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Gene: Bltp3a (bridge-like lipid transfer protein family member 3A) Rattus norvegicus

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Symbol:

Bltp3a

Name:

bridge-like lipid transfer protein family member 3A

RGD ID:

1307264

Description:

Predicted to enable histone deacetylase binding activity and identical protein binding activity. Predicted to be located in late endosome. Orthologous to human BLTP3A (bridge-like lipid transfer protein family member 3A); INTERACTS WITH bisphenol A; Brodifacoum; paracetamol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC309637; RGD1307264; similar to CG31653-PA; similar to hypothetical protein FLJ20302; UHRF1 binding protein 1; UHRF1-binding protein 1; Uhrf1bp1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	5,912,033 - 5,956,404 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	5,912,106 - 5,956,403 (+)	Ensembl				GRCr8
mRatBN7.2	20	5,910,261 - 5,954,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	5,910,260 - 5,952,404 (+)	Ensembl				mRatBN7.2
Rnor_6.0	20	7,431,235 - 7,475,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	7,431,355 - 7,471,900 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	9,633,259 - 9,677,553 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	6,067,567 - 6,108,468 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	7,471,148 - 7,515,710 (+)	NCBI		Celera
RGSC_v3.1	20	6,067,004 - 6,110,533 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Prostate Cancer (ISO)

systemic lupus erythematosus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

Aflatoxin B2 alpha (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

chlorpyrifos (ISO)

choline (ISO)

clobetasol (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

L-methionine (ISO)

methapyrilene (ISO)

methidathion (ISO)

N-methyl-4-phenylpyridinium (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

Salinomycin (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

late endosome (IEA,ISO)

Molecular Function

histone deacetylase binding (IBA,IEA,ISO)

identical protein binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15361834

Genomics

Comparative Map Data

Bltp3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	5,912,033 - 5,956,404 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	5,912,106 - 5,956,403 (+)	Ensembl				GRCr8
mRatBN7.2	20	5,910,261 - 5,954,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	5,910,260 - 5,952,404 (+)	Ensembl				mRatBN7.2
Rnor_6.0	20	7,431,235 - 7,475,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	7,431,355 - 7,471,900 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	9,633,259 - 9,677,553 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	6,067,567 - 6,108,468 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	7,471,148 - 7,515,710 (+)	NCBI		Celera
RGSC_v3.1	20	6,067,004 - 6,110,533 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

BLTP3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	34,792,083 - 34,877,514 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	34,792,083 - 34,877,514 (+)	Ensembl			hg38	GRCh38
GRCh37	6	34,759,860 - 34,845,291 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	34,867,772 - 34,953,269 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	34,867,772 - 34,961,095	NCBI
Celera	6	36,314,255 - 36,399,721 (+)	NCBI		Celera
Cytogenetic Map	6	p21.31	NCBI
HuRef	6	34,482,565 - 34,568,027 (+)	NCBI		HuRef
CHM1_1	6	34,761,891 - 34,847,345 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	34,614,874 - 34,700,320 (+)	NCBI		T2T-CHM13v2.0

Bltp3a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	28,075,481 - 28,119,014 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	28,075,415 - 28,119,015 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	27,856,507 - 27,900,040 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	27,856,441 - 27,900,041 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	27,993,452 - 28,036,985 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	27,583,387 - 27,627,630 (+)	NCBI		MGSCv36	mm8
Celera	17	28,409,281 - 28,453,282 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	14.59	NCBI

Bltp3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	2,875,835 - 2,904,114 (+)	Ensembl
ChiLan1.0	NW_004955437	2,844,544 - 2,905,073 (+)	NCBI	ChiLan1.0	ChiLan1.0

BLTP3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	49,261,172 - 49,344,867 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	45,129,903 - 45,212,251 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	34,356,919 - 34,439,105 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	35,453,735 - 35,536,405 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	35,453,735 - 35,538,846 (+)	Ensembl			panPan2	panpan1.1

BLTP3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	4,027,333 - 4,087,988 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	4,027,455 - 4,089,578 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	4,039,412 - 4,103,264 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	4,360,073 - 4,423,970 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	4,359,752 - 4,425,564 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	4,020,178 - 4,084,147 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	4,101,125 - 4,165,202 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	4,201,231 - 4,265,219 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Bltp3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	39,601,705 - 39,674,406 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	24,290,182 - 24,358,337 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	24,273,233 - 24,358,518 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BLTP3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	30,731,461 - 30,802,735 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	30,731,466 - 30,799,958 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	35,474,824 - 35,540,338 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BLTP3A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	37,241,841 - 37,322,220 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	37,246,908 - 37,321,337 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	34,710,150 - 34,792,452 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bltp3a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	22,476,430 - 22,536,630 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	22,474,951 - 22,536,828 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Bltp3a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	5,958,833 - 6,001,981 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Bltp3a
345 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	74
Count of miRNA genes:	72
Interacting mature miRNAs:	74
Transcripts:	ENSRNOT00000049592
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
61474	Eae1	Experimental allergic encephalomyelitis QTL 1	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	20	1	6693431	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3626323	10078622	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	6693431	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3626323	9244918	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

BE108400

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	5,905,452 - 5,905,628 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	7,426,396 - 7,426,571	NCBI	Rnor6.0
Rnor_5.0	20	9,628,421 - 9,628,596	UniSTS	Rnor5.0
RGSC_v3.4	20	6,062,657 - 6,062,832	UniSTS	RGSC3.4
Celera	20	7,466,308 - 7,466,483	UniSTS
RH 3.4 Map	20	58.9	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	88	59	6	352	188	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002725844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002728921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000049592 ⟹ ENSRNOP00000046054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	5,912,147 - 5,951,235 (+)	Ensembl
mRatBN7.2 Ensembl	20	5,910,260 - 5,949,472 (+)	Ensembl
Rnor_6.0 Ensembl	20	7,431,355 - 7,471,900 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102198 ⟹ ENSRNOP00000081841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	5,912,106 - 5,956,403 (+)	Ensembl
mRatBN7.2 Ensembl	20	5,910,329 - 5,952,404 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103992 ⟹ ENSRNOP00000076558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	5,912,147 - 5,956,403 (+)	Ensembl
mRatBN7.2 Ensembl	20	5,910,260 - 5,952,404 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104971 ⟹ ENSRNOP00000087799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	5,931,686 - 5,956,403 (+)	Ensembl
mRatBN7.2 Ensembl	20	5,929,917 - 5,952,404 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123054 ⟹ ENSRNOP00000104586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	5,923,556 - 5,956,403 (+)	Ensembl

RefSeq Acc Id:

XM_002728921 ⟹ XP_002728967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	5,912,033 - 5,956,404 (+)	NCBI
mRatBN7.2	20	5,910,261 - 5,954,641 (+)	NCBI
Rnor_6.0	20	7,431,235 - 7,475,515 (+)	NCBI
Rnor_5.0	20	9,633,259 - 9,677,553 (+)	NCBI
RGSC_v3.4	20	6,067,567 - 6,108,468 (+)	RGD

Sequence:

show sequence

TGCCGCGGCGCGCGTCCCCGCCCCTCGCCGTGCGCTCTCGCCACGGGGAGCCGAGAGGGCGGCG
TGCGGTCGCGGTTCTTCGCGGGAGGCTGCGGGCTGCGCGGGTGGGTGGGAACGTGGTGGAACTC
CGGGCGCTGCGGCAGGGGCGACAGAGCGCCATGGCGGCTGCTGTGGCTACGGCGGTCGGTGCCC
GCACCGCGGCGAGGTGAGAGGACGCCTCTTTACCACAACTGAGGAGGCCAGGACAACCCGCCTG
CCTGCACTCCACGCGGGCCGCGGCTACAGCATGGCCGGGATCATTAAGAAGCAGATCTTGAAGC
ATCTGTCCCGGTTCACGAAGAATCTTTCCCCAGACAAAATCAACTTGAGCACGCTGAAAGGGGA
GGGTCAGCTGACCCATCTGGAGCTGGATGAAGAGGTTCTGCAGAATGTGCTGGAACTGCCTACC
TGGCTGGCCATCACCAGGGTCTACTGCAACAGGGCCTCCATCCGGATCCAGTGGACCAAGCTGA
AGACACATCCGATCTGCTTGTGTCTGGATAAGGGGGAGGGGGAAATGAAAACCTGTGAGGACCC
TCGACCCCCCAATGGACAGTCTCCCATCGCCCTTGCTTCAGGACAGAGTGAGTACGGCTTTGCT
GAGAAGGTGGTGGAGGGGATGTTCATCGTGGTCAACTCCATCACCATCAAGATCCACTCCAAGG
CCTTCCACGCTTCCTTTGAACTGTGGCAGCTCCAGGGTTATAGTGTCAACCCCAGCTGGCAGCA
GAGTGACCTGCGTCTGACCCGCATCACTGATCCCCGCCGAGGAGAGGTTTTAACATTTAAGGAA
ATAACTTGGCAGACGCTCCGAGTCGAGGCAGACGCCACAGAAAACGGTGATCAGGACCCAGTTA
CCACCCCGCTGAGGCTCATTACCAACCAAGGCCGGATCCAGATAGCCCTCAAGAGAAGAACGAA
GGACTGCAACGTGGTTGCCTCCAAGTTGACATTCCTCCTGGACGACCTGCTCTGGGTGCTGACA
GACTCACAGCTCAAGGCGATGATGAAGTATGCTGAGTCGCTAAGCGAGGCCATGGAGAAGTCGG
CCCAGCAGAGAAAGAGCCTGGCACCCGAGCCTGTGCAGATCACTCCACCTGCTCCCAGCGCCCA
GCAGACCTGGGCCCAGGCGTTCGGGGGCAGCCAGGGGAACAGCAGCAGCAGTCGCCTCAGCCAG
TATTTTGAGAAATTTGATGTGAAGGAGTCCTCGTACCACCTCCTCATCTCCCGCCTGGACCTGC
ACATCTGTGACGACAGCCAGTCCCGAGAGCCAGGTGTGTCAGCAAACAGACTCACAGGAGGTGC
AATGCAGCTCACCTTCCGCAAGATGGCGTTCGACTACTACCCCTTCCACCGGGCAGGTGACAGC
TGTAAACACTGGGTGCGGCACTGTGAGGCCATGGAGACCCGAAGCCACTGGGCCCAGCAACTGG
TGACAGAGTTTCAGAGTAGGATGGAGAAGTGGTGTGAGGAGAGCAGTGTGAAGCCACCTTGGCA
TCTGGGGGTAGACCCTCCCTTTCGGAAGAAAGCAGATTCTTTCTCTAGTCCTGGAAAGAGCCCT
CTCGACAAAAGCCCTACTCAGGGCCGGCAAGCTGCCTTTGGGTCTCCAGCATGGAGTCGCTTAC
GCTCTAGCTGCCTGGTTGTACGAGTAGATGACCTGGATATCCACCAGGTTTCCACAGCCGGACA
GCCAAGTAAGAAGCCGTCCACCCTGCTCTCCTGCAGTCGCAAACGCCACCGCCTCCCGAGCCAG
GTGGCTGCCATCCATGTACAGTTCACAGAGTATTACTTCCCGGATAATCAGGAGCTTCCAGTTC
CGTGCCCCAATCTCTACATCCAGTTAAACGGGCTGACGCTTACCGTGGATCCCGTCAGCTTGCT
CTGGGGAAACCTCTTCTGCCTGGACTTGTACCGAAGCTTGGAGCAGTTCAAGGCCATCTACAAG
CTGGAAGACCCCAGGGGCAAGGATGAGCACTTGGACATCCGACTGGATGCGTTCTGGTTGAAGG
TGAGCTTCCCACTGGAGACTAGGGACCTGGCGAAGCTGCACCGTCCCCAGGCGCTTGTCCTCTC
CACGTCGGGCGTGATTGCCACCAACACCCGGCACGCCCCACACTGCAGTTGTCCAGACCTCCAG
GGCCTCTTCCGGGGCTTTGCTGCCACCGAGTTCTTCCGCTCCAGCTACGGTCACTTTCCCAAGG
TTCCAGGGGGCTTCAGCCTCCTGCACATGGTCTTCCTGCACCACGCCTTCCAGACGGACTCGCT
TCCCGCCCAGCCTAGTTCCCTGCCTCCTCAGAGGCCAGCGGCGGCCCAGGACCTTTGGTCCCTG
CATTTCACCCAGATTTCCTTGGACTTCGAAGGCACAGAGAATGTCAAAGGCCATGCCTTGAATT
TTGTGGCTCCCTTCCCCCTGTCCATCTGGGCCTGCCTTCCTCTCCGCTGGCAGCAAGCCCAGGC
TCGGCGGCTCCTTTTGGCCTCCGAGGGGAGGCTGAAACCGTCAGCTAGCTTCGGCAGCCCTGTG
CACTCTGAGGCTCTTGCCCCCGAGTCCGTGTCCCATCAGAGGTCAAAGACTGAACGAGATTTGA
AAAGCCTCTCCGGCTCGGGGGAAGTCCTGGGGGCTGTGAGAGAAGGTGATGCTGGTGTGGACCA
CAGAGGGCAGGTGGCTGAGCTGGAGGATGTGGCAGACATTCACATGCTTGTACACTCCACTGCC
CATGTCAGAGTGAGGCTGGACCACTACCAGTACTTGGCCCTGCTGCGCCTCATGGAGGTGCTTC
AGGGCCTTCAGGAGCAGCTGACCAAGGACACAGAGGCCATGACTGGGTCTCCCCTGCAGGACCA
GACAGTGTGTGTTGGAGTTCTCTTCCCCAGTGCTGAGGTGGCTCTTCTCATGCCCCCGGACCCC
GGGGCCGCTCACGCAGACTCTGCGGGCTCAGACACCACCAGCCTCATAGACTCAGAGCTGTCGC
CATCAGAGGACCGAGAGCCAAAGTCGGATGCCTCCTCAGACCAGGGCCCAGTGAGCCCTGAGAA
GGTCCTGAGGGACAGCAGCGCTGAAAATCTGGATGCGTCCCAGGAGAGGCTACATGGTGATGGG
GAGCTACAGGACGTCGGTCCACTCGCACAGCAGCCAGCAGGGAAGAGCCATGAGGCGGTCGAGT
CTTTACAGGCCAAGAAGTTGAGCAGAGCTCAAACCGCCACCAGCCCACCGACTGCGGACAGGGA
TGCTGCTCTGAATGGACAAGGCGAGCCCATTCCCTTGAGGAGCATTGAGGGGGAATTGTCCAGT
GCCATTCACATGACCAAGGATGCCACCAAAGAGGCTCTCCACGCTACCGTGGACCTTACCAAGG
AGGCTGTGTCCCTGACTAGGGATGCCTTCAGTTTGGGTAGAGATCGAATGACTTCCACCATGCA
CAAGATGTTGTCCTTGCCTCCTGCCAAGGAGGCCATGGCCAAGTCAGACGAGGGAGTGGCGGCC
CCAGCGAGTGGAGGTCCTGCCCGGCTCCGGTTTTTCTCCATGAAGAGGACAGTCTCTCAGCAGT
CATTCGATGGTGTCTCGTTGGACAGCGGGGGCCCCGAAGACCGGATTTCGGTGGACAGCGATGG
CAGTGACAGCTTTGTGATGCTCTTGGAGTCTGAGTCTGGTCCAGAGTCTGTTCCACCAGGATCT
GTGACAAGCGTCTTGGATGATAGTGGCATTCAAGGGAGCCCTGTCATGGATAGCAGTGGCCAGG
GGTTGCCCGAGACCAACAGCTCAGCGTCAGCCAGTGGAGACCTCGCCCTGCACTCGGTGTCAGT
TCTGGTCCTAAAGGTGAGCGAAGTGTCACTTGGGCTTGAGGTTCGCGGTGAGGACCTGGCCGTA
GCCTTGCAAGCACAGCAGCTGGCCCTGCAGCAGCTCGGCACCGTGGGACTCTGGCAGTTTCTAC
ATGGACAGTGCCCAGGCCCAAGCTTTGAGGGACCCTCGGACCTGAAGACTGACTCCACCAGGCC
TGCTGTGGGTCTGCGTTTTGAGGTGGGGCCTGGTGCAGCTGTTCATTCCCCGCTGGCCGCGCAG
AATGGCTTCCTGCGGTTCTCACTTCGGGGCTGTGACCTGGAGCTGTTCACCTCAGTGCTCAACG
GTCTGGGGCCTTTCTTGGAGGATGAGTGCGTCCCGGTGGTAGTCCCCATGCAGATGGAGCTCCT
GGACTGCAGTGTTACTCTCAAGGATGATATCCCTCCAATCTATCCAACATCCCCTGGCCCTGTG
CCCATCACTTTGACAATGGAGCGTCTCATGCTGAAGCGGGGTGACGATGGTGTGTTTCACCTTG
GTGCTCCTGCTCAGGACAGGCCGTTGGCTGAAGGACCTGAGAAGCAGCAGCTCCCGAAAGAGCA
GGTGCCCCTGGTGCCCACAGGACAGGGCTTGGGACACCAGGCTCAAGGAGATGCTACTGTGTTC
TCTAGTGGTGAACTGTTTCTCCTTCAGGAGAAAGGCTCGCCTACTCTGCAGCAAGAACTTGCAG
ACACCAAACAAGCACTGGCCATTGCCAACCAGGACAGAGAAAAGCTGCTCCAGGAGATTAGGAA
ATACAACCCACTCTTTGAGCTTTGACAGCGGCTCAGCCGTCCAGGCTCCACAGAGAAGCTATCA
CCAGCAACAGTGCCGCCTGGGACAGGCGCTGGCCCGGGAGCCAGCAGGGCCAGGAGCACACGTT
CATTCCTTGTGTGCTTCCTGCTGGCTGCCAGCCTGGGCGGAGGAGGAGCCGGCAGAGCATGGCC
GCACCCAGGAATGGGGTGGCTCTGTCCCTGGCCCTGCACTGCGTCTTGCCATTAATGTAGCCTT
GTAGTCCTCTGCACACTAGAGGAGTCTTCTCTACATCGTAGAGCGTTTCACCTCCTGGTGTCAC
GGCAGTGTCTGCTTCCTTCATGGCCTATGTGAACAGGTGTCCACCGAGTCATGCACACAGCCAC
CAAAGATCCCGTGTCCTGGAGCTTCCTGTGGCGTACCTGAGAGGTCCTTGGCCTGAGTCTTGAA
GTAGATCGATCAATAGCCGATCCTCAGGGGTTGAGGCAGAGGAGGTCTGCGATCAGGGCAACAT
GGACTCGCCTCAGTGGAACGGGAGCTAGGCTCGTGTCATCTTGGCTGATGTTCTGGGTCAAGCT
TTCATGTAGGATTTCTTCGTTGTGATGCTTTGACTCTGAAGTGGCTAGATCCTCTTTCCCTGCA
TAAGAATTGGTTTGAGGTTTAAGTCAGGACAGGGCTCACCTGCTCCCGAGTGCTCAGCTGAGAG
CATGACAGGGTGGGGATACAGTTGCTGTTTTCACAGCTGTCCATGACAGGTCCCTTCCTTTCTG
TTCCTGGAGTCACCTGCTTTCCCAGGACTGCCTCATCTTTCTGCCTGTGCTTCTGGTAGGCTTC
CGACTGAGCTAAACTTAGTTCTACCCACCTCGGTATGCTGCCTCACTCCCCTCTATTTGGTTTT
TTAAAATCATGTTTCCCAGGTTTCCTTCTGGTCCTATCAAAGTTTCCCCTTTCCTTCCGATTGT
CAGAGCTTGGCTCTGTGGTGTGCTGTCTGGGTAGAAGCACAGCCTGGCTGACTCGCTTACTTGG
CAGATGGTCTGTCCGTCTGTCGTGAGCTGGTGATGCTCTGGAGTCCTGACTGTGGCTGAGGGAG
GGAAGGAGGAGAACCATTCCACGTAAAAAGGAGCACAGCTATGGAAGGATAAGGTCACACTGTT
CAGACTTGCAGGGCCAGACATGTTCTTCACCAAGGCAAATTTCAGAACACCACGTCTTACAGAA
CTGGTTTGTTAAACTGAGGAGACACAGATTTGGGGACAACATCTTCTGGAGACAGTGTTAACAG
GTGAAGTTCCCTCATTTCAAATTTTTTATAAATGACCTAGAACTTTAAATGGTGAACTGTTTAT
CCTTCAGAATGCCATTCTGTTTACATTCGATGTCACACAACTTGTAGACAGTGAAAAGCAGACC
AGAAGACAGAAATAACCATAAAGCCACAGGGGAGTGAGCAAGGCTGTGAACAGGCAGCCTGACA
GGAGAGGTTCAGCACAGTGGAGGGCTGGAGTGGAGCCCAGTAGTAGAGTATGTGAGCGGCACGT
GAGGGCCTGGGCTCAGCCCACGATCACAAACTCTGTCACAGAAATAAAGACTGTATGTCTAAAC
AACCGCCACTACTACTAGAACCAAATACTCAGGAAAGAAGCCAGAGCCTTGCTGAGGGAGCAGG
GATCAGTGAGATGCTGTGGTCTAAAGCCCGGCGGTGCCCCAGCACAGGGGAGTGCCCTCATCCC
CCTACTGGGCACTTCGATTGTACTTGTTTATCTGGGAGTTGGAGAGTGATCAAGGTGAAGACAT
TGTCCTGAGGGGGGCAAGGGACCACACACAGGATCGGGGACCCAATCTTGAAACTTTAGTTCTG
GGGCCCTGTCACTGCCTCAGGGAAAAAGAAAGCACTTTTAGCAAAGTCAGGAACTTGAAGGGCT
TGTTGGAGAAGCGGCCCCTGTGTTTCTGACATTCTTGGAGGGAAGGGAGAGCAGTAACTAGGAA
ACAGGATCTTCAGGGTCACTTGACCTGGCTTACATCAAATCCCTTCCTCTTCCGCTCACTGCAT
CCCCTCCCTCAGGAAAAGATTTCTGACAAATACTTGGTGCACTTTACCCTTGAGCTTGCAGTAG
AGACCTATTTTGTGTCAAGGACAATGCCTTAATGGCCAGAACGTCAGGTTTTTGAGCTAAGGGA
GTCTGGGCTTCTTGTCCATGTGCAAACAGAGATGTAGAGTTCTGGCCCCCTTTATGCTTTGGCC
TTTGTGTCTTGAAATCAGCCCTCGGGAAGGAAGCGTGGGAAGATTACATCCCATGGCATTTCAA
TAGTGTCTTGCGATTCCATTGCCCTGTTCACTGGGGGATGAGCAGGAGAGACTTGGCCATAATG
CACCTGGCTGTGTGGATCTCCAGGGTAAGGGTACGGGAAACCGTCAGGCAGTGCTTTTGAAGTT
CAGCTGTGAAGTTGCAGTTTGCAATACGAAATACCTCGAGACTTCTGCAGGGACCGCAACACTG
TCCCTCAGAGTGTTCAGTCACTGCACATGGCCCTCAGCTGTAAAACTCTTTATAGCTGCATCAT
CTGTGATTGTCGAACTTTCCTGTTTACATGCCTGTGCCGGCAGTGTTCCCTGGTGTGTGTAGAC
TTAGAGTTGAGCCCGCTAACTGGGCTGCAGAGATGTGGCTCAAACTCATTTTCAGTTTACTGGA
ATGATGAACGGAGTCTCTGATGGTGCCAACATGGCTTCTCTCTCTCCCCATGAGCTGTTTTCAG
TTTCACTCTCTGACCTTACCGAGCTATGGGCTGCACTCTTTGTGCTCTGTGCTGAGAGAAACGG
GACATGTGAAGTAGAAAGTGTCGCTACCACAACTCAGCAAAGCCCGGAACCAAGTATCTGCTGT
CTTTATGTTGTGTTGGGTTTTCCTTAGGGGCTCCAGAGGTTGAGCCCTGCAGAGGTGGTGTGAG
GTTTCCTGGGTGGGAGCTTTGTATTCCTGACCCCTTTCTTTCATCTTGATGCATAAACTACCCA
AGCTAGCAGATTAACATCTGCTTAAGACCACAACAGCCAGGACTCGTAGTTATGAACTCTTGGA
GATGGGCAATGCACGTTTGTCTGGGTGATCAGAGCCTTGCAGGTGCCACCACTCTCTCCAGTCC
AGTTCTCCAGGGTAGGTATGGAGAGTGGCTGTTAGTGAAGAAAGAGGCCTTCTGCCCCCAAGGC
ACAGGGAAAAACTTGGTAACTTTTAACAGTTAAGCCTTGCTAAAGTGGCCAGGCCTGAGATCTG
AGCTTCCTGTTCTGCTGCTGTGTTTCTTATCCTGTATCCTTTATCAAAGTGGACATACTCCTGT
GTGTTAAGAATTTCCTATTGGAGTTGTGAGGGAAATTTTTTGTCAGTTTACTACTTTCTGGTGA
AGAGTTAGCTTGAGTCTTACATGCTTTCTGTGGAGTGCCCCCACGGAAGTGTCCTCTGCACTGG
CTGAGCCAGTGAGTTTCAATGTAAGTTCCTAAGTTAGATCAGTCCAATTACGTGAGTCTGAACT
GTTTCCCTAACTCAGGGTGCTAAAATAAGACTTGCTCAGGAAAGCTTCAGAAGAAAACAGCTTC
CAAGCCTGCTTCCCGTGACACTCAGCAGCACATGGGGAGCGGGCCAGCAGATTGCCAACTACAT
CAGGTAGCCTTACTACTGCTAATCACTGTCAATGCCCTTCATTCTCCGAGGAGAGCAGTGAGAA
TGGATACAGTGAACTGAACCTTGGTCAGTATTGGGAAATTTACTGTTGAAATAGCTAATCGAGT
CCCAAGTGTACTGGTTCTGTGAACCACCTGAAAAGCAAAATAAATGATACCATTGAATGGCA

hide sequence

RefSeq Acc Id:

XM_039099274 ⟹ XP_038955202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	5,926,746 - 5,956,404 (+)	NCBI
mRatBN7.2	20	5,925,365 - 5,954,641 (+)	NCBI

RefSeq Acc Id:

XM_039099275 ⟹ XP_038955203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	5,912,396 - 5,956,404 (+)	NCBI
mRatBN7.2	20	5,910,624 - 5,954,641 (+)	NCBI

RefSeq Acc Id:

XM_039099276 ⟹ XP_038955204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	5,938,411 - 5,956,404 (+)	NCBI
mRatBN7.2	20	5,936,635 - 5,954,641 (+)	NCBI

RefSeq Acc Id:

XR_005497711

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	5,912,070 - 5,951,934 (+)	NCBI
mRatBN7.2	20	5,910,299 - 5,950,171 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418709	(Get FASTA)	NCBI Sequence Viewer
	XP_002728967	(Get FASTA)	NCBI Sequence Viewer
	XP_038955202	(Get FASTA)	NCBI Sequence Viewer
	XP_038955203	(Get FASTA)	NCBI Sequence Viewer
	XP_038955204	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046054.6
	ENSRNOP00000076558.1
	ENSRNOP00000081841
	ENSRNOP00000081841.2
	ENSRNOP00000087799.1
	ENSRNOP00000104586.1

RefSeq Acc Id:

XP_002728967 ⟸ XM_002728921

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTHLELDEEVLQNVLELPTWLAITRVYCN
RASIRIQWTKLKTHPICLCLDKGEGEMKTCEDPRPPNGQSPIALASGQSEYGFAEKVVEGMFIV
VNSITIKIHSKAFHASFELWQLQGYSVNPSWQQSDLRLTRITDPRRGEVLTFKEITWQTLRVEA
DATENGDQDPVTTPLRLITNQGRIQIALKRRTKDCNVVASKLTFLLDDLLWVLTDSQLKAMMKY
AESLSEAMEKSAQQRKSLAPEPVQITPPAPSAQQTWAQAFGGSQGNSSSSRLSQYFEKFDVKES
SYHLLISRLDLHICDDSQSREPGVSANRLTGGAMQLTFRKMAFDYYPFHRAGDSCKHWVRHCEA
METRSHWAQQLVTEFQSRMEKWCEESSVKPPWHLGVDPPFRKKADSFSSPGKSPLDKSPTQGRQ
AAFGSPAWSRLRSSCLVVRVDDLDIHQVSTAGQPSKKPSTLLSCSRKRHRLPSQVAAIHVQFTE
YYFPDNQELPVPCPNLYIQLNGLTLTVDPVSLLWGNLFCLDLYRSLEQFKAIYKLEDPRGKDEH
LDIRLDAFWLKVSFPLETRDLAKLHRPQALVLSTSGVIATNTRHAPHCSCPDLQGLFRGFAATE
FFRSSYGHFPKVPGGFSLLHMVFLHHAFQTDSLPAQPSSLPPQRPAAAQDLWSLHFTQISLDFE
GTENVKGHALNFVAPFPLSIWACLPLRWQQAQARRLLLASEGRLKPSASFGSPVHSEALAPESV
SHQRSKTERDLKSLSGSGEVLGAVREGDAGVDHRGQVAELEDVADIHMLVHSTAHVRVRLDHYQ
YLALLRLMEVLQGLQEQLTKDTEAMTGSPLQDQTVCVGVLFPSAEVALLMPPDPGAAHADSAGS
DTTSLIDSELSPSEDREPKSDASSDQGPVSPEKVLRDSSAENLDASQERLHGDGELQDVGPLAQ
QPAGKSHEAVESLQAKKLSRAQTATSPPTADRDAALNGQGEPIPLRSIEGELSSAIHMTKDATK
EALHATVDLTKEAVSLTRDAFSLGRDRMTSTMHKMLSLPPAKEAMAKSDEGVAAPASGGPARLR
FFSMKRTVSQQSFDGVSLDSGGPEDRISVDSDGSDSFVMLLESESGPESVPPGSVTSVLDDSGI
QGSPVMDSSGQGLPETNSSASASGDLALHSVSVLVLKVSEVSLGLEVRGEDLAVALQAQQLALQ
QLGTVGLWQFLHGQCPGPSFEGPSDLKTDSTRPAVGLRFEVGPGAAVHSPLAAQNGFLRFSLRG
CDLELFTSVLNGLGPFLEDECVPVVVPMQMELLDCSVTLKDDIPPIYPTSPGPVPITLTMERLM
LKRGDDGVFHLGAPAQDRPLAEGPEKQQLPKEQVPLVPTGQGLGHQAQGDATVFSSGELFLLQE
KGSPTLQQELADTKQALAIANQDREKLLQEIRKYNPLFEL

hide sequence

Ensembl Acc Id:

ENSRNOP00000046054 ⟸ ENSRNOT00000049592

RefSeq Acc Id:	XP_038955203 ⟸ XM_039099275
- Peptide Label:	isoform X1
- UniProtKB:	A6JJN8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955202 ⟸ XM_039099274
- Peptide Label:	isoform X1
- UniProtKB:	A6JJN8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955204 ⟸ XM_039099276
- Peptide Label:	isoform X3
- UniProtKB:	A6JJN8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000076558 ⟸ ENSRNOT00000103992

Ensembl Acc Id:

ENSRNOP00000087799 ⟸ ENSRNOT00000104971

Ensembl Acc Id:

ENSRNOP00000081841 ⟸ ENSRNOT00000102198

Ensembl Acc Id:

ENSRNOP00000104586 ⟸ ENSRNOT00000123054

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMR2-F1-model_v2	AlphaFold	D3ZMR2	1-1448	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701456

Promoter ID:

EPDNEW_R11977

Type:

initiation region

Name:

Uhrf1bp1_1

Description:

UHRF1 binding protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	7,431,261 - 7,431,321	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307264	AgrOrtholog
BioCyc Gene	G2FUF-4455	BioCyc
Ensembl Genes	ENSRNOG00000000495	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000049592.7	UniProtKB/TrEMBL
	ENSRNOT00000102198	ENTREZGENE
	ENSRNOT00000102198.2	UniProtKB/TrEMBL
	ENSRNOT00000103992.2	UniProtKB/TrEMBL
	ENSRNOT00000104971.2	UniProtKB/TrEMBL
	ENSRNOT00000123054.1	UniProtKB/TrEMBL
InterPro	UHRF1BP1_like	UniProtKB/TrEMBL
NCBI Gene	309637	ENTREZGENE
PANTHER	PTHR22774	UniProtKB/TrEMBL
	UHRF1-BINDING PROTEIN 1	UniProtKB/TrEMBL
Pfam	BLTP3A_B	UniProtKB/TrEMBL
PhenoGen	Bltp3a	PhenoGen
RatGTEx	ENSRNOG00000000495	RatGTEx
UniProt	A0A8I5Y6T9_RAT	UniProtKB/TrEMBL
	A0A8I5ZTR4_RAT	UniProtKB/TrEMBL
	A0A8I6A3T8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LV67_RAT	UniProtKB/TrEMBL
	A6JJN8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMR2_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-17	Bltp3a	bridge-like lipid transfer protein family member 3A	Uhrf1bp1	UHRF1 binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Uhrf1bp1	UHRF1 binding protein 1	RGD1307264	similar to hypothetical protein FLJ20302; similar to CG31653-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1307264	similar to hypothetical protein FLJ20302; similar to CG31653-PA	RGD1307264_predicted	similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307264_predicted	similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted)	LOC309637_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC309637_predicted	similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD