Chst2 (carbohydrate sulfotransferase 2) - Rat Genome Database

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Gene: Chst2 (carbohydrate sulfotransferase 2) Rattus norvegicus
Analyze
Symbol: Chst2
Name: carbohydrate sulfotransferase 2
RGD ID: 1306988
Description: Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process; positive regulation of leukocyte tethering or rolling; and sulfur compound metabolic process. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network. Orthologous to human CHST2 (carbohydrate sulfotransferase 2); PARTICIPATES IN keratan sulfate biosynthetic pathway; INTERACTS WITH 6-propyl-2-thiouracil; alpha-Zearalanol; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2; LOC367145
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88104,839,716 - 104,845,961 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8104,831,292 - 104,860,301 (-)EnsemblGRCr8
mRatBN7.2895,960,067 - 95,966,312 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl895,959,826 - 95,966,955 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8101,631,794 - 101,638,045 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0899,831,037 - 99,837,288 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0897,669,982 - 97,676,233 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08103,186,759 - 103,190,612 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,188,651 - 103,190,243 (-)Ensemblrn6Rnor6.0
Rnor_5.08102,646,453 - 102,650,752 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48100,497,213 - 100,498,704 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera895,411,023 - 95,415,742 (-)NCBICelera
RGSC_v3.18100,516,681 - 100,518,165 (-)NCBI
Cytogenetic Map8q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
camptothecin  (ISO)
carbamazepine  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (EXP)
dexamethasone  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
lipopolysaccharide  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9712885   PMID:9722682   PMID:11042394   PMID:12855678  


Genomics

Comparative Map Data
Chst2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88104,839,716 - 104,845,961 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8104,831,292 - 104,860,301 (-)EnsemblGRCr8
mRatBN7.2895,960,067 - 95,966,312 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl895,959,826 - 95,966,955 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8101,631,794 - 101,638,045 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0899,831,037 - 99,837,288 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0897,669,982 - 97,676,233 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08103,186,759 - 103,190,612 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,188,651 - 103,190,243 (-)Ensemblrn6Rnor6.0
Rnor_5.08102,646,453 - 102,650,752 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48100,497,213 - 100,498,704 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera895,411,023 - 95,415,742 (-)NCBICelera
RGSC_v3.18100,516,681 - 100,518,165 (-)NCBI
Cytogenetic Map8q31NCBI
CHST2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383143,119,771 - 143,124,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3143,119,771 - 143,124,014 (+)Ensemblhg38GRCh38
GRCh373142,838,613 - 142,842,856 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363144,321,358 - 144,324,502 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343144,322,006 - 144,324,496NCBI
Celera3141,262,068 - 141,265,212 (+)NCBICelera
Cytogenetic Map3q24NCBI
HuRef3140,210,883 - 140,215,121 (+)NCBIHuRef
CHM1_13142,801,465 - 142,805,703 (+)NCBICHM1_1
T2T-CHM13v2.03145,867,169 - 145,871,412 (+)NCBIT2T-CHM13v2.0
Chst2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,282,979 - 95,289,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl995,281,345 - 95,288,775 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38995,400,926 - 95,407,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,399,292 - 95,406,722 (-)Ensemblmm10GRCm38
MGSCv37995,301,345 - 95,307,689 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36995,213,853 - 95,216,074 (-)NCBIMGSCv36mm8
Celera994,964,957 - 94,971,316 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.11NCBI
Chst2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555082,823,399 - 2,824,925 (-)Ensembl
ChiLan1.0NW_0049555082,821,724 - 2,824,926 (-)NCBIChiLan1.0ChiLan1.0
CHST2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,027,310 - 141,030,527 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13141,032,042 - 141,035,258 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03140,149,509 - 140,153,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13147,740,544 - 147,743,914 (+)NCBIPanPan1.1PanPan1.1panPan2
CHST2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12338,695,627 - 38,701,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2338,621,314 - 38,625,198 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02339,227,491 - 39,231,375 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2339,227,491 - 39,229,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12338,910,900 - 38,914,781 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02338,991,867 - 38,995,743 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02339,230,215 - 39,234,094 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chst2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560277,952,667 - 77,956,564 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365404,692,517 - 4,694,109 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365404,692,450 - 4,696,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,820,112 - 83,821,909 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11383,818,652 - 83,822,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21391,593,448 - 91,596,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11547,511,401 - 47,515,040 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1547,511,972 - 47,513,564 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604120,444,268 - 20,447,912 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473019,751,731 - 19,753,317 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473019,750,770 - 19,754,366 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Chst2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1886,865,821 - 86,872,170 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Chst2
121 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:66
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000075305
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH131963  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88104,841,872 - 104,842,050 (+)Marker Load Pipeline
mRatBN7.2895,962,223 - 95,962,401 (+)MAPPERmRatBN7.2
Rnor_6.08103,187,083 - 103,187,260NCBIRnor6.0
Rnor_5.08102,647,314 - 102,647,491UniSTSRnor5.0
RGSC_v3.48100,496,608 - 100,496,785UniSTSRGSC3.4
Celera895,412,313 - 95,412,490UniSTS
RH 3.4 Map81055.4UniSTS
Cytogenetic Map8q31UniSTS
RH143193  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2895,951,968 - 95,952,192 (+)MAPPERmRatBN7.2
Rnor_6.08103,177,065 - 103,177,288NCBIRnor6.0
Rnor_5.08102,637,461 - 102,637,684UniSTSRnor5.0
RGSC_v3.48100,487,165 - 100,487,388UniSTSRGSC3.4
Celera895,402,647 - 95,402,870UniSTS
RH 3.4 Map81052.0UniSTS
Cytogenetic Map8q31UniSTS
RH139309  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88104,831,525 - 104,831,707 (+)Marker Load Pipeline
mRatBN7.2895,951,876 - 95,952,058 (+)MAPPERmRatBN7.2
Rnor_6.08103,176,973 - 103,177,154NCBIRnor6.0
Rnor_5.08102,637,369 - 102,637,550UniSTSRnor5.0
RGSC_v3.48100,487,073 - 100,487,254UniSTSRGSC3.4
Celera895,402,554 - 95,402,736UniSTS
Cytogenetic Map8q31UniSTS
Chst2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2895,964,206 - 95,964,574 (+)MAPPERmRatBN7.2
Rnor_6.08103,189,066 - 103,189,433NCBIRnor6.0
Rnor_5.08102,649,297 - 102,649,664UniSTSRnor5.0
Celera895,414,296 - 95,414,663UniSTS
Cytogenetic Map8q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000075305   ⟹   ENSRNOP00000065660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8104,838,552 - 104,848,054 (-)Ensembl
mRatBN7.2 Ensembl895,960,078 - 95,966,515 (-)Ensembl
Rnor_6.0 Ensembl8103,188,651 - 103,190,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098664   ⟹   ENSRNOP00000087574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8104,839,440 - 104,860,301 (-)Ensembl
mRatBN7.2 Ensembl895,959,826 - 95,966,955 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000131813   ⟹   ENSRNOP00000108248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8104,839,477 - 104,847,603 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163909   ⟹   ENSRNOP00000103051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8104,831,292 - 104,848,054 (-)Ensembl
RefSeq Acc Id: NM_001398894   ⟹   NP_001385823
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88104,839,716 - 104,845,961 (-)NCBI
mRatBN7.2895,960,067 - 95,966,312 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385823 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065660.1
  ENSRNOP00000087574
  ENSRNOP00000087574.1
  ENSRNOP00000103051.1
  ENSRNOP00000108248.1
Ensembl Acc Id: ENSRNOP00000065660   ⟸   ENSRNOT00000075305
Ensembl Acc Id: ENSRNOP00000087574   ⟸   ENSRNOT00000098664
RefSeq Acc Id: NP_001385823   ⟸   NM_001398894
- UniProtKB: M0R868 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108248   ⟸   ENSRNOT00000131813
Ensembl Acc Id: ENSRNOP00000103051   ⟸   ENSRNOT00000163909
Protein Domains
Sulfotransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R868-F1-model_v2 AlphaFold M0R868 1-530 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306988 AgrOrtholog
BioCyc Gene G2FUF-29487 BioCyc
BioCyc Pathway PWY-7831 [ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide] BioCyc
BioCyc Pathway Image PWY-7831 BioCyc
Ensembl Genes ENSRNOG00000047734 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075305.3 UniProtKB/TrEMBL
  ENSRNOT00000098664 ENTREZGENE
  ENSRNOT00000098664.2 UniProtKB/TrEMBL
  ENSRNOT00000131813.1 UniProtKB/TrEMBL
  ENSRNOT00000163909.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  Gal/GlcNAc/GalNAc_ST UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene 367145 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE UniProtKB/TrEMBL
  CARBOHYDRATE SULFOTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PhenoGen Chst2 PhenoGen
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047734 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt M0R868 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Chst2  carbohydrate sulfotransferase 2  Chst2  carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-16 Chst2  carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2  Chst2  carbohydrate sulfotransferase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Chst2  carbohydrate sulfotransferase 2   Chst2_predicted  carbohydrate sulfotransferase 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chst2_predicted  carbohydrate sulfotransferase 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED