Lrrc57 (leucine rich repeat containing 57)

Advanced Search (OLGA)

Gene: Lrrc57 (leucine rich repeat containing 57) Rattus norvegicus

Analyze

Symbol:

Lrrc57

Name:

leucine rich repeat containing 57

RGD ID:

1307128

Description:

Predicted to be located in membrane. Orthologous to human LRRC57 (leucine rich repeat containing 57); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leucine-rich repeat-containing protein 57; leucine-rich repeat-containing protein 57-like; LOC100910478; LOC311346; MGC109337; RGD1307128; similar to RIKEN cDNA 2810002D13 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LRRC57 (leucine rich repeat containing 57)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, PhylomeDB
Mus musculus (house mouse):	Lrrc57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lrrc57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LRRC57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LRRC57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lrrc57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LRRC57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LRRC57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lrrc57 (leucine rich repeat containing 57)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Lrrc57 (leucine rich repeat containing 57)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LRRC57 (leucine rich repeat containing 57)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lrrc57 (leucine rich repeat containing 57)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3040	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZK546.2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lrrc57	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	127,998,535 - 128,007,004 (-)	NCBI		GRCr8
mRatBN7.2	3	107,544,786 - 107,553,256 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	107,547,405 - 107,553,256 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	111,222,226 - 111,228,070 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	119,817,799 - 119,823,643 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	117,478,192 - 117,484,036 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	112,365,936 - 112,371,787 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	112,365,938 - 112,385,528 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	3	112,370,057 - 112,371,664 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	118,912,832 - 118,918,683 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	107,365,961 - 107,371,816 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	107,262,390 - 107,268,061 (-)	NCBI
Celera	3	106,454,979 - 106,460,831 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

gentamycin (EXP)

methyl methanesulfonate (ISO)

paracetamol (EXP)

sodium arsenite (ISO)

testosterone (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:19056867	PMID:21873635	PMID:22871113	PMID:23376485	PMID:23533145

Genomics

Comparative Map Data

Lrrc57
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	127,998,535 - 128,007,004 (-)	NCBI		GRCr8
mRatBN7.2	3	107,544,786 - 107,553,256 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	107,547,405 - 107,553,256 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	111,222,226 - 111,228,070 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	119,817,799 - 119,823,643 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	117,478,192 - 117,484,036 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	112,365,936 - 112,371,787 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	112,365,938 - 112,385,528 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	3	112,370,057 - 112,371,664 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	118,912,832 - 118,918,683 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	107,365,961 - 107,371,816 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	107,262,390 - 107,268,061 (-)	NCBI
Celera	3	106,454,979 - 106,460,831 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

LRRC57
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	42,528,327 - 42,548,793 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	42,537,820 - 42,548,802 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	42,830,027 - 42,840,991 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	40,622,014 - 40,628,292 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	19,602,426 - 19,608,708 (-)	NCBI		Celera
Cytogenetic Map	15	q15.2	NCBI
HuRef	15	19,682,473 - 19,688,755 (-)	NCBI		HuRef
CHM1_1	15	42,953,162 - 42,959,444 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	40,334,371 - 40,354,843 (-)	NCBI		T2T-CHM13v2.0

Lrrc57
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	120,434,719 - 120,439,989 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	120,434,719 - 120,440,001 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	120,604,238 - 120,609,508 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	120,604,238 - 120,609,520 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	120,429,974 - 120,435,244 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	120,295,679 - 120,300,715 (-)	NCBI		MGSCv36	mm8
Celera	2	121,757,029 - 121,762,300 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.37	NCBI

Lrrc57
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	9,230,362 - 9,237,799 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	9,230,362 - 9,237,799 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRRC57
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	31,788,619 - 31,799,619 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	35,945,583 - 35,956,606 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	21,499,139 - 21,510,154 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	39,659,381 - 39,666,068 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	39,659,387 - 39,666,068 (-)	Ensembl	panpan1.1		panPan2

LRRC57
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	9,497,328 - 9,502,235 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	9,554,594 - 9,559,683 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	9,632,152 - 9,637,242 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	9,632,159 - 9,637,170 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	9,551,416 - 9,556,506 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	9,657,980 - 9,663,060 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	9,790,695 - 9,795,782 (-)	NCBI		UU_Cfam_GSD_1.0

Lrrc57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	87,974,785 - 87,978,759 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	5,820,579 - 5,827,084 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	5,822,165 - 5,826,894 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC57
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	128,839,204 - 128,847,431 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	128,839,137 - 128,845,749 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	143,731,688 - 143,738,556 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC57
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	40,427,588 - 40,434,108 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	40,427,887 - 40,432,553 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	100,578,130 - 100,584,784 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc57
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	9,648,956 - 9,656,754 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624804	9,648,956 - 9,656,464 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Lrrc57
25 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	383
Count of miRNA genes:	227
Interacting mature miRNAs:	258
Transcripts:	ENSRNOT00000012636, ENSRNOT00000049756
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Markers in Region

BE101835

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	107,551,388 - 107,551,557 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	112,383,844 - 112,384,012	NCBI	Rnor6.0
Rnor_6.0	3	112,369,920 - 112,370,088	NCBI	Rnor6.0
Rnor_5.0	3	118,930,740 - 118,930,908	UniSTS	Rnor5.0
Rnor_5.0	3	118,916,816 - 118,916,984	UniSTS	Rnor5.0
RGSC_v3.4	3	107,369,949 - 107,370,117	UniSTS	RGSC3.4
Celera	3	106,458,964 - 106,459,132	UniSTS
RH 3.4 Map	3	941.6	UniSTS
Cytogenetic Map	3	q35	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH134600

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	107,547,606 - 107,547,786 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	112,366,140 - 112,366,319	NCBI	Rnor6.0
Rnor_5.0	3	118,913,036 - 118,913,215	UniSTS	Rnor5.0
RGSC_v3.4	3	107,366,165 - 107,366,344	UniSTS	RGSC3.4
Celera	3	106,455,183 - 106,455,362	UniSTS
RH 3.4 Map	3	940.9	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
18	22	70	202	161	160	98	50	98	12	373	165	163	76	108	62

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV111644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012636 ⟹ ENSRNOP00000012636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	112,370,057 - 112,371,664 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000049756 ⟹ ENSRNOP00000050922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	107,547,405 - 107,553,256 (-)	Ensembl
Rnor_6.0 Ensembl	3	112,365,938 - 112,385,528 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079606 ⟹ ENSRNOP00000075733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	112,370,057 - 112,371,664 (-)	Ensembl

RefSeq Acc Id:

NM_001012354 ⟹ NP_001012354

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	128,001,152 - 128,007,004 (-)	NCBI
mRatBN7.2	3	107,547,403 - 107,553,256 (-)	NCBI
Rnor_6.0	3	112,365,936 - 112,371,787 (-)	NCBI
Rnor_5.0	3	118,912,832 - 118,918,683 (-)	NCBI
RGSC_v3.4	3	107,365,961 - 107,371,816 (-)	RGD
Celera	3	106,454,979 - 106,460,831 (-)	RGD

Sequence:

show sequence

AGTAACCCAGCTGCACTCGGCGCGGACGCTGGGTCCCACGGGTTGGCGGCAGCCATGGCTCCAA
CGCACCTCTGGAACTGGCGCGAGGAGTGAGGGGCACACAGCGAACGTGCGCGCGGTTTGATGAT
GTCACAGGGCGTTCCTACCCGGGCGGAAGCCCTGGGAGCGCGTCTCAGGCGAGCGCGGGTCCCG
GGTGTTCCCTGGTGGAGTCTTCTCTGCACTGAGCGGTAGGAGGCGAGTCTTGAGCTCCCTGTTC
CGGCAGCAGCTATCGGAGGCTCCCTGGCCCTTAACTCAGGGAACTGAGCCGTGGTGCTAGGATG
GGAAACAGTGCCCTCCGTGCTCATGTGGAAACAGCGCAGAAAACTGGTGTCTTTCAGCTTAAAG
ACCGTGGTCTGACCGAGTTCCCCTCAGAGTTGCAGAAGCTGACAAGCAATCTTAGGACCATCGA
TTTGTCCAACAACAAGATCGACAGCCTACCACCTCTGATAATAGGAAAGTTCACTCTGCTAAAG
AGTCTCTCTCTCAACAACAACAAACTGACTGTTCTACCTGATGAATTATGCAATCTGAAAAAAC
TAGAGACACTAAGTCTCAACAACAATCACCTGAGAGAGCTACCGTCTTCCTTCGGGCAGCTGTC
GGCTCTGAAGACCCTGAGCCTCTCTGGGAATCAGCTGGGAGCATTACCACCCCAGCTTTGTAGC
TTGAGGCATCTGGATGTAGTAGATCTCTCCAAAAACCAGATTCGGAGTATACCTGACACAGTCG
GGGAGCTGCAGGCCATCGAACTCAATCTCAACCAGAACCAGATATCTCAGATCTCCGTGAGGAT
ATCCTGCTGTCCTCGCCTCAAAGTCCTCCGGCTGGAAGAGAACTGTCTTGAGCTCAGCATGCTT
CCACAGAGCATCCTCAGTGATTCCCAAATCTGCCTGCTTGCCGTGGAAGGCAATCTCTTTGAAA
TAAAGAAACTTCGAGAACTAGAGGGTTATGATAAGTACATGGAAAGGTTCACAGCCACCAAGAA
GAAATTTGCATGATGTTCTCCAGGACAATGGGACACTGACTTGGAACTCTTTTGGAATCTGACT
GAGTCAAAGGCTCCTGATGATGGATACGCTGCGGACATGCTGCAGATAACATTTTACTCAATGA
CTTTTTCCTCTTTAGGACTATGCCAGATAAGCTAAAGGAAAAGGATTTAGGAGTAGGAGACAGG
AAGAACCCTTCATCTTCAGCCATGTAGGGCCGTGGCCAGTGCTGATCTTCAAACCATCATTAGT
TGGGCTCTGAGGAGCAGTAAGTAGTTGCTGTTCATGCAGGCGACGACAGAGGGAGCCGTGCCGC
AGCCTCAGACTGTTGAGTTGCAGACGGTCAGCTTTCATAAAGTCAGTCCCATCACCTCTGTGTT
AACACTTCATATTTTTTATGAAATTCTAATTTGTGGGAAAACATGTATGACTAAGGGTGAATGC
TTTTAGCAGTGTTTACACTTGGAGTTTGGGATGTACATACATATGTAGCTGTCTTAAAGAGATC
TTTGTCAAGAGGAGCACCAACACAACAGCCACCAAGAATGTTCTCCAAGGCTGCAGTAGCAAAT
TTTTTTTACTATTGCAGGTGCCTTATTGGTAGAGGGCTCTGAAAGAGCTAAAACTATATGCAAA
AATTATAAAAACTTTTTGTTTTTAGACAGGTTTTTGCTATGTAGCCCAGGCTGGCCTCACCCCA
CCTCAAACCTCTCCTTTCCCCCACATGCTGGGATTATAGGCATGCGCCACACAGCCTACTTGTA
AGATTTTAAATTTTAGTAATCAAGATTTTCTTGAAGCTTTGTTAAAAATCATGTGCTATTCTGG
TAACTCCTCCCCTTTTTGTATTTATAACTACTAATCAGATTACCTTCAAGAAAACCATTGCTAC
AATATTTTAAAATAACCTATGTTTATCATGGTTATTCTCTGAATGAGAGAATATTCTAAATAAA
ATATTTTTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234777 ⟹ XP_006234839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,998,535 - 128,006,968 (-)	NCBI
mRatBN7.2	3	107,544,786 - 107,553,210 (-)	NCBI
Rnor_6.0	3	112,365,936 - 112,371,688 (-)	NCBI
Rnor_5.0	3	118,912,832 - 118,918,683 (-)	NCBI

Sequence:

show sequence

CACAGCGAACGTGCGCGCGGTTTGATGATGTCACAGGGCGTTCCTACCCGGGCGGAAGCCCTGG
GAGCGCGTCTCAGGGAACTGAGCCGTGGTGCTAGGATGGGAAACAGTGCCCTCCGTGCTCATGT
GGAAACAGCGCAGAAAACTGGTGTCTTTCAGCTTAAAGACCGTGGTCTGACCGAGTTCCCCTCA
GAGTTGCAGAAGCTGACAAGCAATCTTAGGACCATCGATTTGTCCAACAACAAGATCGACAGCC
TACCACCTCTGATAATAGGAAAGTTCACTCTGCTAAAGAGTCTCTCTCTCAACAACAACAAACT
GACTGTTCTACCTGATGAATTATGCAATCTGAAAAAACTAGAGACACTAAGTCTCAACAACAAT
CACCTGAGAGAGCTACCGTCTTCCTTCGGGCAGCTGTCGGCTCTGAAGACCCTGAGCCTCTCTG
GGAATCAGCTGGGAGCATTACCACCCCAGCTTTGTAGCTTGAGGCATCTGGATGTAGTAGATCT
CTCCAAAAACCAGATTCGGAGTATACCTGACACAGTCGGGGAGCTGCAGGCCATCGAACTCAAT
CTCAACCAGAACCAGATATCTCAGATCTCCGTGAGGATATCCTGCTGTCCTCGCCTCAAAGTCC
TCCGGCTGGAAGAGAACTGTCTTGAGCTCAGCATGCTTCCACAGAGCATCCTCAGTGATTCCCA
AATCTGCCTGCTTGCCGTGGAAGGCAATCTCTTTGAAATAAAGAAACTTCGAGAACTAGAGGGT
TATGATAAGTACATGGAAAGGTTCACAGCCACCAAGAAGAAATTTGCATGATGTTCTCCAGGAC
AATGGGACACTGACTTGGAACTCTTTTGGAATCTGACTGAGTCAAAGGCTCCTGATGATGGATA
CGCTGCGGACATGCTGCAGATAACATTTTACTCAATGACTTTTTCCTCTTTAGGACTATGCCAG
ATAAGCTAAAGGAAAAGGATTTAGGAGTAGGAGACAGGAAGAACCCTTCATCTTCAGCCATGTA
GGGCCGTGGCCAGTGCTGATCTTCAAACCATCATTAGTTGGGCTCTGAGGAGCAGTAAGTAGTT
GCTGTTCATGCAGGCGACGACAGAGGGAGCCGTGCCGCAGCCTCAGACTGTTGAGTTGCAGACG
GTCAGCTTTCATAAAGTCAGTCCCATCACCTCTGTGTTAACACTTCATATTTTTTATGAAATTC
TAATTTGTGGGAAAACATGTATGACTAAGGGTGAATGCTTTTAGCAGTGTTTACACTTGGAGTT
TGGGATGTACATACATATGTAGCTGTCTTAAAGAGATCTTTGTCAAGAGGAGCACCAACACAAC
AGCCACCAAGAATGTTCTCCAAGGCTGCAGTAGCAAATTTTTTTTACTATTGCAGGTGCCTTAT
TGGTAGAGGGCTCTGAAAGAGCTAAAACTATATGCAAAAATTATAAAAACTTTTTGTTTTTAGA
CAGGTTTTTGCTATGTAGCCCAGGCTGGCCTCACCCCACCTCAAACCTCTCCTTTCCCCCACAT
GCTGGGATTATAGGCATGCGCCACACAGCCTACTTGTAAGATTTTAAATTTTAGTAATCAAGAT
TTTCTTGAAGCTTTGTTAAAAATCATGTGCTATTCTGGTAACTCCTCCCCTTTTTGTATTTATA
ACTACTAATCAGATTACCTTCAAGAAAACCATTGCTACAATATTTTAAAATAACCTATGTTTAT
CATGGTTATTCTCTGAATGAGAGAATATTCTAAATAAAATATTTTTAGTGAA

hide sequence

RefSeq Acc Id:

XM_006234778 ⟹ XP_006234840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,998,535 - 128,006,907 (-)	NCBI
mRatBN7.2	3	107,544,786 - 107,553,157 (-)	NCBI
Rnor_6.0	3	112,365,936 - 112,371,631 (-)	NCBI
Rnor_5.0	3	118,912,832 - 118,918,683 (-)	NCBI

Sequence:

show sequence

GCCCTGGGAGCGCGTCTCAGGCGAGCGCGGGTCCCGGGTGTTCCCTGGTGGAGTCTTCTCTGCA
CTGAGCGGTAGGAGGGAACTGAGCCGTGGTGCTAGGATGGGAAACAGTGCCCTCCGTGCTCATG
TGGAAACAGCGCAGAAAACTGGTGTCTTTCAGCTTAAAGACCGTGGTCTGACCGAGTTCCCCTC
AGAGTTGCAGAAGCTGACAAGCAATCTTAGGACCATCGATTTGTCCAACAACAAGATCGACAGC
CTACCACCTCTGATAATAGGAAAGTTCACTCTGCTAAAGAGTCTCTCTCTCAACAACAACAAAC
TGACTGTTCTACCTGATGAATTATGCAATCTGAAAAAACTAGAGACACTAAGTCTCAACAACAA
TCACCTGAGAGAGCTACCGTCTTCCTTCGGGCAGCTGTCGGCTCTGAAGACCCTGAGCCTCTCT
GGGAATCAGCTGGGAGCATTACCACCCCAGCTTTGTAGCTTGAGGCATCTGGATGTAGTAGATC
TCTCCAAAAACCAGATTCGGAGTATACCTGACACAGTCGGGGAGCTGCAGGCCATCGAACTCAA
TCTCAACCAGAACCAGATATCTCAGATCTCCGTGAGGATATCCTGCTGTCCTCGCCTCAAAGTC
CTCCGGCTGGAAGAGAACTGTCTTGAGCTCAGCATGCTTCCACAGAGCATCCTCAGTGATTCCC
AAATCTGCCTGCTTGCCGTGGAAGGCAATCTCTTTGAAATAAAGAAACTTCGAGAACTAGAGGG
TTATGATAAGTACATGGAAAGGTTCACAGCCACCAAGAAGAAATTTGCATGATGTTCTCCAGGA
CAATGGGACACTGACTTGGAACTCTTTTGGAATCTGACTGAGTCAAAGGCTCCTGATGATGGAT
ACGCTGCGGACATGCTGCAGATAACATTTTACTCAATGACTTTTTCCTCTTTAGGACTATGCCA
GATAAGCTAAAGGAAAAGGATTTAGGAGTAGGAGACAGGAAGAACCCTTCATCTTCAGCCATGT
AGGGCCGTGGCCAGTGCTGATCTTCAAACCATCATTAGTTGGGCTCTGAGGAGCAGTAAGTAGT
TGCTGTTCATGCAGGCGACGACAGAGGGAGCCGTGCCGCAGCCTCAGACTGTTGAGTTGCAGAC
GGTCAGCTTTCATAAAGTCAGTCCCATCACCTCTGTGTTAACACTTCATATTTTTTATGAAATT
CTAATTTGTGGGAAAACATGTATGACTAAGGGTGAATGCTTTTAGCAGTGTTTACACTTGGAGT
TTGGGATGTACATACATATGTAGCTGTCTTAAAGAGATCTTTGTCAAGAGGAGCACCAACACAA
CAGCCACCAAGAATGTTCTCCAAGGCTGCAGTAGCAAATTTTTTTTACTATTGCAGGTGCCTTA
TTGGTAGAGGGCTCTGAAAGAGCTAAAACTATATGCAAAAATTATAAAAACTTTTTGTTTTTAG
ACAGGTTTTTGCTATGTAGCCCAGGCTGGCCTCACCCCACCTCAAACCTCTCCTTTCCCCCACA
TGCTGGGATTATAGGCATGCGCCACACAGCCTACTTGTAAGATTTTAAATTTTAGTAATCAAGA
TTTTCTTGAAGCTTTGTTAAAAATCATGTGCTATTCTGGTAACTCCTCCCCTTTTTGTATTTAT
AACTACTAATCAGATTACCTTCAAGAAAACCATTGCTACAATATTTTAAAATAACCTATGTTTA
TCATGGTTATTCTCTGAATGAGAGAATATTCTAAATAAAATATTTTTAGTGAA

hide sequence

RefSeq Acc Id:

XM_006234779 ⟹ XP_006234841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,998,535 - 128,006,832 (-)	NCBI
mRatBN7.2	3	107,544,786 - 107,553,080 (-)	NCBI
Rnor_6.0	3	112,365,936 - 112,371,561 (-)	NCBI
Rnor_5.0	3	118,912,832 - 118,918,683 (-)	NCBI

Sequence:

show sequence

GGTAGGAGGCGAGTCTTGAGCTCCCTGTTCCGGCAGCAGCTATCGGAGGCTCCCTGGCCCTTAA
CTCAGGTGCCAACGCAGCAGGATCTTGTGGGAACTGAGCCGTGGTGCTAGGATGGGAAACAGTG
CCCTCCGTGCTCATGTGGAAACAGCGCAGAAAACTGGTGTCTTTCAGCTTAAAGACCGTGGTCT
GACCGAGTTCCCCTCAGAGTTGCAGAAGCTGACAAGCAATCTTAGGACCATCGATTTGTCCAAC
AACAAGATCGACAGCCTACCACCTCTGATAATAGGAAAGTTCACTCTGCTAAAGAGTCTCTCTC
TCAACAACAACAAACTGACTGTTCTACCTGATGAATTATGCAATCTGAAAAAACTAGAGACACT
AAGTCTCAACAACAATCACCTGAGAGAGCTACCGTCTTCCTTCGGGCAGCTGTCGGCTCTGAAG
ACCCTGAGCCTCTCTGGGAATCAGCTGGGAGCATTACCACCCCAGCTTTGTAGCTTGAGGCATC
TGGATGTAGTAGATCTCTCCAAAAACCAGATTCGGAGTATACCTGACACAGTCGGGGAGCTGCA
GGCCATCGAACTCAATCTCAACCAGAACCAGATATCTCAGATCTCCGTGAGGATATCCTGCTGT
CCTCGCCTCAAAGTCCTCCGGCTGGAAGAGAACTGTCTTGAGCTCAGCATGCTTCCACAGAGCA
TCCTCAGTGATTCCCAAATCTGCCTGCTTGCCGTGGAAGGCAATCTCTTTGAAATAAAGAAACT
TCGAGAACTAGAGGGTTATGATAAGTACATGGAAAGGTTCACAGCCACCAAGAAGAAATTTGCA
TGATGTTCTCCAGGACAATGGGACACTGACTTGGAACTCTTTTGGAATCTGACTGAGTCAAAGG
CTCCTGATGATGGATACGCTGCGGACATGCTGCAGATAACATTTTACTCAATGACTTTTTCCTC
TTTAGGACTATGCCAGATAAGCTAAAGGAAAAGGATTTAGGAGTAGGAGACAGGAAGAACCCTT
CATCTTCAGCCATGTAGGGCCGTGGCCAGTGCTGATCTTCAAACCATCATTAGTTGGGCTCTGA
GGAGCAGTAAGTAGTTGCTGTTCATGCAGGCGACGACAGAGGGAGCCGTGCCGCAGCCTCAGAC
TGTTGAGTTGCAGACGGTCAGCTTTCATAAAGTCAGTCCCATCACCTCTGTGTTAACACTTCAT
ATTTTTTATGAAATTCTAATTTGTGGGAAAACATGTATGACTAAGGGTGAATGCTTTTAGCAGT
GTTTACACTTGGAGTTTGGGATGTACATACATATGTAGCTGTCTTAAAGAGATCTTTGTCAAGA
GGAGCACCAACACAACAGCCACCAAGAATGTTCTCCAAGGCTGCAGTAGCAAATTTTTTTTACT
ATTGCAGGTGCCTTATTGGTAGAGGGCTCTGAAAGAGCTAAAACTATATGCAAAAATTATAAAA
ACTTTTTGTTTTTAGACAGGTTTTTGCTATGTAGCCCAGGCTGGCCTCACCCCACCTCAAACCT
CTCCTTTCCCCCACATGCTGGGATTATAGGCATGCGCCACACAGCCTACTTGTAAGATTTTAAA
TTTTAGTAATCAAGATTTTCTTGAAGCTTTGTTAAAAATCATGTGCTATTCTGGTAACTCCTCC
CCTTTTTGTATTTATAACTACTAATCAGATTACCTTCAAGAAAACCATTGCTACAATATTTTAA
AATAACCTATGTTTATCATGGTTATTCTCTGAATGAGAGAATATTCTAAATAAAATATTTTTAG
TGAA

hide sequence

RefSeq Acc Id:

XM_006234780 ⟹ XP_006234842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,998,535 - 128,006,881 (-)	NCBI
mRatBN7.2	3	107,544,786 - 107,553,136 (-)	NCBI
Rnor_6.0	3	112,365,936 - 112,371,680 (-)	NCBI
Rnor_5.0	3	118,912,832 - 118,918,683 (-)	NCBI

Sequence:

show sequence

ACGTGCGCGCGGTTTGATGATGTCACAGGGCGTTCCTACCCGGGCGGAAGCCCTGGGAGCGCGT
CTCAGGCGAGCGCGGGTCCCGGGTGTTCCCTGGTGGAGTCTTCTCTGCACTGAGCGGGAACTGA
GCCGTGGTGCTAGGATGGGAAACAGTGCCCTCCGTGCTCATGTGGAAACAGCGCAGAAAACTGG
TGTCTTTCAGCTTAAAGACCGTGGTCTGACCGAGTTCCCCTCAGAGTTGCAGAAGCTGACAAGC
AATCTTAGGACCATCGATTTGTCCAACAACAAGATCGACAGCCTACCACCTCTGATAATAGGAA
AGTTCACTCTGCTAAAGAGTCTCTCTCTCAACAACAACAAACTGACTGTTCTACCTGATGAATT
ATGCAATCTGAAAAAACTAGAGACACTAAGTCTCAACAACAATCACCTGAGAGAGCTACCGTCT
TCCTTCGGGCAGCTGTCGGCTCTGAAGACCCTGAGCCTCTCTGGGAATCAGCTGGGAGCATTAC
CACCCCAGCTTTGTAGCTTGAGGCATCTGGATGTAGTAGATCTCTCCAAAAACCAGATTCGGAG
TATACCTGACACAGTCGGGGAGCTGCAGGCCATCGAACTCAATCTCAACCAGAACCAGATATCT
CAGATCTCCGTGAGGATATCCTGCTGTCCTCGCCTCAAAGTCCTCCGGCTGGAAGAGAACTGTC
TTGAGCTCAGCATGCTTCCACAGAGCATCCTCAGTGATTCCCAAATCTGCCTGCTTGCCGTGGA
AGGCAATCTCTTTGAAATAAAGAAACTTCGAGAACTAGAGGGTTATGATAAGTACATGGAAAGG
TTCACAGCCACCAAGAAGAAATTTGCATGATGTTCTCCAGGACAATGGGACACTGACTTGGAAC
TCTTTTGGAATCTGACTGAGTCAAAGGCTCCTGATGATGGATACGCTGCGGACATGCTGCAGAT
AACATTTTACTCAATGACTTTTTCCTCTTTAGGACTATGCCAGATAAGCTAAAGGAAAAGGATT
TAGGAGTAGGAGACAGGAAGAACCCTTCATCTTCAGCCATGTAGGGCCGTGGCCAGTGCTGATC
TTCAAACCATCATTAGTTGGGCTCTGAGGAGCAGTAAGTAGTTGCTGTTCATGCAGGCGACGAC
AGAGGGAGCCGTGCCGCAGCCTCAGACTGTTGAGTTGCAGACGGTCAGCTTTCATAAAGTCAGT
CCCATCACCTCTGTGTTAACACTTCATATTTTTTATGAAATTCTAATTTGTGGGAAAACATGTA
TGACTAAGGGTGAATGCTTTTAGCAGTGTTTACACTTGGAGTTTGGGATGTACATACATATGTA
GCTGTCTTAAAGAGATCTTTGTCAAGAGGAGCACCAACACAACAGCCACCAAGAATGTTCTCCA
AGGCTGCAGTAGCAAATTTTTTTTACTATTGCAGGTGCCTTATTGGTAGAGGGCTCTGAAAGAG
CTAAAACTATATGCAAAAATTATAAAAACTTTTTGTTTTTAGACAGGTTTTTGCTATGTAGCCC
AGGCTGGCCTCACCCCACCTCAAACCTCTCCTTTCCCCCACATGCTGGGATTATAGGCATGCGC
CACACAGCCTACTTGTAAGATTTTAAATTTTAGTAATCAAGATTTTCTTGAAGCTTTGTTAAAA
ATCATGTGCTATTCTGGTAACTCCTCCCCTTTTTGTATTTATAACTACTAATCAGATTACCTTC
AAGAAAACCATTGCTACAATATTTTAAAATAACCTATGTTTATCATGGTTATTCTCTGAATGAG
AGAATATTCTAAATAAAATATTTTTAGTGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012354	(Get FASTA)	NCBI Sequence Viewer
	XP_006234839	(Get FASTA)	NCBI Sequence Viewer
	XP_006234840	(Get FASTA)	NCBI Sequence Viewer
	XP_006234841	(Get FASTA)	NCBI Sequence Viewer
	XP_006234842	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89966	(Get FASTA)	NCBI Sequence Viewer
	EDL79954	(Get FASTA)	NCBI Sequence Viewer
	EDL79955	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050922.5
	ENSRNOP00055002639
	ENSRNOP00060041279
	ENSRNOP00065036328
GenBank Protein	Q5FVI3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012354 ⟸ NM_001012354

- UniProtKB:

Q5FVI3 (UniProtKB/Swiss-Prot), A6HPK4 (UniProtKB/TrEMBL), A6HPK3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLL
KSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSSFGQLSALKTLSLSGNQLGALPPQLC
SLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQISVRISCCPRLKVLRLEENCLELSM
LPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA

hide sequence

RefSeq Acc Id:	XP_006234839 ⟸ XM_006234777
- Peptide Label:	isoform X1
- UniProtKB:	A6HPK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSQGVPTRAEALGARLRELSRGARMGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSN LRTIDLSNNKIDSLPPLIIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSS FGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQ ISVRISCCPRLKVLRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERF TATKKKFA hide sequence

RefSeq Acc Id:	XP_006234842 ⟸ XM_006234780
- Peptide Label:	isoform X3
- UniProtKB:	A6HPK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSQGVPTRAEALGARLRRARVPGVPWWSLLCTERELSRGARMGNSALRAHVETAQKTGVFQLK DRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLLKSLSLNNNKLTVLPDELCNLKK LETLSLNNNHLRELPSSFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDLSKNQIRSIPDTV GELQAIELNLNQNQISQISVRISCCPRLKVLRLEENCLELSMLPQSILSDSQICLLAVEGNLFE IKKLRELEGYDKYMERFTATKKKFA hide sequence

RefSeq Acc Id:	XP_006234840 ⟸ XM_006234778
- Peptide Label:	isoform X2
- UniProtKB:	Q5FVI3 (UniProtKB/Swiss-Prot), A6HPK4 (UniProtKB/TrEMBL), A6HPK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLL KSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSSFGQLSALKTLSLSGNQLGALPPQLC SLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQISVRISCCPRLKVLRLEENCLELSM LPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA hide sequence

RefSeq Acc Id:	XP_006234841 ⟸ XM_006234779
- Peptide Label:	isoform X2
- UniProtKB:	Q5FVI3 (UniProtKB/Swiss-Prot), A6HPK4 (UniProtKB/TrEMBL), A6HPK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLL KSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSSFGQLSALKTLSLSGNQLGALPPQLC SLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQISVRISCCPRLKVLRLEENCLELSM LPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA hide sequence

Ensembl Acc Id:

ENSRNOP00000075733 ⟸ ENSRNOT00000079606

Ensembl Acc Id:

ENSRNOP00000012636 ⟸ ENSRNOT00000012636

Ensembl Acc Id:

ENSRNOP00000050922 ⟸ ENSRNOT00000049756

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FVI3-F1-model_v2	AlphaFold	Q5FVI3	1-239	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307128	AgrOrtholog
BioCyc Gene	G2FUF-48160	BioCyc
Ensembl Genes	ENSRNOG00000009143	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000048310	Ensembl
	ENSRNOG00055002224	UniProtKB/Swiss-Prot
	ENSRNOG00060028465	UniProtKB/Swiss-Prot
	ENSRNOG00065025679	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000049756.6	UniProtKB/Swiss-Prot
	ENSRNOT00055003534	UniProtKB/Swiss-Prot
	ENSRNOT00060049487	UniProtKB/Swiss-Prot
	ENSRNOT00065044251	UniProtKB/Swiss-Prot
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7314989	IMAGE-MGC_LOAD
InterPro	Leu-rich_rpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LRR_domain-containing	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:311346	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:109337	IMAGE-MGC_LOAD
NCBI Gene	311346	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47-LIKE PROTEIN	UniProtKB/TrEMBL
	PTHR48051	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZGC:77287	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	LRR_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LRR_8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Lrrc57	PhenoGen
PRINTS	LEURICHRPT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009143	RatGTEx
	ENSRNOG00000048310	RatGTEx
	ENSRNOG00055002224	RatGTEx
	ENSRNOG00060028465	RatGTEx
	ENSRNOG00065025679	RatGTEx
SMART	LRR_BAC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6HPK3	ENTREZGENE, UniProtKB/TrEMBL
	A6HPK4	ENTREZGENE, UniProtKB/TrEMBL
	LRC57_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Lrrc57	leucine rich repeat containing 57	LOC100910478	leucine-rich repeat-containing protein 57-like	Data merged from RGD:6498299	737654	PROVISIONAL
2012-07-05	LOC100910478	leucine-rich repeat-containing protein 57-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-07	Lrrc57	leucine rich repeat containing 57	RGD1307128	similar to RIKEN cDNA 2810002D13 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1307128	similar to RIKEN cDNA 2810002D13 gene	RGD1307128_predicted	similar to RIKEN cDNA 2810002D13 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307128_predicted	similar to RIKEN cDNA 2810002D13 gene (predicted)	LOC311346_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311346_predicted	similar to RIKEN cDNA 2810002D13 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar