Ciao1 (cytosolic iron-sulfur assembly component 1) - Rat Genome Database

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Gene: Ciao1 (cytosolic iron-sulfur assembly component 1) Rattus norvegicus
Analyze
Symbol: Ciao1
Name: cytosolic iron-sulfur assembly component 1
RGD ID: 1307285
Description: Predicted to be involved in iron-sulfur cluster assembly and protein maturation. Predicted to be located in cytoplasm. Predicted to be part of MMXD complex and cytosolic [4Fe-4S] assembly targeting complex. Orthologous to human CIAO1 (cytosolic iron-sulfur assembly component 1); PARTICIPATES IN cytosolic iron-sulfur cluster protein assembly pathway; INTERACTS WITH (S)-nicotine; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cytosolic iron-sulfur protein assembly 1; cytosolic iron-sulfur protein assembly 1 homolog; cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae); MGC95143; probable cytosolic iron-sulfur protein assembly protein CIAO1; WD repeat domain 39; WD repeat-containing protein 39; WD40 protein Ciao1; Wdr39
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,913,639 - 134,919,244 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3134,913,172 - 134,979,255 (-)EnsemblGRCr8
mRatBN7.23114,458,671 - 114,465,928 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,458,655 - 114,467,009 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3118,351,884 - 118,357,408 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,947,428 - 126,952,952 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,607,808 - 124,613,332 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,671,778 - 119,677,324 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,671,779 - 119,678,092 (-)Ensemblrn6Rnor6.0
Rnor_5.03126,196,996 - 126,202,542 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43114,740,676 - 114,746,203 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3113,300,999 - 113,306,382 (-)NCBICelera
RGSC_v3.13114,646,248 - 114,651,776 (-)NCBI
Cytogenetic Map3q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosolic [4Fe-4S] assembly targeting complex  (IBA,IEA,ISO,ISS)
MMXD complex  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Biogenesis of cytosolic and nuclear iron-sulfur proteins and their role in genome stability. Paul VD and Lill R, Biochim Biophys Acta. 2015 Jun;1853(6):1528-39. doi: 10.1016/j.bbamcr.2014.12.018. Epub 2015 Jan 10.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:17937914   PMID:20797633   PMID:22678361   PMID:22678362   PMID:23585563   PMID:23891004  


Genomics

Comparative Map Data
Ciao1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,913,639 - 134,919,244 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3134,913,172 - 134,979,255 (-)EnsemblGRCr8
mRatBN7.23114,458,671 - 114,465,928 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,458,655 - 114,467,009 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3118,351,884 - 118,357,408 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,947,428 - 126,952,952 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,607,808 - 124,613,332 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,671,778 - 119,677,324 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,671,779 - 119,678,092 (-)Ensemblrn6Rnor6.0
Rnor_5.03126,196,996 - 126,202,542 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43114,740,676 - 114,746,203 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3113,300,999 - 113,306,382 (-)NCBICelera
RGSC_v3.13114,646,248 - 114,651,776 (-)NCBI
Cytogenetic Map3q36NCBI
CIAO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,266,225 - 96,274,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,266,159 - 96,274,173 (+)Ensemblhg38GRCh38
GRCh37296,931,963 - 96,939,911 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,295,611 - 96,303,644 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34296,353,757 - 96,361,786NCBI
Celera291,373,072 - 91,381,105 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef290,893,381 - 90,901,414 (+)NCBIHuRef
CHM1_1296,936,239 - 96,944,254 (+)NCBICHM1_1
T2T-CHM13v2.0296,772,833 - 96,780,781 (+)NCBIT2T-CHM13v2.0
Ciao1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,082,858 - 127,089,736 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,082,858 - 127,089,736 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382127,240,938 - 127,247,816 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,240,938 - 127,247,816 (-)Ensemblmm10GRCm38
MGSCv372127,066,674 - 127,073,552 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362126,932,379 - 126,939,183 (-)NCBIMGSCv36mm8
Celera2128,480,303 - 128,487,188 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.86NCBI
Ciao1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,822,582 - 3,828,563 (+)Ensembl
ChiLan1.0NW_0049554703,822,606 - 3,828,563 (+)NCBIChiLan1.0ChiLan1.0
CIAO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21232,034,666 - 32,042,638 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A32,037,475 - 32,045,398 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A103,041,509 - 103,049,469 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,189,246 - 97,194,576 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,188,949 - 97,194,576 (+)EnsemblpanPan2panpan1.1
CIAO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,507,136 - 34,512,566 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,508,662 - 34,512,486 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1734,277,047 - 34,282,512 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01735,278,219 - 35,283,798 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,278,225 - 35,283,748 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,407,476 - 34,412,941 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,476,119 - 34,481,585 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,682,825 - 34,688,404 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ciao1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,106,283 - 83,111,710 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744359,258 - 363,585 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936744359,234 - 364,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIAO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,960,881 - 46,966,635 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1346,960,880 - 46,967,003 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,102,770 - 49,108,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIAO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114685,378 - 690,752 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14685,321 - 690,544 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041168,111,923 - 168,117,714 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ciao1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,344,743 - 2,351,358 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247492,344,833 - 2,350,986 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ciao1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15106,021,919 - 106,027,318 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ciao1
39 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:43
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000017603
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)3125814931139636791Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
RH128407  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23114,460,510 - 114,460,725 (+)MAPPERmRatBN7.2
Rnor_6.03119,671,968 - 119,672,182NCBIRnor6.0
Rnor_5.03126,197,186 - 126,197,400UniSTSRnor5.0
RGSC_v3.43114,740,866 - 114,741,080UniSTSRGSC3.4
Celera3113,301,189 - 113,301,403UniSTS
Cytogenetic Map3q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017603   ⟹   ENSRNOP00000017603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,913,640 - 134,919,166 (-)Ensembl
mRatBN7.2 Ensembl3114,460,321 - 114,465,888 (-)Ensembl
Rnor_6.0 Ensembl3119,671,779 - 119,677,324 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085562   ⟹   ENSRNOP00000069601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,913,640 - 134,940,441 (-)Ensembl
mRatBN7.2 Ensembl3114,460,322 - 114,467,009 (-)Ensembl
Rnor_6.0 Ensembl3119,671,921 - 119,678,092 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103470   ⟹   ENSRNOP00000085618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,913,640 - 134,919,084 (-)Ensembl
mRatBN7.2 Ensembl3114,460,465 - 114,465,917 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109294   ⟹   ENSRNOP00000097207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,917,751 - 134,919,188 (-)Ensembl
mRatBN7.2 Ensembl3114,464,380 - 114,465,888 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113397   ⟹   ENSRNOP00000089224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,913,786 - 134,919,188 (-)Ensembl
mRatBN7.2 Ensembl3114,460,468 - 114,465,872 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117707   ⟹   ENSRNOP00000091185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,913,172 - 134,919,188 (-)Ensembl
mRatBN7.2 Ensembl3114,458,655 - 114,465,888 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000126269   ⟹   ENSRNOP00000103610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,913,640 - 134,979,255 (-)Ensembl
RefSeq Acc Id: NM_001008766   ⟹   NP_001008766
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,913,639 - 134,919,166 (-)NCBI
mRatBN7.23114,460,321 - 114,465,850 (-)NCBI
Rnor_6.03119,671,778 - 119,677,324 (-)NCBI
Rnor_5.03126,196,996 - 126,202,542 (-)NCBI
RGSC_v3.43114,740,676 - 114,746,203 (-)RGD
Celera3113,300,999 - 113,306,382 (-)RGD
Sequence:
RefSeq Acc Id: XM_039104428   ⟹   XP_038960356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,913,639 - 134,919,242 (-)NCBI
mRatBN7.23114,458,671 - 114,465,927 (-)NCBI
RefSeq Acc Id: XR_010064575
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,916,620 - 134,919,244 (-)NCBI
RefSeq Acc Id: NP_001008766   ⟸   NM_001008766
- UniProtKB: Q5M7T1 (UniProtKB/Swiss-Prot),   A6HQ07 (UniProtKB/TrEMBL),   A0A8L2UJ40 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069601   ⟸   ENSRNOT00000085562
Ensembl Acc Id: ENSRNOP00000017603   ⟸   ENSRNOT00000017603
RefSeq Acc Id: XP_038960356   ⟸   XM_039104428
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7Q2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091185   ⟸   ENSRNOT00000117707
Ensembl Acc Id: ENSRNOP00000097207   ⟸   ENSRNOT00000109294
Ensembl Acc Id: ENSRNOP00000085618   ⟸   ENSRNOT00000103470
Ensembl Acc Id: ENSRNOP00000089224   ⟸   ENSRNOT00000113397
Ensembl Acc Id: ENSRNOP00000103610   ⟸   ENSRNOT00000126269

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M7T1-F1-model_v2 AlphaFold Q5M7T1 1-339 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692399
Promoter ID:EPDNEW_R2924
Type:initiation region
Name:Ciao1_1
Description:cytosolic iron-sulfur assembly component 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03119,677,336 - 119,677,396EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307285 AgrOrtholog
BioCyc Gene G2FUF-48000 BioCyc
Ensembl Genes ENSRNOG00000012638 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000017603 ENTREZGENE
  ENSRNOT00000113397 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7129030 IMAGE-MGC_LOAD
InterPro CIAO1/Cia1 UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_CS UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:29231 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95143 IMAGE-MGC_LOAD
NCBI Gene 29231 ENTREZGENE
PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1-RELATED UniProtKB/Swiss-Prot
  PTHR19920 UniProtKB/Swiss-Prot
Pfam WD40 UniProtKB/Swiss-Prot
PhenoGen Ciao1 PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012638 RatGTEx
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A0G2JVS7_RAT UniProtKB/TrEMBL
  A0A8I6A3R5_RAT UniProtKB/TrEMBL
  A0A8I6A7Q2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AE05_RAT UniProtKB/TrEMBL
  A0A8I6AR63_RAT UniProtKB/TrEMBL
  A0A8L2UJ40 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L398_RAT UniProtKB/TrEMBL
  A6HQ07 ENTREZGENE, UniProtKB/TrEMBL
  CIAO1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-01-23 Ciao1  cytosolic iron-sulfur assembly component 1  Ciao1  cytosolic iron-sulfur protein assembly 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Ciao1  cytosolic iron-sulfur protein assembly 1  Ciao1  cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Ciao1  cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)  Wdr39  WD repeat domain 39  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Wdr39  WD repeat domain 39  Ciao1  WD40 protein Ciao1  Symbol and Name updated 1299863 APPROVED
2005-12-06 Ciao1  WD40 protein Ciao1  Ciao1_predicted  WD40 protein Ciao1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ciao1_predicted  WD40 protein Ciao1 (predicted)      Symbol and Name status set to approved 70820 APPROVED