Ndufb9 (NADH:ubiquinone oxidoreductase subunit B9) - Rat Genome Database

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Gene: Ndufb9 (NADH:ubiquinone oxidoreductase subunit B9) Rattus norvegicus
Analyze
Symbol: Ndufb9
Name: NADH:ubiquinone oxidoreductase subunit B9
RGD ID: 1307114
Description: Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 24. Orthologous to human NDUFB9 (NADH:ubiquinone oxidoreductase subunit B9); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299954; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,370,423 - 92,376,841 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl792,370,467 - 92,379,955 (+)EnsemblGRCr8
mRatBN7.2790,480,948 - 90,487,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx792,370,572 - 92,376,991 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0794,571,728 - 94,578,147 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0794,398,995 - 94,405,407 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0798,813,062 - 98,819,408 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)Ensemblrn6Rnor6.0
Rnor_5.0799,411,587 - 99,417,933 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4795,949,322 - 95,955,668 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera787,246,352 - 87,252,698 (+)NCBICelera
RGSC_v3.1795,983,544 - 95,989,916 (-)NCBI
Cytogenetic Map7q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:12611891   PMID:12865426   PMID:14651853   PMID:18614015   PMID:23376485   PMID:27626371   PMID:28844695   PMID:31505169  


Genomics

Comparative Map Data
Ndufb9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,370,423 - 92,376,841 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl792,370,467 - 92,379,955 (+)EnsemblGRCr8
mRatBN7.2790,480,948 - 90,487,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx792,370,572 - 92,376,991 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0794,571,728 - 94,578,147 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0794,398,995 - 94,405,407 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0798,813,062 - 98,819,408 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)Ensemblrn6Rnor6.0
Rnor_5.0799,411,587 - 99,417,933 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4795,949,322 - 95,955,668 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera787,246,352 - 87,252,698 (+)NCBICelera
RGSC_v3.1795,983,544 - 95,989,916 (-)NCBI
Cytogenetic Map7q33NCBI
NDUFB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388124,539,123 - 124,549,979 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8124,539,101 - 124,580,648 (+)Ensemblhg38GRCh38
GRCh378125,551,364 - 125,562,220 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368125,620,524 - 125,631,408 (+)NCBIBuild 36Build 36hg18NCBI36
Build 348125,620,535 - 125,631,399NCBI
Celera8121,739,460 - 121,750,342 (+)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8120,876,813 - 120,887,693 (+)NCBIHuRef
CHM1_18125,591,587 - 125,602,470 (+)NCBICHM1_1
T2T-CHM13v2.08125,672,139 - 125,682,993 (+)NCBIT2T-CHM13v2.0
Ndufb9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391558,805,650 - 58,811,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1558,805,605 - 58,811,337 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381558,933,801 - 58,939,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,933,756 - 58,939,488 (+)Ensemblmm10GRCm38
MGSCv371558,765,365 - 58,771,044 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361558,763,893 - 58,769,572 (+)NCBIMGSCv36mm8
Celera1560,463,602 - 60,469,281 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.09NCBI
Ndufb9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555403,198,145 - 3,203,470 (+)Ensembl
ChiLan1.0NW_0049555403,198,140 - 3,203,470 (+)NCBIChiLan1.0ChiLan1.0
NDUFB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27141,960,687 - 141,971,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18117,471,906 - 117,482,787 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08121,223,857 - 121,234,743 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18123,975,910 - 123,986,781 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8123,975,910 - 123,986,781 (+)EnsemblpanPan2panpan1.1
NDUFB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11322,624,929 - 22,632,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1322,624,945 - 22,632,310 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1322,590,387 - 22,597,760 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01322,966,848 - 22,974,209 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,966,746 - 22,979,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11322,687,671 - 22,695,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01322,797,216 - 22,804,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01323,040,099 - 23,047,497 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ndufb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530315,692,060 - 15,697,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,118,164 - 23,123,749 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647023,118,162 - 23,123,648 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,105,305 - 15,113,550 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1415,105,305 - 15,113,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,761,858 - 15,769,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18119,103,300 - 119,113,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8119,102,917 - 119,113,950 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603921,072,813 - 21,082,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473530,659,030 - 30,667,372 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473530,660,652 - 30,667,395 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ndufb9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11233,459,498 - 233,465,965 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ndufb9
46 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000012616
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78211124596700643Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78211124595485241Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011891   ⟹   ENSRNOP00000067352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl790,439,726 - 90,450,911 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000012616   ⟹   ENSRNOP00000012616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl790,481,001 - 90,488,009 (+)Ensembl
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101966   ⟹   ENSRNOP00000084114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000144333   ⟹   ENSRNOP00000107462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl792,370,467 - 92,379,955 (+)Ensembl
RefSeq Acc Id: NM_001127294   ⟹   NP_001120766
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8792,370,423 - 92,376,841 (+)NCBI
mRatBN7.2790,480,948 - 90,487,367 (+)NCBI
Rnor_6.0798,813,062 - 98,819,408 (+)NCBI
Rnor_5.0799,411,587 - 99,417,933 (+)NCBI
RGSC_v3.4795,949,322 - 95,955,668 (-)RGD
Celera787,246,352 - 87,252,698 (+)RGD
Sequence:
RefSeq Acc Id: XM_063263258   ⟹   XP_063119328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8792,370,440 - 92,376,841 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001120766 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119328 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66927 (Get FASTA)   NCBI Sequence Viewer  
  AAI68767 (Get FASTA)   NCBI Sequence Viewer  
  EDM16208 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000107462
  ENSRNOP00000107462.1
RefSeq Acc Id: NP_001120766   ⟸   NM_001127294
- UniProtKB: B2RYW3 (UniProtKB/TrEMBL),   B5DER0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012616   ⟸   ENSRNOT00000012616
Ensembl Acc Id: ENSRNOP00000084114   ⟸   ENSRNOT00000101966
Ensembl Acc Id: ENSRNOP00000067352   ⟸   ENSRNOT00000011891
RefSeq Acc Id: XP_063119328   ⟸   XM_063263258
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000107462   ⟸   ENSRNOT00000144333
Protein Domains
Complex 1 LYR protein

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYW3-F1-model_v2 AlphaFold B2RYW3 1-179 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695353
Promoter ID:EPDNEW_R5878
Type:multiple initiation site
Name:Ndufb9_1
Description:NADH:ubiquinone oxidoreductase subunit B9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0798,813,043 - 98,813,103EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307114 AgrOrtholog
BioCyc Gene G2FUF-33296 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
Ensembl Genes ENSRNOG00000008987 Ensembl
  ENSRNOG00000009364 Ensembl
  ENSRNOG00000085848 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000144333 ENTREZGENE
  ENSRNOT00000144333.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919700 IMAGE-MGC_LOAD
InterPro Complex1_LYR UniProtKB/TrEMBL
  Complex1_LYR_NDUFB9_LYRM3 UniProtKB/TrEMBL
  NDUFB9 UniProtKB/TrEMBL
KEGG Report rno:299954 UniProtKB/TrEMBL
MGC_CLONE MGC:188916 IMAGE-MGC_LOAD
NCBI Gene 299954 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 9 UniProtKB/TrEMBL
  PTHR12868 UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
PhenoGen Ndufb9 PhenoGen
RatGTEx ENSRNOG00000008987 RatGTEx
  ENSRNOG00000009364 RatGTEx
  ENSRNOG00000085848 RatGTEx
UniProt B2RYW3 ENTREZGENE, UniProtKB/TrEMBL
  B5DER0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-17 Ndufb9  NADH:ubiquinone oxidoreductase subunit B9  Ndufb9  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ndufb9  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9   Ndufb9_predicted  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ndufb9_predicted  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED