RGD Orthologs
Human
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Candidate Gene For: Bp310
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81095,501,798 - 95,571,770 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1095,501,798 - 95,571,873 (-)EnsemblGRCr8
mRatBN7.21095,002,334 - 95,072,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,002,334 - 95,072,375 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10100,061,062 - 100,130,944 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01099,524,079 - 99,593,964 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01094,932,443 - 95,002,322 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01098,319,480 - 98,390,484 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1098,319,480 - 98,390,384 (-)Ensemblrn6Rnor6.0
Rnor_5.01098,033,517 - 98,102,763 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41099,477,700 - 99,544,364 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1093,653,023 - 93,722,364 (-)NCBICelera
RGSC_v3.11099,492,705 - 99,563,360 (-)NCBI
Cytogenetic Map10q32.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation

Genomics

Comparative Map Data
Abca8a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81095,501,798 - 95,571,770 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1095,501,798 - 95,571,873 (-)EnsemblGRCr8
mRatBN7.21095,002,334 - 95,072,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,002,334 - 95,072,375 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10100,061,062 - 100,130,944 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01099,524,079 - 99,593,964 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01094,932,443 - 95,002,322 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01098,319,480 - 98,390,484 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1098,319,480 - 98,390,384 (-)Ensemblrn6Rnor6.0
Rnor_5.01098,033,517 - 98,102,763 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41099,477,700 - 99,544,364 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1093,653,023 - 93,722,364 (-)NCBICelera
RGSC_v3.11099,492,705 - 99,563,360 (-)NCBI
Cytogenetic Map10q32.1NCBI
ABCA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381769,148,007 - 69,244,848 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1769,147,214 - 69,244,846 (-)Ensemblhg38GRCh38
GRCh371767,144,148 - 67,240,989 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361764,655,743 - 64,752,551 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341764,655,743 - 64,752,551NCBI
Celera1763,715,654 - 63,812,482 (-)NCBICelera
Cytogenetic Map17q24.3NCBI
HuRef1762,529,479 - 62,626,316 (-)NCBIHuRef
CHM1_11767,208,693 - 67,305,453 (-)NCBICHM1_1
T2T-CHM13v2.01770,024,572 - 70,121,455 (-)NCBIT2T-CHM13v2.0
ABCA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21985,169,053 - 85,249,036 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,989,894 - 90,070,229 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01763,077,215 - 63,157,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11768,465,139 - 68,545,012 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1768,465,959 - 68,541,553 (-)EnsemblpanPan2panpan1.1
LOC100626206
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11211,165,186 - 11,212,630 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21211,351,929 - 11,397,022 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCA10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11652,372,998 - 52,446,057 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607723,271,629 - 23,348,635 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Abca8a
551 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:545
Count of miRNA genes:230
Interacting mature miRNAs:283
Transcripts:ENSRNOT00000005665, ENSRNOT00000065947
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
631558Bp137Blood pressure QTL 1370.013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)109522434497335592Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)109090424595604677Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108780775896620484Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106724133498502431Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106184349698710773Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)109112727095604677Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)107369533997272278Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1081012077101828297Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)9090424595604677Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)9090424595604677Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)109090424595604677Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)109090424595604677Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)109090424595604677Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)108890050196620484Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)1061843496100198886Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1061843496100198886Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108450348796432422Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107674313395604677Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108450348796432422Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat

Markers in Region
D10Chm47  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21095,053,380 - 95,053,621 (+)MAPPERmRatBN7.2
Rnor_6.01098,370,919 - 98,371,159NCBIRnor6.0
Rnor_5.01098,084,247 - 98,084,487UniSTSRnor5.0
RGSC_v3.41099,530,034 - 99,530,274UniSTSRGSC3.4
Celera1093,703,681 - 93,703,917UniSTS
Cytogenetic Map10q32.1UniSTS
RH46167  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81095,507,472 - 95,507,718 (+)Marker Load Pipeline
mRatBN7.21095,008,008 - 95,008,254 (+)MAPPERmRatBN7.2
Rnor_6.01098,325,155 - 98,325,400NCBIRnor6.0
Rnor_5.01098,039,192 - 98,039,437UniSTSRnor5.0
RGSC_v3.41099,483,377 - 99,483,622UniSTSRGSC3.4
Celera1093,658,698 - 93,658,943UniSTS
Cytogenetic Map10q32.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 12 61 151 87 86 55 34 55 6 268 128 11 130 65 88 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000005665   ⟹   ENSRNOP00000005665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1095,501,798 - 95,569,877 (-)Ensembl
mRatBN7.2 Ensembl1095,002,334 - 95,070,412 (-)Ensembl
Rnor_6.0 Ensembl1098,319,487 - 98,388,637 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000065947   ⟹   ENSRNOP00000059943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1095,501,798 - 95,571,873 (-)Ensembl
mRatBN7.2 Ensembl1095,002,334 - 95,072,375 (-)Ensembl
Rnor_6.0 Ensembl1098,319,480 - 98,390,384 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000127016   ⟹   ENSRNOP00000111036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1095,501,798 - 95,571,651 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000140030   ⟹   ENSRNOP00000107654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1095,503,134 - 95,571,651 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160040   ⟹   ENSRNOP00000111430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1095,501,798 - 95,571,746 (-)Ensembl
RefSeq Acc Id: NM_001281824   ⟹   NP_001268753
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81095,501,798 - 95,571,651 (-)NCBI
mRatBN7.21095,002,334 - 95,072,188 (-)NCBI
Rnor_6.01098,319,480 - 98,390,384 (-)NCBI
Rnor_5.01098,033,517 - 98,102,763 (-)NCBI
Celera1093,653,023 - 93,722,364 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006247611   ⟹   XP_006247673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81095,501,813 - 95,571,770 (-)NCBI
mRatBN7.21095,002,347 - 95,072,315 (-)NCBI
Rnor_6.01098,319,495 - 98,390,484 (-)NCBI
Rnor_5.01098,033,517 - 98,102,763 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063269226   ⟹   XP_063125296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81095,508,246 - 95,567,182 (-)NCBI
RefSeq Acc Id: XR_005489862
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81095,502,376 - 95,567,182 (-)NCBI
mRatBN7.21095,002,987 - 95,067,720 (-)NCBI
RefSeq Acc Id: NP_001268753   ⟸   NM_001281824
- UniProtKB: D3ZCF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247673   ⟸   XM_006247611
- Peptide Label: isoform X1
- UniProtKB: D3ZCF8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059943   ⟸   ENSRNOT00000065947
Ensembl Acc Id: ENSRNOP00000005665   ⟸   ENSRNOT00000005665
RefSeq Acc Id: XP_063125296   ⟸   XM_063269226
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000107654   ⟸   ENSRNOT00000140030
Ensembl Acc Id: ENSRNOP00000111430   ⟸   ENSRNOT00000160040
Ensembl Acc Id: ENSRNOP00000111036   ⟸   ENSRNOT00000127016
Protein Domains
ABC transporter

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCF8-F1-model_v2 AlphaFold D3ZCF8 1-1624 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697865
Promoter ID:EPDNEW_R8389
Type:multiple initiation site
Name:Abca8a_1
Description:ATP-binding cassette, subfamily A , member 8a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01098,390,395 - 98,390,455EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307333 AgrOrtholog
BioCyc Gene G2FUF-22820 BioCyc
Ensembl Genes ENSRNOG00000004147 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005665 ENTREZGENE
  ENSRNOT00000005665.8 UniProtKB/TrEMBL
  ENSRNOT00000065947 ENTREZGENE
  ENSRNOT00000065947.6 UniProtKB/TrEMBL
  ENSRNOT00000127016.1 UniProtKB/TrEMBL
  ENSRNOT00000140030.1 UniProtKB/TrEMBL
  ENSRNOT00000160040.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC2_TM UniProtKB/TrEMBL
  ABC_A UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  R2_ABCA1-4-like UniProtKB/TrEMBL
NCBI Gene 303638 ENTREZGENE
PANTHER PTHR19229 UniProtKB/TrEMBL
  PTHR19229:SF186 UniProtKB/TrEMBL
Pfam ABC2_membrane_3 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
  R1_ABCA1 UniProtKB/TrEMBL
PhenoGen Abca8a PhenoGen
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004147 RatGTEx
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0ABK0LU37_RAT UniProtKB/TrEMBL
  A0ABK0LZ04_RAT UniProtKB/TrEMBL
  A0ABK0M7H1_RAT UniProtKB/TrEMBL
  D3ZCF8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXD2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-11-16 Abca8a  ATP-binding cassette, subfamily A (ABC1), member 8a  Abca8a  ATP-binding cassette, sub-family A (ABC1), member 8a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Abca8a  ATP-binding cassette, sub-family A (ABC1), member 8a   Abca8a_predicted  ATP-binding cassette, sub-family A (ABC1), member 8a (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Abca8a_predicted  ATP-binding cassette, sub-family A (ABC1), member 8a (predicted)      Symbol and Name status set to approved 70820 APPROVED