NDUFB9 (NADH:ubiquinone oxidoreductase subunit B9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: NDUFB9 (NADH:ubiquinone oxidoreductase subunit B9) Canis lupus familiaris
Analyze
Symbol: NDUFB9
Name: NADH:ubiquinone oxidoreductase subunit B9
RGD ID: 12070038
Description: INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (inferred); mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH nuclear type mitochondrial complex I deficiency 24 (ortholog); trichorhinophalangeal syndrome type I (ortholog); Weight Gain (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11322,624,929 - 22,632,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1322,624,945 - 22,632,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1322,590,387 - 22,597,760 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,966,848 - 22,974,209 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,966,746 - 22,979,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11322,687,671 - 22,695,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01322,797,216 - 22,804,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01323,040,099 - 23,047,497 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NDUFB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11322,624,929 - 22,632,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1322,624,945 - 22,632,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1322,590,387 - 22,597,760 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,966,848 - 22,974,209 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,966,746 - 22,979,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11322,687,671 - 22,695,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01322,797,216 - 22,804,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01323,040,099 - 23,047,497 (+)NCBIUU_Cfam_GSD_1.0
NDUFB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388124,539,123 - 124,549,979 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8124,539,101 - 124,580,648 (+)EnsemblGRCh38hg38GRCh38
GRCh378125,551,364 - 125,562,220 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368125,620,524 - 125,631,408 (+)NCBINCBI36Build 36hg18NCBI36
Build 348125,620,535 - 125,631,399NCBI
Celera8121,739,460 - 121,750,342 (+)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8120,876,813 - 120,887,693 (+)NCBIHuRef
CHM1_18125,591,587 - 125,602,470 (+)NCBICHM1_1
T2T-CHM13v2.08125,672,139 - 125,682,993 (+)NCBIT2T-CHM13v2.0
Ndufb9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391558,805,650 - 58,811,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1558,805,605 - 58,811,337 (+)EnsemblGRCm39 Ensembl
GRCm381558,933,801 - 58,939,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,933,756 - 58,939,488 (+)EnsemblGRCm38mm10GRCm38
MGSCv371558,765,365 - 58,771,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361558,763,893 - 58,769,572 (+)NCBIMGSCv36mm8
Celera1560,463,602 - 60,469,281 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.09NCBI
Ndufb9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,370,423 - 92,376,841 (+)NCBIGRCr8
mRatBN7.2790,480,948 - 90,487,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx792,370,572 - 92,376,991 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0794,571,728 - 94,578,147 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0794,398,995 - 94,405,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0798,813,062 - 98,819,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0799,411,587 - 99,417,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4795,949,322 - 95,955,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1795,983,544 - 95,989,916 (-)NCBI
Celera787,246,352 - 87,252,698 (+)NCBICelera
Cytogenetic Map7q33NCBI
Ndufb9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555403,198,145 - 3,203,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555403,198,140 - 3,203,470 (+)NCBIChiLan1.0ChiLan1.0
NDUFB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27141,960,687 - 141,971,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18117,471,906 - 117,482,787 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08121,223,857 - 121,234,743 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18123,975,910 - 123,986,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8123,975,910 - 123,986,781 (+)Ensemblpanpan1.1panPan2
Ndufb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530315,692,060 - 15,697,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,118,164 - 23,123,749 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647023,118,162 - 23,123,648 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,105,305 - 15,113,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,105,305 - 15,113,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,761,858 - 15,769,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18119,103,300 - 119,113,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8119,102,917 - 119,113,950 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603921,072,813 - 21,082,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473530,659,030 - 30,667,372 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473530,660,652 - 30,667,395 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFB9
138 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000001602   ⟹   ENSCAFP00000001474
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1322,624,950 - 22,632,310 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078751   ⟹   ENSCAFP00000051977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1322,624,945 - 22,628,867 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845020830   ⟹   ENSCAFP00845016352
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1322,966,746 - 22,979,490 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845020863   ⟹   ENSCAFP00845016383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1322,966,867 - 22,970,791 (+)Ensembl
RefSeq Acc Id: XM_005627925   ⟹   XP_005627982
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11322,624,929 - 22,632,310 (+)NCBI
Dog10K_Boxer_Tasha1322,590,387 - 22,597,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022426691   ⟹   XP_022282399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11322,624,949 - 22,632,286 (+)NCBI
Dog10K_Boxer_Tasha1322,590,409 - 22,597,750 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038493209   ⟹   XP_038349137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11322,687,671 - 22,695,059 (+)NCBI
RefSeq Acc Id: XM_038493210   ⟹   XP_038349138
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11322,687,693 - 22,695,049 (+)NCBI
RefSeq Acc Id: XM_038555478   ⟹   XP_038411406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01323,040,099 - 23,047,497 (+)NCBI
RefSeq Acc Id: XM_038555479   ⟹   XP_038411407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01323,040,121 - 23,047,487 (+)NCBI
RefSeq Acc Id: XM_038619393   ⟹   XP_038475321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01322,797,216 - 22,804,609 (+)NCBI
RefSeq Acc Id: XM_038619394   ⟹   XP_038475322
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01322,797,239 - 22,804,599 (+)NCBI
RefSeq Acc Id: XM_038684984   ⟹   XP_038540912
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01322,966,848 - 22,974,209 (+)NCBI
RefSeq Acc Id: XM_038684985   ⟹   XP_038540913
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01322,966,870 - 22,974,199 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005627982   ⟸   XM_005627925
- Peptide Label: isoform X1
- UniProtKB: A0A8P0N496 (UniProtKB/TrEMBL),   A0A8C0MSJ4 (UniProtKB/TrEMBL),   A0A8I3NJQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022282399   ⟸   XM_022426691
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000051977   ⟸   ENSCAFT00000078751
RefSeq Acc Id: ENSCAFP00000001474   ⟸   ENSCAFT00000001602
RefSeq Acc Id: XP_038349137   ⟸   XM_038493209
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038349138   ⟸   XM_038493210
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038475321   ⟸   XM_038619393
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038475322   ⟸   XM_038619394
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038540912   ⟸   XM_038684984
- Peptide Label: isoform X1
- UniProtKB: A0A8P0N496 (UniProtKB/TrEMBL),   A0A8C0MSJ4 (UniProtKB/TrEMBL),   A0A8I3NJQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038540913   ⟸   XM_038684985
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038411406   ⟸   XM_038555478
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MSJ4 (UniProtKB/TrEMBL),   A0A8I3NJQ2 (UniProtKB/TrEMBL),   A0A8P0N496 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038411407   ⟸   XM_038555479
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845016383   ⟸   ENSCAFT00845020863
RefSeq Acc Id: ENSCAFP00845016352   ⟸   ENSCAFT00845020830
Protein Domains
Complex 1 LYR protein

Promoters
RGD ID:13685604
Promoter ID:EPDNEW_C3672
Type:initiation region
Name:NDUFB9_1
Description:NADH:ubiquinone oxidoreductase subunit B9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11322,624,950 - 22,625,010EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001045 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008586 UniProtKB/TrEMBL
  ENSCAFG00845011733 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001602.5 UniProtKB/TrEMBL
  ENSCAFT00000078751.2 UniProtKB/TrEMBL
  ENSCAFT00030015869.1 UniProtKB/TrEMBL
  ENSCAFT00845020830.1 UniProtKB/TrEMBL
  ENSCAFT00845020863.1 UniProtKB/TrEMBL
InterPro Complex1_LYR_dom UniProtKB/TrEMBL
  Complex1_LYR_NDUFB9_LYRM3 UniProtKB/TrEMBL
  NDUFB9 UniProtKB/TrEMBL
KEGG Report cfa:475094 UniProtKB/TrEMBL
NCBI Gene NDUFB9 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 9 UniProtKB/TrEMBL
  PTHR12868 UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
UniProt A0A8C0MSJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NIW9_CANLF UniProtKB/TrEMBL
  A0A8I3NJQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N496 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43706 ENTREZGENE