Plekhm3 (pleckstrin homology domain containing M3) - Rat Genome Database

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Gene: Plekhm3 (pleckstrin homology domain containing M3) Rattus norvegicus
Analyze
Symbol: Plekhm3
Name: pleckstrin homology domain containing M3
RGD ID: 1307151
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in myoblast differentiation. Predicted to be located in Golgi apparatus and plasma membrane. Orthologous to human PLEKHM3 (pleckstrin homology domain containing M3); INTERACTS WITH 17alpha-ethynylestradiol; bisphenol A; bromobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Dapr; differentiation associated protein; LOC316455; pleckstrin homology domain containing, family M, member 1-like; pleckstrin homology domain containing, family M, member 3; pleckstrin homology domain-containing family M member 3; Plekhm1l; RGD1307151; similar to CG6613-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8973,659,998 - 73,819,079 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl973,664,817 - 73,799,503 (-)EnsemblGRCr8
mRatBN7.2966,166,233 - 66,325,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,166,321 - 66,325,294 (-)EnsemblmRatBN7.2
Rnor_6.0971,492,665 - 71,651,529 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,498,293 - 71,651,512 (-)Ensemblrn6Rnor6.0
Rnor_5.0970,935,154 - 71,074,261 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4963,442,057 - 63,583,879 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera963,571,202 - 63,730,053 (-)NCBICelera
RGSC_v3.1963,589,038 - 63,723,352 (-)NCBI
Cytogenetic Map9q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19028694  


Genomics

Comparative Map Data
Plekhm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8973,659,998 - 73,819,079 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl973,664,817 - 73,799,503 (-)EnsemblGRCr8
mRatBN7.2966,166,233 - 66,325,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,166,321 - 66,325,294 (-)EnsemblmRatBN7.2
Rnor_6.0971,492,665 - 71,651,529 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,498,293 - 71,651,512 (-)Ensemblrn6Rnor6.0
Rnor_5.0970,935,154 - 71,074,261 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4963,442,057 - 63,583,879 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera963,571,202 - 63,730,053 (-)NCBICelera
RGSC_v3.1963,589,038 - 63,723,352 (-)NCBI
Cytogenetic Map9q32NCBI
PLEKHM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382207,821,288 - 208,025,527 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2207,821,288 - 208,025,846 (-)Ensemblhg38GRCh38
GRCh372208,686,012 - 208,890,251 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,401,288 - 208,574,637 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2202,448,087 - 202,652,388 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2200,528,351 - 200,732,867 (-)NCBIHuRef
CHM1_12208,691,961 - 208,896,203 (-)NCBICHM1_1
T2T-CHM13v2.02208,295,515 - 208,499,792 (-)NCBIT2T-CHM13v2.0
Plekhm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,828,279 - 64,995,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,825,142 - 64,995,983 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38164,789,120 - 64,956,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,785,983 - 64,956,824 (-)Ensemblmm10GRCm38
MGSCv37164,835,695 - 65,003,398 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36164,723,397 - 64,891,100 (-)NCBIMGSCv36mm8
Celera165,290,516 - 65,457,493 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.76NCBI
Plekhm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554577,065,428 - 7,239,663 (+)Ensembl
ChiLan1.0NW_0049554577,065,443 - 7,239,663 (+)NCBIChiLan1.0ChiLan1.0
PLEKHM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,435,802 - 110,643,005 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,450,779 - 110,658,005 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,061,743 - 95,265,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,186,504 - 213,389,109 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,193,876 - 213,389,109 (-)EnsemblpanPan2panpan1.1
PLEKHM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13716,177,125 - 16,354,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3716,182,819 - 16,355,003 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3717,060,085 - 17,238,333 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03716,111,878 - 16,290,825 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3716,116,080 - 16,290,796 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13716,057,489 - 16,235,714 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03716,030,442 - 16,208,662 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03716,039,805 - 16,218,067 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plekhm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303164,288,243 - 164,503,017 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366313,960,725 - 4,138,096 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366313,954,774 - 4,138,079 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15110,994,410 - 111,185,324 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115110,989,123 - 111,185,928 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215122,623,253 - 122,671,379 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLEKHM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11093,612,617 - 93,816,814 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1093,616,714 - 93,816,476 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040105,553,005 - 105,758,658 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plekhm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247657,981,903 - 8,166,964 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247657,981,903 - 8,173,599 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Plekhm3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14138,675,018 - 138,833,587 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plekhm3
1699 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:66
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000032782, ENSRNOT00000058075
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
D9Got71  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2966,236,419 - 66,236,583 (+)MAPPERmRatBN7.2
Rnor_6.0971,562,658 - 71,562,821NCBIRnor6.0
Rnor_5.0971,004,320 - 71,004,483UniSTSRnor5.0
RGSC_v3.4963,506,542 - 63,506,706RGDRGSC3.4
RGSC_v3.4963,506,543 - 63,506,706UniSTSRGSC3.4
RGSC_v3.1963,653,524 - 63,653,688RGD
RH 3.4 Map9561.7UniSTS
RH 3.4 Map9561.7RGD
RH 2.0 Map9619.5RGD
Cytogenetic Map9q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000032782   ⟹   ENSRNOP00000030422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl973,686,303 - 73,799,491 (-)Ensembl
mRatBN7.2 Ensembl966,166,321 - 66,325,294 (-)Ensembl
Rnor_6.0 Ensembl971,498,293 - 71,651,512 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135781   ⟹   ENSRNOP00000104592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl973,664,817 - 73,799,503 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153205   ⟹   ENSRNOP00000103772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl973,664,817 - 73,799,491 (-)Ensembl
RefSeq Acc Id: XM_006245080   ⟹   XP_006245142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,002 (-)NCBI
mRatBN7.2966,166,233 - 66,325,312 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Rnor_5.0970,935,154 - 71,074,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596815   ⟹   XP_017452304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,061 (-)NCBI
mRatBN7.2966,166,233 - 66,325,321 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596816   ⟹   XP_017452305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,078 (-)NCBI
mRatBN7.2966,166,233 - 66,325,332 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596817   ⟹   XP_017452306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,993 (-)NCBI
mRatBN7.2966,166,233 - 66,325,280 (-)NCBI
Rnor_6.0971,492,665 - 71,651,419 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596818   ⟹   XP_017452307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,976 (-)NCBI
mRatBN7.2966,166,233 - 66,325,280 (-)NCBI
Rnor_6.0971,492,665 - 71,651,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596819   ⟹   XP_017452308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,984 (-)NCBI
mRatBN7.2966,166,233 - 66,325,321 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596820   ⟹   XP_017452309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,976 (-)NCBI
mRatBN7.2966,166,233 - 66,325,281 (-)NCBI
Rnor_6.0971,492,665 - 71,651,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084589   ⟹   XP_038940517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,666,864 - 73,819,061 (-)NCBI
mRatBN7.2966,173,106 - 66,325,322 (-)NCBI
RefSeq Acc Id: XM_039084591   ⟹   XP_038940519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,061 (-)NCBI
mRatBN7.2966,166,233 - 66,325,321 (-)NCBI
RefSeq Acc Id: XM_039084592   ⟹   XP_038940520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,795,818 (-)NCBI
mRatBN7.2966,166,233 - 66,296,991 (-)NCBI
RefSeq Acc Id: XM_039084593   ⟹   XP_038940521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,789,899 (-)NCBI
mRatBN7.2966,166,233 - 66,296,129 (-)NCBI
RefSeq Acc Id: XM_063267901   ⟹   XP_063123971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,694,013 - 73,819,079 (-)NCBI
RefSeq Acc Id: XM_063267902   ⟹   XP_063123972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,719,337 - 73,819,061 (-)NCBI
RefSeq Acc Id: XP_006245142   ⟸   XM_006245080
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452305   ⟸   XM_017596816
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452308   ⟸   XM_017596819
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452304   ⟸   XM_017596815
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452306   ⟸   XM_017596817
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452309   ⟸   XM_017596820
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452307   ⟸   XM_017596818
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000030422   ⟸   ENSRNOT00000032782
RefSeq Acc Id: XP_038940519   ⟸   XM_039084591
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038940520   ⟸   XM_039084592
- Peptide Label: isoform X5
- UniProtKB: A6IPI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940521   ⟸   XM_039084593
- Peptide Label: isoform X5
- UniProtKB: A6IPI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940517   ⟸   XM_039084589
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123971   ⟸   XM_063267901
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123972   ⟸   XM_063267902
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000104592   ⟸   ENSRNOT00000135781
Ensembl Acc Id: ENSRNOP00000103772   ⟸   ENSRNOT00000153205
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A959-F1-model_v2 AlphaFold D4A959 1-761 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696717
Promoter ID:EPDNEW_R7241
Type:single initiation site
Name:Plekhm3_1
Description:pleckstrin homology domain containing M3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0971,651,457 - 71,651,517EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307151 AgrOrtholog
BioCyc Gene G2FUF-27313 BioCyc
Ensembl Genes ENSRNOG00000023760 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032782.8 UniProtKB/TrEMBL
  ENSRNOT00000135781.1 UniProtKB/TrEMBL
  ENSRNOT00000153205 ENTREZGENE
  ENSRNOT00000153205.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro DEF8 UniProtKB/TrEMBL
  DUF4206 UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  PLEKHM3_PH_1 UniProtKB/TrEMBL
KEGG Report rno:316455 UniProtKB/TrEMBL
NCBI Gene 316455 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 3 UniProtKB/TrEMBL
Pfam DUF4206 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PhenoGen Plekhm3 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023760 RatGTEx
SMART DUF4206 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0ABK0L3E5_RAT UniProtKB/TrEMBL
  A0ABK0L4Z4_RAT UniProtKB/TrEMBL
  A6IPI7 ENTREZGENE, UniProtKB/TrEMBL
  D4A959 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Plekhm3  pleckstrin homology domain containing M3  Plekhm3  pleckstrin homology domain containing, family M, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Plekhm3  pleckstrin homology domain containing, family M, member 3  Plekhm1l  pleckstrin homology domain containing, family M, member 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-02 Plekhm1l  pleckstrin homology domain containing, family M, member 1-like  RGD1307151  similar to CG6613-PA   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1307151  similar to CG6613-PA   RGD1307151_predicted  similar to CG6613-PA (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1307151_predicted  similar to CG6613-PA (predicted)  LOC316455_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316455_predicted  similar to CG6613-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL