Sbno2 (strawberry notch homolog 2) - Rat Genome Database

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Gene: Sbno2 (strawberry notch homolog 2) Rattus norvegicus
Analyze
Symbol: Sbno2
Name: strawberry notch homolog 2
RGD ID: 1307194
Description: Predicted to enable chromatin DNA binding activity and histone binding activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; macrophage activation involved in immune response; and regulation of DNA-templated transcription. Predicted to act upstream of or within bone mineralization; bone trabecula morphogenesis; and osteoclast fusion. Predicted to be active in nucleus. Orthologous to human SBNO2 (strawberry notch homolog 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314619; RGD1307194; similar to KIAA0963 protein; Stno; strawberry notch homolog (Drosophila); strawberry notch homolog 2 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,256,221 - 10,300,175 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,253,248 - 10,300,176 (+)EnsemblGRCr8
mRatBN7.279,605,572 - 9,649,529 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,605,627 - 9,649,527 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,488,594 - 12,532,391 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,363,932 - 14,407,729 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,225,039 - 12,268,858 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,471,805 - 12,515,700 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,471,824 - 12,518,654 (+)Ensemblrn6Rnor6.0
Rnor_5.0712,641,918 - 12,685,803 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,117,835 - 11,161,863 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,781,528 - 7,825,383 (+)NCBICelera
RGSC_v3.1711,117,834 - 11,161,848 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (ISO)
2,2'-Methylenebis(4-methyl-6-tert-butylphenol)  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aripiprazole  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
choline  (ISO)
clobetasol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diquat  (ISO)
doxorubicin  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
methotrexate  (ISO)
methylparaben  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
propylparaben  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18025162   PMID:23980096   PMID:25903009  


Genomics

Comparative Map Data
Sbno2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,256,221 - 10,300,175 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,253,248 - 10,300,176 (+)EnsemblGRCr8
mRatBN7.279,605,572 - 9,649,529 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,605,627 - 9,649,527 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,488,594 - 12,532,391 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,363,932 - 14,407,729 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,225,039 - 12,268,858 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,471,805 - 12,515,700 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,471,824 - 12,518,654 (+)Ensemblrn6Rnor6.0
Rnor_5.0712,641,918 - 12,685,803 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,117,835 - 11,161,863 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,781,528 - 7,825,383 (+)NCBICelera
RGSC_v3.1711,117,834 - 11,161,848 (+)NCBI
Cytogenetic Map7q11NCBI
SBNO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,107,638 - 1,174,268 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,107,636 - 1,174,295 (-)Ensemblhg38GRCh38
GRCh37191,107,637 - 1,174,267 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,058,633 - 1,125,282 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34191,058,657 - 1,125,259NCBI
Celera191,040,607 - 1,110,334 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19881,117 - 952,119 (-)NCBIHuRef
CHM1_1191,107,226 - 1,174,370 (-)NCBICHM1_1
T2T-CHM13v2.0191,072,304 - 1,145,101 (-)NCBIT2T-CHM13v2.0
Sbno2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,892,826 - 79,941,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,892,826 - 79,941,405 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381080,056,992 - 80,106,108 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,056,992 - 80,105,571 (-)Ensemblmm10GRCm38
MGSCv371079,519,759 - 79,565,447 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361079,460,143 - 79,505,831 (-)NCBIMGSCv36mm8
Celera1081,071,823 - 81,117,539 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Sbno2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,729,205 - 6,772,180 (+)Ensembl
ChiLan1.0NW_0049554956,709,190 - 6,770,816 (+)NCBIChiLan1.0ChiLan1.0
SBNO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,444,248 - 5,517,972 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,680,822 - 4,754,735 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,032 - 20,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1191,086,385 - 1,161,261 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,086,968 - 1,136,272 (-)EnsemblpanPan2panpan1.1
SBNO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,592,901 - 57,640,047 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,267,724 - 57,640,750 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2057,395,483 - 57,442,346 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02058,337,100 - 58,381,683 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,335,473 - 58,381,838 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,392,724 - 57,437,602 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,870,302 - 57,917,096 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,073,231 - 58,120,125 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sbno2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,279,177 - 217,325,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588505,948 - 541,831 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936588509,244 - 556,424 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SBNO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,275,013 - 77,320,367 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1277,278,059 - 77,320,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,677,279 - 77,693,056 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SBNO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16877,066 - 950,663 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6877,049 - 931,433 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660817,915,879 - 7,990,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sbno2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,478,970 - 7,537,428 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248287,479,695 - 7,532,961 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Sbno2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11154,771,737 - 154,818,411 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sbno2
1218 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:150
Interacting mature miRNAs:168
Transcripts:ENSRNOT00000068197
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
D7Rat156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,616,649 - 9,616,889 (+)MAPPERmRatBN7.2
Rnor_6.0712,482,847 - 12,483,086NCBIRnor6.0
Rnor_5.0712,652,950 - 12,653,189UniSTSRnor5.0
RGSC_v3.4711,128,857 - 11,129,097RGDRGSC3.4
RGSC_v3.4711,128,858 - 11,129,097UniSTSRGSC3.4
Celera77,792,553 - 7,792,792UniSTS
RGSC_v3.1711,128,822 - 11,129,117RGD
FHH x ACI MapX16.76UniSTS
FHH x ACI MapX16.76RGD
Cytogenetic Map7q11UniSTS
BE100284  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,629,083 - 9,629,233 (+)MAPPERmRatBN7.2
Rnor_6.0712,495,279 - 12,495,428NCBIRnor6.0
Rnor_5.0712,665,382 - 12,665,531UniSTSRnor5.0
RGSC_v3.4711,141,290 - 11,141,439UniSTSRGSC3.4
Celera77,804,985 - 7,805,134UniSTS
RH 3.4 Map741.5UniSTS
Cytogenetic Map7q11UniSTS
MARC_21175-21176:1027090938:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,640,590 - 9,641,405 (+)MAPPERmRatBN7.2
Rnor_6.0712,506,786 - 12,507,600NCBIRnor6.0
Rnor_5.0712,676,889 - 12,677,703UniSTSRnor5.0
RGSC_v3.4711,152,905 - 11,153,719UniSTSRGSC3.4
Celera77,816,447 - 7,817,261UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000068197   ⟹   ENSRNOP00000062533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,275,419 - 10,300,174 (+)Ensembl
mRatBN7.2 Ensembl79,605,627 - 9,649,527 (+)Ensembl
Rnor_6.0 Ensembl712,471,824 - 12,515,699 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077146   ⟹   ENSRNOP00000071247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,253,248 - 10,300,173 (+)Ensembl
mRatBN7.2 Ensembl79,605,627 - 9,649,527 (+)Ensembl
Rnor_6.0 Ensembl712,487,361 - 12,518,654 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099606   ⟹   ENSRNOP00000084971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,282,904 - 10,300,176 (+)Ensembl
mRatBN7.2 Ensembl79,632,000 - 9,649,527 (+)Ensembl
RefSeq Acc Id: NM_001108068   ⟹   NP_001101538
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,256,276 - 10,300,174 (+)NCBI
mRatBN7.279,605,627 - 9,649,527 (+)NCBI
Rnor_6.0712,471,824 - 12,515,699 (+)NCBI
Rnor_5.0712,641,918 - 12,685,803 (+)NCBI
RGSC_v3.4711,117,835 - 11,161,863 (+)RGD
Celera77,781,528 - 7,825,383 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240908   ⟹   XP_006240970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,256,441 - 10,300,175 (+)NCBI
mRatBN7.279,605,790 - 9,649,529 (+)NCBI
Rnor_6.0712,471,925 - 12,515,700 (+)NCBI
Rnor_5.0712,641,918 - 12,685,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765095   ⟹   XP_008763317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,276,999 - 10,300,175 (+)NCBI
mRatBN7.279,624,902 - 9,649,529 (+)NCBI
Rnor_6.0712,491,691 - 12,515,700 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594814   ⟹   XP_017450303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,256,221 - 10,300,175 (+)NCBI
mRatBN7.279,605,572 - 9,649,529 (+)NCBI
Rnor_6.0712,471,805 - 12,515,700 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001101538   ⟸   NM_001108068
- UniProtKB: D3ZDU8 (UniProtKB/TrEMBL),   A6K8R8 (UniProtKB/TrEMBL),   A0A8I6A186 (UniProtKB/TrEMBL),   A6K8R9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240970   ⟸   XM_006240908
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZZ8 (UniProtKB/TrEMBL),   A6K8R6 (UniProtKB/TrEMBL),   A0A8I6A186 (UniProtKB/TrEMBL),   A6K8R9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763317   ⟸   XM_008765095
- Peptide Label: isoform X2
- UniProtKB: D3ZDU8 (UniProtKB/TrEMBL),   A6K8R8 (UniProtKB/TrEMBL),   A0A8I6A186 (UniProtKB/TrEMBL),   A6K8R9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450303   ⟸   XM_017594814
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000071247   ⟸   ENSRNOT00000077146
Ensembl Acc Id: ENSRNOP00000062533   ⟸   ENSRNOT00000068197
Ensembl Acc Id: ENSRNOP00000084971   ⟸   ENSRNOT00000099606
Protein Domains
SBNO alpha/beta   Strawberry notch AAA   Strawberry notch helicase C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZZ8-F1-model_v2 AlphaFold A0A0G2JZZ8 1-1351 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695036
Promoter ID:EPDNEW_R5560
Type:initiation region
Name:Sbno2_1
Description:strawberry notch homolog 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0712,471,829 - 12,471,889EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307194 AgrOrtholog
BioCyc Gene G2FUF-34915 BioCyc
Ensembl Genes ENSRNOG00000013987 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068197 ENTREZGENE
  ENSRNOT00000068197.5 UniProtKB/TrEMBL
  ENSRNOT00000077146 ENTREZGENE
  ENSRNOT00000077146.3 UniProtKB/TrEMBL
  ENSRNOT00000099606 ENTREZGENE
  ENSRNOT00000099606.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  SBNO_a/b_dom UniProtKB/TrEMBL
  SBNO_Helicase_C_dom UniProtKB/TrEMBL
  SNO-like UniProtKB/TrEMBL
  SNO_AAA UniProtKB/TrEMBL
KEGG Report rno:314619 UniProtKB/TrEMBL
NCBI Gene 314619 ENTREZGENE
PANTHER PTHR12706 UniProtKB/TrEMBL
  PTHR12706:SF5 UniProtKB/TrEMBL
Pfam AAA_34 UniProtKB/TrEMBL
  Helicase_C_4 UniProtKB/TrEMBL
  SBNO UniProtKB/TrEMBL
PhenoGen Sbno2 PhenoGen
RatGTEx ENSRNOG00000013987 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JZZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A186 ENTREZGENE, UniProtKB/TrEMBL
  A6K8R6 ENTREZGENE, UniProtKB/TrEMBL
  A6K8R8 ENTREZGENE, UniProtKB/TrEMBL
  A6K8R9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDU8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-21 Sbno2  strawberry notch homolog 2  Sbno2  strawberry notch homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sbno2  strawberry notch homolog 2 (Drosophila)  Stno_predicted  strawberry notch homolog (Drosophila) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Stno_predicted  strawberry notch homolog (Drosophila) (predicted)  RGD1307194_predicted  similar to KIAA0963 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1307194_predicted  similar to KIAA0963 protein (predicted)  LOC314619_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314619_predicted  similar to KIAA0963 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL