Josd2 (Josephin domain containing 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Josd2 (Josephin domain containing 2) Rattus norvegicus
Analyze
Symbol: Josd2
Name: Josephin domain containing 2
RGD ID: 1307305
Description: Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within protein deubiquitination. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human JOSD2 (Josephin domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Josephin-2; LOC292876; RGD1307305; similar to RIKEN cDNA 1110007C05
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,097,382 - 104,101,271 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,097,376 - 104,101,277 (+)EnsemblGRCr8
mRatBN7.2194,960,867 - 94,964,751 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,961,107 - 94,964,749 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,346,439 - 100,350,150 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,819,087 - 108,822,798 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,109,508 - 102,113,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,473,426 - 100,477,352 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,473,643 - 100,477,351 (+)Ensemblrn6Rnor6.0
Rnor_5.01101,538,824 - 101,542,739 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4194,945,365 - 94,949,076 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,223,704 - 89,227,415 (+)NCBICelera
RGSC_v3.1195,023,475 - 95,027,187 (+)NCBI
Cytogenetic Map1q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:15326124   PMID:21118805  


Genomics

Comparative Map Data
Josd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,097,382 - 104,101,271 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,097,376 - 104,101,277 (+)EnsemblGRCr8
mRatBN7.2194,960,867 - 94,964,751 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,961,107 - 94,964,749 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,346,439 - 100,350,150 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,819,087 - 108,822,798 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,109,508 - 102,113,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,473,426 - 100,477,352 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,473,643 - 100,477,351 (+)Ensemblrn6Rnor6.0
Rnor_5.01101,538,824 - 101,542,739 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4194,945,365 - 94,949,076 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,223,704 - 89,227,415 (+)NCBICelera
RGSC_v3.1195,023,475 - 95,027,187 (+)NCBI
Cytogenetic Map1q22NCBI
JOSD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,505,998 - 50,511,191 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,505,995 - 50,514,675 (-)Ensemblhg38GRCh38
GRCh371951,009,255 - 51,014,448 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,701,071 - 55,706,157 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1948,060,563 - 48,065,647 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,345,979 - 47,351,343 (-)NCBIHuRef
CHM1_11951,010,993 - 51,016,448 (-)NCBICHM1_1
T2T-CHM13v2.01953,594,861 - 53,600,045 (-)NCBIT2T-CHM13v2.0
Josd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,117,404 - 44,121,082 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,117,404 - 44,121,086 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38744,467,980 - 44,471,658 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,467,980 - 44,471,662 (+)Ensemblmm10GRCm38
MGSCv37751,723,426 - 51,727,021 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36744,336,098 - 44,339,693 (+)NCBIMGSCv36mm8
MGSCv36734,036,620 - 34,040,712 (+)NCBIMGSCv36mm8
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
Josd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955559655,178 - 659,412 (+)Ensembl
ChiLan1.0NW_004955559655,178 - 659,412 (+)NCBIChiLan1.0ChiLan1.0
JOSD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,573,528 - 56,578,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,494,259 - 58,499,495 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,470,849 - 47,476,000 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,370,253 - 56,375,475 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,370,253 - 56,375,479 (-)EnsemblpanPan2panpan1.1
JOSD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,234,452 - 106,238,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,235,411 - 106,238,321 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1105,808,072 - 105,811,881 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01106,746,034 - 106,749,843 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,746,244 - 106,749,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,418,098 - 106,421,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,059,704 - 106,063,514 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,900,362 - 106,904,172 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Josd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,443,314 - 22,447,486 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889319,286 - 324,463 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936889319,304 - 323,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JOSD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,334,419 - 55,340,288 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1655,335,466 - 55,341,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,174,381 - 51,189,993 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JOSD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,560,214 - 43,570,612 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,560,216 - 43,570,641 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236668897,332 - 12,048 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Josd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12155,061,437 - 155,065,066 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Josd2
43 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:110
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000026379
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026379   ⟹   ENSRNOP00000026379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,097,422 - 104,101,277 (+)Ensembl
mRatBN7.2 Ensembl194,961,107 - 94,964,744 (+)Ensembl
Rnor_6.0 Ensembl1100,473,643 - 100,477,351 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100873   ⟹   ENSRNOP00000078316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,097,422 - 104,101,124 (+)Ensembl
mRatBN7.2 Ensembl194,961,107 - 94,964,602 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110083   ⟹   ENSRNOP00000087491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl194,961,775 - 94,964,602 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118261   ⟹   ENSRNOP00000091200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,097,376 - 104,101,277 (+)Ensembl
mRatBN7.2 Ensembl194,961,775 - 94,964,749 (+)Ensembl
RefSeq Acc Id: NM_001106256   ⟹   NP_001099726
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,560 - 104,101,271 (+)NCBI
mRatBN7.2194,961,038 - 94,964,749 (+)NCBI
Rnor_6.01100,473,643 - 100,477,352 (+)NCBI
Rnor_5.01101,538,824 - 101,542,739 (+)NCBI
RGSC_v3.4194,945,365 - 94,949,076 (+)RGD
Celera189,223,704 - 89,227,415 (+)RGD
Sequence:
RefSeq Acc Id: XM_006228996   ⟹   XP_006229058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,382 - 104,101,271 (+)NCBI
mRatBN7.2194,960,894 - 94,964,751 (+)NCBI
Rnor_6.01100,473,426 - 100,477,352 (+)NCBI
Rnor_5.01101,538,824 - 101,542,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006228997   ⟹   XP_006229059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,389 - 104,101,271 (+)NCBI
mRatBN7.2194,960,895 - 94,964,751 (+)NCBI
Rnor_6.01100,473,426 - 100,477,352 (+)NCBI
Rnor_5.01101,538,824 - 101,542,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006228998   ⟹   XP_006229060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,434 - 104,101,271 (+)NCBI
mRatBN7.2194,960,902 - 94,964,751 (+)NCBI
Rnor_6.01100,473,426 - 100,477,352 (+)NCBI
Rnor_5.01101,538,824 - 101,542,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104786   ⟹   XP_038960714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,395 - 104,101,271 (+)NCBI
mRatBN7.2194,960,867 - 94,964,749 (+)NCBI
RefSeq Acc Id: XM_039104787   ⟹   XP_038960715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,098,349 - 104,101,271 (+)NCBI
mRatBN7.2194,961,830 - 94,964,751 (+)NCBI
RefSeq Acc Id: XM_063283926   ⟹   XP_063139996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,395 - 104,101,271 (+)NCBI
RefSeq Acc Id: XM_063283928   ⟹   XP_063139998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,395 - 104,101,271 (+)NCBI
RefSeq Acc Id: XM_063283931   ⟹   XP_063140001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,097,395 - 104,101,271 (+)NCBI
RefSeq Acc Id: NP_001099726   ⟸   NM_001106256
- UniProtKB: A6JAP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229058   ⟸   XM_006228996
- Peptide Label: isoform X1
- UniProtKB: D4AD44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229059   ⟸   XM_006228997
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006229060   ⟸   XM_006228998
- Peptide Label: isoform X3
- UniProtKB: A6JAP3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026379   ⟸   ENSRNOT00000026379
RefSeq Acc Id: XP_038960714   ⟸   XM_039104786
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038960715   ⟸   XM_039104787
- Peptide Label: isoform X7
- UniProtKB: A6JAP7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000087491   ⟸   ENSRNOT00000110083
Ensembl Acc Id: ENSRNOP00000078316   ⟸   ENSRNOT00000100873
Ensembl Acc Id: ENSRNOP00000091200   ⟸   ENSRNOT00000118261
RefSeq Acc Id: XP_063139996   ⟸   XM_063283926
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063140001   ⟸   XM_063283931
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139998   ⟸   XM_063283928
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GJF0 (UniProtKB/TrEMBL)
Protein Domains
Josephin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AD44-F1-model_v2 AlphaFold D4AD44 1-188 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689997
Promoter ID:EPDNEW_R521
Type:initiation region
Name:Josd2_1
Description:Josephin domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01100,473,666 - 100,473,726EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307305 AgrOrtholog
BioCyc Gene G2FUF-59770 BioCyc
Ensembl Genes ENSRNOG00000019442 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026379 ENTREZGENE
  ENSRNOT00000026379.7 UniProtKB/TrEMBL
  ENSRNOT00000100873.2 UniProtKB/TrEMBL
  ENSRNOT00000118261 ENTREZGENE
  ENSRNOT00000118261.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.70.40 UniProtKB/TrEMBL
InterPro JOSD1/2 UniProtKB/TrEMBL
  Josephin UniProtKB/TrEMBL
KEGG Report rno:292876 UniProtKB/TrEMBL
NCBI Gene 292876 ENTREZGENE
PANTHER JOSEPHIN-2 UniProtKB/TrEMBL
  PTHR13291 UniProtKB/TrEMBL
Pfam Josephin UniProtKB/TrEMBL
PhenoGen Josd2 PhenoGen
PROSITE JOSEPHIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019442 RatGTEx
SMART Josephin UniProtKB/TrEMBL
UniProt A0A8I5ZKN3_RAT UniProtKB/TrEMBL
  A0A8I6GJF0 ENTREZGENE, UniProtKB/TrEMBL
  A6JAP3 ENTREZGENE, UniProtKB/TrEMBL
  A6JAP7 ENTREZGENE, UniProtKB/TrEMBL
  D4AD44 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Josd2  Josephin domain containing 2   Josd2_predicted  Josephin domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Josd2_predicted  Josephin domain containing 2 (predicted)  RGD1307305_predicted  similar to RIKEN cDNA 1110007C05 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1307305_predicted  similar to RIKEN cDNA 1110007C05 (predicted)  LOC292876_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC292876_predicted  similar to RIKEN cDNA 1110007C05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL