D7Rat156 Marker Search Result - Rat Genome Database

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Marker: D7Rat156

Symbol: D7Rat156
Previously known as: R0068-C04; oxsts11367; 
RGD ID: 38176
Expected Size: 240 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,616,649 - 9,616,889 (+)MAPPERmRatBN7.2
Rnor_6.0712,482,847 - 12,483,086NCBIRnor6.0
Rnor_5.0712,652,950 - 12,653,189UniSTSRnor5.0
RGSC_v3.4711,128,857 - 11,129,097RGDRGSC3.4
RGSC_v3.4711,128,858 - 11,129,097UniSTSRGSC3.4
RGSC_v3.1711,128,822 - 11,129,117RGD
Celera77,792,553 - 7,792,792UniSTS
FHH x ACI MapX16.76UniSTS
FHH x ACI MapX16.76RGD
Cytogenetic Map7q11UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   COP/OlaHsd  
Genes:   Sbno2  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTCAATCAACTCCCTCACCG
Reverse Primer GAGGAGAAAGCAAGCAAGGA
 
Template 
AGACTCTAAGAGGATCCTCTCCAGCCTCATGATAATATTTTCAAAGAAGAGGAGGAGAAAGCAA
GCAAGGACGACGATGGCACAGATACTTTGTTACCCATACACCTTAAGGAGGNTGAAACAGGAAG
ATTACAAGTTTAAGGCCAGGACAGGGCAAGGTAGTGATTACGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTATGTNTGTGTGTNTGTGNATACTGTGTGTGTGTGCNCATGC
CCCNTAGNCTACAGCCGGTGAGGGAGTTGATTGACAGACACGTGTTGGAAGACAGGTACCGAGN
CNCAATTCGTAATACATGGTCATAGTGTTNCCGTGTGAAATTGTTATCCGCNCACAATTACCAC
ANNACATNNGAG

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1307194Sbno2strawberry notch homolog 2796055729649529Rat

Nucleotide Sequences
GenBank Nucleotide AC099431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 314619 UniSTS
UniSTS 228108 UniSTS