Zfand3 (zinc finger AN1-type containing 3)

Gene: Zfand3 (zinc finger AN1-type containing 3) Rattus norvegicus

Analyze

Symbol:

Zfand3

Name:

zinc finger AN1-type containing 3

RGD ID:

1307113

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND3 (zinc finger AN1-type containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

AN1-type zinc finger protein 3; LOC361816; testis expressed gene 27; testis-expressed protein 27; testis-expressed sequence 27; Tex27; zinc finger, AN1-type domain 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	8,084,898 - 8,281,093 (+)	NCBI		GRCr8
mRatBN7.2	20	8,083,407 - 8,279,617 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	8,082,200 - 8,279,616 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	8,777,912 - 8,972,997 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	8,139,086 - 8,334,154 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	8,613,320 - 8,808,646 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	8,693,989 - 8,892,572 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	8,696,436 - 8,892,569 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	10,942,042 - 11,081,447 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	8,383,832 - 8,523,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	8,384,058 - 8,523,822 (+)	NCBI
Celera	20	9,670,691 - 9,809,996 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

juvenile rheumatoid arthritis (ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP,ISO)

doxorubicin (EXP)

ethanol (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

lead(0) (ISO)

leflunomide (EXP,ISO)

mercury atom (ISO)

mercury(0) (ISO)

ozone (ISO)

paracetamol (ISO)

sodium arsenate (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

theophylline (ISO)

triphenylstannane (ISO)

troglitazone (ISO)

tunicamycin (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

DNA binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Zfand3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	8,084,898 - 8,281,093 (+)	NCBI		GRCr8
mRatBN7.2	20	8,083,407 - 8,279,617 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	8,082,200 - 8,279,616 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	8,777,912 - 8,972,997 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	8,139,086 - 8,334,154 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	8,613,320 - 8,808,646 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	8,693,989 - 8,892,572 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	8,696,436 - 8,892,569 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	10,942,042 - 11,081,447 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	8,383,832 - 8,523,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	8,384,058 - 8,523,822 (+)	NCBI
Celera	20	9,670,691 - 9,809,996 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

ZFAND3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	37,819,727 - 38,154,624 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	37,819,727 - 38,154,624 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	37,787,503 - 38,122,400 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	37,895,611 - 38,230,375 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	37,895,610 - 38,230,375	NCBI
Celera	6	39,342,340 - 39,675,929 (+)	NCBI		Celera
Cytogenetic Map	6	p21.2	NCBI
HuRef	6	37,507,083 - 37,840,908 (+)	NCBI		HuRef
CHM1_1	6	37,789,210 - 38,124,343 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	37,644,497 - 37,979,293 (+)	NCBI		T2T-CHM13v2.0

Zfand3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	30,224,013 - 30,429,797 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	30,223,707 - 30,429,802 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	30,005,039 - 30,210,823 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	30,004,733 - 30,210,828 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	30,142,032 - 30,346,965 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	29,732,099 - 29,937,032 (+)	NCBI		MGSCv36	mm8
Celera	17	30,505,153 - 30,744,363 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	15.59	NCBI

Zfand3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	5,157,309 - 5,356,290 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	5,158,936 - 5,356,243 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZFAND3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	52,290,249 - 52,626,657 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	48,160,319 - 48,496,477 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	37,383,659 - 37,743,202 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	38,683,965 - 38,909,049 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	38,683,961 - 38,906,806 (+)	Ensembl	panpan1.1		panPan2

ZFAND3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	6,819,403 - 7,140,144 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	6,820,354 - 7,139,722 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	6,835,819 - 7,156,401 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	7,283,659 - 7,604,757 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	7,284,713 - 7,604,738 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	6,819,355 - 7,143,485 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	6,902,112 - 7,221,556 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	7,001,337 - 7,326,240 (+)	NCBI		UU_Cfam_GSD_1.0

Zfand3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	42,369,191 - 42,594,915 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	21,365,190 - 21,591,090 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	21,365,287 - 21,591,031 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFAND3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	33,378,286 - 33,718,030 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	33,378,229 - 33,718,034 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	38,858,439 - 38,940,839 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFAND3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	33,987,544 - 34,319,671 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	33,987,449 - 34,319,621 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	37,779,066 - 38,112,531 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfand3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	20,026,682 - 20,340,684 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	20,024,580 - 20,340,758 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfand3
1230 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	264
Count of miRNA genes:	171
Interacting mature miRNAs:	209
Transcripts:	ENSRNOT00000045636
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3621649	9243559	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8042410	17617956	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat

Markers in Region

AW539211

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	8,279,203 - 8,279,295 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	8,892,157 - 8,892,248	NCBI	Rnor6.0
Rnor_5.0	20	11,081,034 - 11,081,125	UniSTS	Rnor5.0
RGSC_v3.4	20	8,523,183 - 8,523,274	UniSTS	RGSC3.4
Celera	20	9,809,583 - 9,809,674	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000085131 ⟹ ENSRNOP00000069304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	8,083,407 - 8,279,616 (+)	Ensembl
Rnor_6.0 Ensembl	20	8,696,436 - 8,892,569 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102831 ⟹ ENSRNOP00000097588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	8,082,200 - 8,279,612 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118523 ⟹ ENSRNOP00000088399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	8,083,407 - 8,279,616 (+)	Ensembl

RefSeq Acc Id:

NM_001012175 ⟹ NP_001012175

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	8,084,898 - 8,281,093 (+)	NCBI
mRatBN7.2	20	8,083,407 - 8,279,617 (+)	NCBI
Rnor_6.0	20	8,696,436 - 8,892,570 (+)	NCBI
Rnor_5.0	20	10,942,042 - 11,081,447 (+)	NCBI
RGSC_v3.4	20	8,383,832 - 8,523,596 (+)	RGD
Celera	20	9,670,691 - 9,809,996 (+)	RGD

Sequence:

show sequence

CCCGCCCCGCGCCCCCCGCCGCTGCCGCCGCCGCCTCCGCTTCCTCCGAGGGGGGCCCAGGCCC
AGCCGCCGCCGCCGCCGCCGCCGTCGCCTCCGAGCTCCGCCGCCGCCGCCGAGCACCATGGGAG
ACGCCGGGAGCGAGCGTAGCAAAGCGCCCAGCCTGCCGCCTCGCTGTCCCTGCGGCTTCTGGGG
GTCCAGCAAGACTATGAATCTCTGTTCCAAATGCTTTGCTGATTTTCAAAAGAAACAACCAGAT
GATGATTCCACCCCAAGTACAAGTAACAGCCAATCAGATTTGTTTTCTGAAGAGACCACCAGTG
ACAACAACAATACCTCCGTAACCACGCCAACTCTTAGTCCCAGCCAGCAGTCGCTCCCGACAGA
ACTGAATGTAACTTCACCGAGTGAAGAGGAATGTGGGCCATGCACAGACACAGCTCATGTCTCG
TTAATCACACCAACCAAAAGATCCTGTGGTGCAGATTCACAGTCCGAGAGCGAGGCTTCACCCG
TGAAACGACCGCGACTCGTAGAGAACCCCGAGCGGCCTGAGGAGAGCGGCCGGTCGAAGCAGAA
GAGCCGGCGCCGGTGCTTTCAGTGCCAGACGAAGCTGGAGCTGGTGCAGCAGGAACTGGGCTCC
TGTCGCTGTGGGTACGTGTTCTGCATGTTACATCGCCTCCCAGAGCAGCACGACTGTACGTTCG
ACCACATGGGCCGTGGCCGCGAGGAAGCCATCATGAAAATGGTGAAACTGGACCGGAAAGTGGG
GCGCTCCTGCCAGCGCATCGGGGAGGGGTGCTCCTGAAGGCCAGGCACGGCCACCACACGACGC
TGTTCTTAGTTCACTAATGTTAGCCTTATTTAGGACAAAGTCAGCCAGACACCTTGTACTGGGC
ACGCGTCAGACTACAGCCAGCCGTCTTCTTTCTTTAGCCAGCCATCCTGGTACTGTAGTTTAGG
GGTTGATGGTGGATGAAATTGATGTCTGGCTGGTTACTAAGGTGCCTGCTAGCCATTGTATAAA
ATTAAAACATGAAGACTATTTGTTTTGAGCATGGCTAGTGGATTCACAACAACACATGCCTGTC
ACTGCTGGAGTCGCACTTACAAAGCCTTAAGCGGAAAGTGTCCAGAGCAGACCGAGGCAGCAGG
GCAGGTGCAGGCCGCGCCGCCCACGCGGGCGGCTTTGACAGAAACTCTTCCATGTTCGGCCTTT
CACCTCTTCACTTTCGCTTGGTCCCAGCAGGACCTGATGGCCACGCGTGCCTTGGCCACAGGAA
GCTGCTGAGACTGACCACGTGGCCGGGCTGGGCTGGGCCCTCACTCTCCCTCAGCTGGAAGTCA
GGGTGGGGACAGATTCTATGGAGGAAGCTTTTGAACCTGTTGTTACGGGGAAACTCATCACACA
AGGAGAGAGACAACTCCACTTTGAAAATTAGCTCCCCTCAAGCCTAGTCCATGCACGGTCTCCA
CCTTTTCTGCACAGGATCCGTGGTTGTGACCCGGCTCTGGCTGTCGCTTGCTGAGAGCATTGGT
GTTGCTCCTGGCAGGCCTGAGGCGTCAACCAGATGTCCATGGCCACGAGAGTCAGTGAGCGCAC
AGGGGATCTGCTGCTGCCCTTCCTGGCAGGAGTCTCCTCTTGTTTCTATGCAGCCATAGTTTGA
GGACAACCAGGCCAACAACCTCAGGACAAGTTCAGGAAGGAAAGACAGTGGACTGCATGGGACC
CTGGTGTGGCTCTAGAACGTTGAGAGTGGTGGCTGTGGGTGGGAGGCAGCTCTCAGCTTGGGTC
TGAACGGGGCTGGTTAGAAACCACTCAGGGGGCGGGGCGGGGCGATTCTGGGAGTCTCTGGAAA
GCCTTGGTCAGGTTTAAGTGCCACACCTTGCGTGCATCTGTCCCAGATCGTGGCTTGGCCGGAG
CTGTCCATGTCTGACTGCTGAGTGGTTTAGCCCAGTGACTTTCCCTTGTGTAGGTGAGCAAGGT
CTGCTTCCCAGATGAACAGATCTGCAAGTATAATGTCGTGATCCAAGATAGCGAATAGGAAATC
ATGTTCTTCCCACCCTGCACCCAGTCTGCACCCCAGCAGAGGGGACCCAGTGCAGAAGCTCCAG
CCTTAATTCTTGCTTCAGGACCCAGACCAGCCCCTCACTCGAGGGCAACCCAGGGTACGGTGCA
GGTCTGCCTAGCGTTTACCACTGCTGTTAAGCCACAGCTCTCTGGCCCCACATGGCCGTCCTCG
GTGAGGCGCCGTGTACCCTTCTTAGGCCCTCAGGTCCCCAGAGCACTAGGAGGGGGTGCTGGGG
ACCATGTGCCCAGGGACCGCAGCCAGGTTCACGCCTGCTGGGGGAGCTGGGCAGGGGAGGAAGG
GCTTGTTCCCTACAGTATCTGTTCTGTGAAGTTTGTTAAATGTAAGGGAAGCTGAAATTCTTGT
ATCTTAAAGAGGAAATCTTATTTAACCCTTTGTGTCCTAGATTGACTTACACACATAGCCTAGA
GCTCAGTTTTAGTTTAACATTGTGGAAATATTAAAAGAATCTTGTAACTTTATTCTTTTTTTTC
TCCTGCTGAAACAAATTAAACCAATCGTATGGAAAAAAAAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001012175	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85956	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069304
	ENSRNOP00000069304.2
	ENSRNOP00000088399.1
	ENSRNOP00000097588.1
	ENSRNOP00055009621
	ENSRNOP00060005979
	ENSRNOP00065043628
GenBank Protein	Q5U2M7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012175 ⟸ NM_001012175

- UniProtKB:

Q5U2M7 (UniProtKB/Swiss-Prot), A0A0G2JV07 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEET
TSDNNNTSVTTPTLSPSQQSLPTELNVTSPSEEECGPCTDTAHVSLITPTKRSCGADSQSESEA
SPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDC
TFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS

hide sequence

RefSeq Acc Id:

ENSRNOP00000069304 ⟸ ENSRNOT00000085131

RefSeq Acc Id:

ENSRNOP00000097588 ⟸ ENSRNOT00000102831

RefSeq Acc Id:

ENSRNOP00000088399 ⟸ ENSRNOT00000118523

Protein Domains

A20-type AN1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2M7-F1-model_v2	AlphaFold	Q5U2M7	1-227	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701466

Promoter ID:

EPDNEW_R11990

Type:

initiation region

Name:

Zfand3_1

Description:

zinc finger AN1-type containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	8,696,390 - 8,696,450	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307113	AgrOrtholog
BioCyc Gene	G2FUF-4351	BioCyc
Ensembl Genes	ENSRNOG00000059659	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055007279	UniProtKB/Swiss-Prot
	ENSRNOG00060004794	UniProtKB/Swiss-Prot
	ENSRNOG00065030818	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000085131	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000085131.2	UniProtKB/Swiss-Prot
	ENSRNOT00000102831.1	UniProtKB/TrEMBL
	ENSRNOT00000118523.1	UniProtKB/TrEMBL
	ENSRNOT00055012123	UniProtKB/Swiss-Prot
	ENSRNOT00060007989	UniProtKB/Swiss-Prot
	ENSRNOT00065053116	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.5.4770	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	4.10.1110.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134959	IMAGE-MGC_LOAD
InterPro	AN1-like_Znf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_A20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_AN1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361816	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95308	IMAGE-MGC_LOAD
NCBI Gene	361816	ENTREZGENE
PANTHER	AN1-TYPE ZINC FINGER PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AN1-TYPE ZINC FINGER PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	zf-A20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-AN1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zfand3	PhenoGen
PROSITE	ZF_A20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_AN1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000059659	RatGTEx
	ENSRNOG00055007279	RatGTEx
	ENSRNOG00060004794	RatGTEx
	ENSRNOG00065030818	RatGTEx
SMART	ZnF_A20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_AN1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF118310	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JV07	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A6F9_RAT	UniProtKB/TrEMBL
	A0A8I6ARI3_RAT	UniProtKB/TrEMBL
	Q5U2M7	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Zfand3	zinc finger AN1-type containing 3	Zfand3	zinc finger, AN1-type domain 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Zfand3	zinc finger, AN1-type domain 3	Tex27	testis expressed gene 27	Symbol and Name updated	1299863	APPROVED
2005-12-06	Tex27	testis expressed gene 27	Tex27_predicted	testis expressed gene 27 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Tex27_predicted	testis expressed gene 27 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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