Pigx (phosphatidylinositol glycan anchor biosynthesis, class X) - Rat Genome Database

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Gene: Pigx (phosphatidylinositol glycan anchor biosynthesis, class X) Rattus norvegicus
Analyze
Symbol: Pigx
Name: phosphatidylinositol glycan anchor biosynthesis, class X
RGD ID: 1307289
Description: Involved in GPI anchor biosynthetic process. Part of glycosylphosphatidylinositol-mannosyltransferase I complex. Orthologous to human PIGX (phosphatidylinositol glycan anchor biosynthesis class X); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ20522; GPI alpha-1,4-mannosyltransferase I, stabilizing subunit; GPI-mannosyltransferase subunit; LOC288041; phosphatidylinositol glycan, class X; phosphatidylinositol-glycan biosynthesis class X protein; Pig-x; RGD1307289; similar to hypothetical protein FLJ20522
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,192,125 - 82,208,062 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1182,192,092 - 82,208,061 (+)EnsemblGRCr8
mRatBN7.21168,687,126 - 68,703,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,687,093 - 68,703,472 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1177,524,191 - 77,540,130 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,186,226 - 70,201,755 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,213,288 - 69,229,226 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,938,388 - 71,954,225 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,938,388 - 71,954,224 (+)Ensemblrn6Rnor6.0
Rnor_5.01175,013,627 - 75,029,485 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41170,508,995 - 70,524,958 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1168,109,572 - 68,125,462 (+)NCBICelera
RGSC_v3.11170,563,550 - 70,582,494 (+)NCBI
Cytogenetic Map11q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mammalian PIG-X and yeast Pbn1p are the essential components of glycosylphosphatidylinositol-mannosyltransferase I. Ashida H, etal., Mol Biol Cell. 2005 Mar;16(3):1439-48. doi: 10.1091/mbc.e04-09-0802. Epub 2005 Jan 5.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Pigx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,192,125 - 82,208,062 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1182,192,092 - 82,208,061 (+)EnsemblGRCr8
mRatBN7.21168,687,126 - 68,703,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,687,093 - 68,703,472 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1177,524,191 - 77,540,130 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,186,226 - 70,201,755 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,213,288 - 69,229,226 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,938,388 - 71,954,225 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,938,388 - 71,954,224 (+)Ensemblrn6Rnor6.0
Rnor_5.01175,013,627 - 75,029,485 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41170,508,995 - 70,524,958 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1168,109,572 - 68,125,462 (+)NCBICelera
RGSC_v3.11170,563,550 - 70,582,494 (+)NCBI
Cytogenetic Map11q22NCBI
PIGX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,712,377 - 196,736,007 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,639,775 - 196,736,007 (+)Ensemblhg38GRCh38
GRCh373196,439,248 - 196,462,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363197,923,643 - 197,947,275 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343197,927,624 - 197,950,077NCBI
Celera3195,019,754 - 195,043,917 (+)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3193,735,931 - 193,759,454 (+)NCBIHuRef
CHM1_13196,410,436 - 196,434,105 (+)NCBICHM1_1
T2T-CHM13v2.03199,431,769 - 199,455,384 (+)NCBIT2T-CHM13v2.0
Pigx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,903,234 - 31,918,545 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,903,234 - 31,918,558 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381632,084,416 - 32,099,727 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1632,084,416 - 32,099,740 (-)Ensemblmm10GRCm38
MGSCv371632,084,502 - 32,099,813 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361632,004,171 - 32,019,478 (-)NCBIMGSCv36mm8
Celera1632,580,549 - 32,595,838 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1622.4NCBI
Pigx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542012,825,438 - 12,853,658 (+)NCBIChiLan1.0ChiLan1.0
PIGX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22194,582,327 - 194,605,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13194,587,041 - 194,610,630 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03194,056,597 - 194,080,183 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13203,996,513 - 204,019,511 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,996,539 - 204,017,416 (+)EnsemblpanPan2panpan1.1
PIGX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13329,740,435 - 29,767,931 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3329,692,371 - 29,767,771 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3329,764,080 - 29,791,974 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03329,982,322 - 30,011,868 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3329,984,210 - 30,011,864 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13329,759,562 - 29,789,070 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03329,814,479 - 29,844,016 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03330,437,081 - 30,466,621 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pigx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,571,800 - 124,596,332 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367841,289,671 - 1,312,744 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367841,288,937 - 1,313,469 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13133,389,060 - 133,420,276 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113133,389,198 - 133,420,189 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213143,038,001 - 143,068,626 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIGX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11590,495,273 - 90,514,543 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604164,274,535 - 64,299,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473061,789,911 - 61,813,502 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473061,789,769 - 61,812,875 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pigx
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1416,912,239 - 16,931,496 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pigx
36 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:14
Count of miRNA genes:12
Interacting mature miRNAs:12
Transcripts:ENSRNOT00000043365
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
RH131163  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84117,153,018 - 117,153,204 (+)Marker Load Pipeline
mRatBN7.24115,595,302 - 115,595,488 (+)MAPPERmRatBN7.2
Rnor_6.04113,922,009 - 113,922,194NCBIRnor6.0
Rnor_6.04114,787,737 - 114,787,922NCBIRnor6.0
Rnor_5.04178,606,981 - 178,607,166UniSTSRnor5.0
RGSC_v3.44117,301,290 - 117,301,475UniSTSRGSC3.4
Celera4104,589,820 - 104,590,005UniSTS
Cytogenetic Map11q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000043365   ⟹   ENSRNOP00000042305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1182,192,092 - 82,208,061 (+)Ensembl
mRatBN7.2 Ensembl1168,687,093 - 68,703,067 (+)Ensembl
Rnor_6.0 Ensembl1171,938,388 - 71,954,224 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102113   ⟹   ENSRNOP00000093914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1182,193,809 - 82,208,061 (+)Ensembl
mRatBN7.2 Ensembl1168,688,811 - 68,703,472 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109036   ⟹   ENSRNOP00000082530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1182,192,092 - 82,208,059 (+)Ensembl
mRatBN7.2 Ensembl1168,687,115 - 68,703,472 (+)Ensembl
RefSeq Acc Id: NM_001100651   ⟹   NP_001094121
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81182,192,125 - 82,208,062 (+)NCBI
mRatBN7.21168,687,126 - 68,703,067 (+)NCBI
Rnor_6.01171,938,388 - 71,954,225 (+)NCBI
Rnor_5.01175,013,627 - 75,029,485 (+)NCBI
RGSC_v3.41170,508,995 - 70,524,958 (+)RGD
Celera1168,109,572 - 68,125,462 (+)RGD
Sequence:
RefSeq Acc Id: NP_001094121   ⟸   NM_001100651
- Peptide Label: precursor
- UniProtKB: Q60GF7 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042305   ⟸   ENSRNOT00000043365
Ensembl Acc Id: ENSRNOP00000082530   ⟸   ENSRNOT00000109036
Ensembl Acc Id: ENSRNOP00000093914   ⟸   ENSRNOT00000102113

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60GF7-F1-model_v2 AlphaFold Q60GF7 1-252 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698216
Promoter ID:EPDNEW_R8741
Type:initiation region
Name:Pigx_1
Description:phosphatidylinositol glycan anchor biosynthesis, class X
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01171,938,386 - 71,938,446EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307289 AgrOrtholog
BioCyc Gene G2FUF-21080 BioCyc
Ensembl Genes ENSRNOG00000033623 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000043365 ENTREZGENE
InterPro PIG-X/PBN1 UniProtKB/Swiss-Prot
  PIGX UniProtKB/Swiss-Prot
KEGG Report rno:288041 UniProtKB/Swiss-Prot
NCBI Gene 288041 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS X PROTEIN UniProtKB/Swiss-Prot
  PTHR28650 UniProtKB/Swiss-Prot
Pfam PIG-X UniProtKB/Swiss-Prot
PhenoGen Pigx PhenoGen
RatGTEx ENSRNOG00000033623 RatGTEx
SMART PIG-X UniProtKB/Swiss-Prot
UniProt A0A8I5ZTP4_RAT UniProtKB/TrEMBL
  A0A8I6AKY9_RAT UniProtKB/TrEMBL
  A6IRT7_RAT UniProtKB/TrEMBL
  A6IRT8_RAT UniProtKB/TrEMBL
  A6IRT9_RAT UniProtKB/TrEMBL
  A6IRU0_RAT UniProtKB/TrEMBL
  A6IRU4_RAT UniProtKB/TrEMBL
  F1LRM6_RAT UniProtKB/TrEMBL
  PIGX_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Pigx  phosphatidylinositol glycan anchor biosynthesis, class X  Pigx  phosphatidylinositol glycan, class X  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Pigx  phosphatidylinositol glycan, class X  RGD1307289  similar to hypothetical protein FLJ20522  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1307289  similar to hypothetical protein FLJ20522  RGD1307289_predicted  similar to hypothetical protein FLJ20522 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307289_predicted  similar to hypothetical protein FLJ20522 (predicted)  LOC288041_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288041_predicted  similar to hypothetical protein FLJ20522 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL