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Gene: Susd1 (sushi domain containing 1) Rattus norvegicus

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Symbol:

Susd1

Name:

sushi domain containing 1

RGD ID:

1306966

Description:

Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Orthologous to human SUSD1 (sushi domain containing 1); INTERACTS WITH 17beta-estradiol; acrylamide; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC298031; sushi domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SUSD1 (sushi domain containing 1)	HGNC	Ensembl, HomoloGene, NCBI
Mus musculus (house mouse):	Susd1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Susd1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SUSD1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SUSD1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Susd1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SUSD1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SUSD1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Susd1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Susd1 (sushi domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SUSD1 (sushi domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Susd1 (sushi domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	susd1 (sushi domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rfk	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	susd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	susd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	78,952,781 - 79,076,121 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	78,952,781 - 79,070,781 (-)	Ensembl				GRCr8
mRatBN7.2	5	74,157,653 - 74,281,171 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	74,157,773 - 74,276,291 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	76,514,780 - 76,636,486 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	76,416,739 - 76,632,462 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	80,652,549 - 80,774,351 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	77,390,911 - 77,482,412 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	72,977,842 - 73,098,844 (-)	NCBI		Celera
RGSC_v3.1	5	77,395,737 - 77,504,530 (-)	NCBI
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

atrazine (EXP,ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

chlordecone (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

GSK-J4 (ISO)

indole-3-methanol (EXP)

menadione (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

nitrates (ISO)

okadaic acid (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

temozolomide (ISO)

testosterone (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

calcium ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15057822

Genomics

Comparative Map Data

Susd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	78,952,781 - 79,076,121 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	78,952,781 - 79,070,781 (-)	Ensembl				GRCr8
mRatBN7.2	5	74,157,653 - 74,281,171 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	74,157,773 - 74,276,291 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	76,514,780 - 76,636,486 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	76,416,739 - 76,632,462 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	80,652,549 - 80,774,351 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	77,390,911 - 77,482,412 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	72,977,842 - 73,098,844 (-)	NCBI		Celera
RGSC_v3.1	5	77,395,737 - 77,504,530 (-)	NCBI
Cytogenetic Map	5	q24	NCBI

SUSD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	112,040,783 - 112,175,297 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	112,040,777 - 112,175,486 (-)	Ensembl			hg38	GRCh38
GRCh37	9	114,803,063 - 114,937,577 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	113,842,882 - 113,977,377 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	111,882,616 - 112,017,111	NCBI
Celera	9	85,302,059 - 85,436,554 (-)	NCBI		Celera
Cytogenetic Map	9	q31.3-q32	NCBI
HuRef	9	84,401,174 - 84,536,088 (-)	NCBI		HuRef
CHM1_1	9	114,949,460 - 115,083,983 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	124,212,182 - 124,346,454 (-)	NCBI		T2T-CHM13v2.0

Susd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	59,314,190 - 59,438,738 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	59,314,683 - 59,438,633 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	59,314,202 - 59,439,869 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	59,314,683 - 59,438,633 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	59,327,555 - 59,451,505 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	59,423,264 - 59,532,681 (-)	NCBI		MGSCv36	mm8
Celera	4	59,231,835 - 59,355,798 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	32.5	NCBI

Susd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	15,144,573 - 15,282,962 (+)	Ensembl
ChiLan1.0	NW_004955419	15,153,722 - 15,287,373 (+)	NCBI	ChiLan1.0	ChiLan1.0

SUSD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	27,256,423 - 27,406,734 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	27,259,224 - 27,394,194 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	83,170,775 - 83,305,894 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	111,327,684 - 111,445,038 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	111,327,686 - 111,445,044 (-)	Ensembl			panPan2	panpan1.1

SUSD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	66,566,392 - 66,699,262 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	66,491,791 - 66,699,467 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	64,980,687 - 65,107,497 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	67,705,654 - 67,832,827 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	67,656,739 - 67,832,839 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	66,220,502 - 66,347,159 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	66,243,789 - 66,371,033 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	66,984,906 - 67,115,079 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Susd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	181,919,818 - 182,056,226 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	1,241,656 - 1,344,048 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	1,210,323 - 1,344,455 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SUSD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	252,781,491 - 252,956,179 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	252,819,956 - 252,956,513 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	283,608,946 - 283,742,634 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SUSD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	27,355,791 - 27,470,743 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666035	15,310,181 - 15,446,670 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Susd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	22,812,917 - 22,929,109 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	22,799,124 - 22,933,831 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Susd1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	92,006,670 - 92,121,017 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Susd1
457 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	73779642	118779642	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	73779642	103472210	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	65089051	103648916	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
7394708	Emca11	Estrogen-induced mammary cancer QTL 11			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	73176602	118176602	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	69474415	114474415	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	64589016	109589016	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	69835120	114835120	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	64589016	93503770	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	73779642	118779642	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	64589016	91762830	Rat

Markers in Region

D5Mgh11

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	79,046,321 - 79,046,465 (+)	Marker Load Pipeline
mRatBN7.2	5	74,251,320 - 74,251,464 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	76,608,035 - 76,608,178	NCBI	Rnor6.0
Rnor_5.0	5	80,745,804 - 80,745,947	UniSTS	Rnor5.0
RGSC_v3.4	5	77,484,155 - 77,484,299	RGD	RGSC3.4
RGSC_v3.4	5	77,484,156 - 77,484,299	UniSTS	RGSC3.4
Celera	5	73,070,369 - 73,070,512	UniSTS
RGSC_v3.1	5	77,489,268 - 77,489,412	RGD
RH 3.4 Map	5	524.8	UniSTS
RH 3.4 Map	5	524.8	RGD
RH 2.0 Map	5	399.0	RGD
SHRSP x BN Map	5	44.5699	RGD
Cytogenetic Map	5	q24	UniSTS

BF408469

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	74,157,923 - 74,158,047 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	76,515,114 - 76,515,237	NCBI	Rnor6.0
Rnor_5.0	5	80,652,883 - 80,653,006	UniSTS	Rnor5.0
RGSC_v3.4	5	77,390,762 - 77,390,885	UniSTS	RGSC3.4
Celera	5	72,978,176 - 72,978,299	UniSTS
RH 3.4 Map	5	520.0	UniSTS
Cytogenetic Map	5	q24	UniSTS

AI230851

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	74,163,749 - 74,163,951 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	76,520,940 - 76,521,141	NCBI	Rnor6.0
Rnor_5.0	5	80,658,709 - 80,658,910	UniSTS	Rnor5.0
RGSC_v3.4	5	77,396,588 - 77,396,789	UniSTS	RGSC3.4
Celera	5	72,984,006 - 72,984,207	UniSTS
RH 3.4 Map	5	519.9	UniSTS
Cytogenetic Map	5	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	355	192	11	144	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07048397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01037091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085109 ⟹ ENSRNOP00000068702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	78,952,781 - 79,070,781 (-)	Ensembl
mRatBN7.2 Ensembl	5	74,157,773 - 74,276,291 (-)	Ensembl
Rnor_6.0 Ensembl	5	76,416,739 - 76,632,462 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173331 ⟹ ENSRNOP00000105553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	78,952,781 - 79,070,781 (-)	Ensembl

RefSeq Acc Id:

NM_001427255 ⟹ NP_001414184

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,781 - 79,070,781 (-)	NCBI

RefSeq Acc Id:

XM_006238211 ⟹ XP_006238273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,792 - 79,073,457 (-)	NCBI
mRatBN7.2	5	74,157,653 - 74,277,397 (-)	NCBI
Rnor_6.0	5	76,514,780 - 76,634,046 (-)	NCBI
Rnor_5.0	5	80,652,549 - 80,774,351 (-)	NCBI

Sequence:

show sequence

AGTTCAGGCTGTCCTGGAACTTGCTGTGGGTAGACCAAGGTGCTTGGAATTCACCTCCTTCTGC
TTCTGCCTCCTGACTGCTGGGATTAAAGGCATGCACCTACATGTGTGGGCTCTCAGGATTTCTT
TCTACCCAGGTAAAGGTAAAGGACCCCAGACAGTTCCGATTGATAATGCTGTCGTCGGGGTTAC
TCTTATAAAGCCACAAGTAACCCAAATAACAACCAGGACGTTCATAAAAGTACACTTTCGAATT
GGATATCTACCCCATGCTGTGCTAAAAAGACACCTAGTAATTTCCCTTCCCAATTACAAGCTTT
GGATAATTTTTTTTTCTGGCATCACCTGTGTGTGTGTGTGTGTTTTAAAGTATACATACATATT
TATTTCGCAGAAGGGCATGGGGAGTGGAAGTTAAAGTTGTTTTAAAAATCTCTTGAATGGTGGA
TTTGTGGAAATAATGACCTGTGAGAGTTCATGGAGAGCTGGTTTTACCAAAAGTTGTCCAAACA
CCCAGAGACATGTTTACACTCACTTGATCCATCTCTCATTTCCCAAAGCAGGCTTCTCTCTTTG
TTGGACAAAAATAATCTTCAAGAAAGCTAGATACAAGAAACTAGGAAGTTTATTTTTAACGGCT
TTTTCCTAAGGCAGCCCAAGTTCAGCCCTTATATGGGTGTATTTGCCTATAGTTGAGGTAGGGT
TAGTTTACTGGTGAGGAAGCAAGTAAGAGTACCTGCCGAGTGGGGAGGCCCCCTGCACTTGGAC
AGCCCCCTCTCCCCCAAACGGATCTCACTTCTTCAGCCTCCCTCAACCCCAATTTCCAACTCCT
GTGTTAACTCTCTGCCTCCCAGCCTCCCACTCCAGTCCACCCAAAGCATAGATCTAAGCGACAT
TCCCAGTTTCTCCTTAATTTAATATTTTCCTCTCTCCAACAGTGCACTAATCTTAAGATACGGT
GAACTCTGTTCCCGAACACTCAATTTCTGCTTCTCTCCAAACCTCCGAGGATCACGTGCCTCAC
CCCCTTTCCGGGATTCCCTCGCGTCCGATGCTAACCCTACTCTCAGAACAGTCCTATGCCATAT
AGTCATTCCTCTAACCCTTTATCCCCACCCCAAAACGTTCCCACAGTTTCTAGAATACAAAGTG
TCCCTTCATCCATGTCTTTCGCACTTGTCTCTCCCTTTTCGATTCCTAACGTGCTAAGGAGGTT
GTTATCCATCAAGCAACTGGAACTTTTGTCGCCTGTTCCAGCATGTGCACCCCGGGTGGATTGT
CGCACGACTTATCTCTCTCTCCTCTCTTTCTCTCCGTGAGGAGCCACCACATCCCAGCTCTCTG
ACCCGGTCAGCCAGAGACCCTCTCCTGTGGCTCTTGCGCTTCTCTGCTCTCCCCACGGGTTCCA
CAAGTCACACTTGCACTGCGATGTTTCCCCCCAGCACAGTTCGTTTTCTCCCCGTGGCGCGGCT
CCCGAGCAGCCGCTACACCAGGCGCACCCAGTCCGGGGCCCCGGGACCCGGTTGCCCTCCCGGA
CCCGCGCTACGAGGCCGGAAGCCTCTGCGCCGCCCCTTCCCCGCGCCGCTGGCCTTATCTCCGC
GCACAGGGGCCTCTGGGGAGTGGCGGGCACCCAGAGGAAGCGGGCGGCATGGGCCAGGGGCCCC
GGGGCACGCGCCGCTCGCCAGGCTGCGGGTTGCAGCGGCTGCTGTGGCTCCTGTTGCTGCTCAG
CCTGGCCCGCGGCGCCAGCGGAGAGCCGGGCACGGATGACGTCTGTGCCACTTGCCATGAACAC
GCCACGTGCCAGCAAAAGGAAGGGAAGAGGATCTGTATTTGCAACTATGGGTTTTGGGGCAACG
GGAGGACACGCTGTGTTGACAAAGATGAATGCCAGTTTGGAGCCACCGTGATCTGTGGGAACCA
CACGTCCTGCCACAACACGCCTGGAGGGTTCTACTGCGTTTGCCACACAGGCTATCGGGCCACA
AACAACAAGAAGATGTTCATTCCCAATGATGGCACTTTCTGTGCAGACGTCGATGAGTGTGAAG
ATTCTGGCCTGTGCAGACGTGGAGGTCGGTGTATCAATACTCCTGGGAGCTTTGAATGCTACTG
CATGGAAGGGTATGTGGCAAAGAACGGGTCTGAGCCTTTCCACCCACACGCGGATGCCACATCG
TGCACAGAAATAGACTGTGGCATCCCTCCCGAAGTTCCTGGGGCCTACATCGTGGGAAGCTACA
GCTCCACACTGGGCGGCCAGGCCCATTACAGCTGCAAAGAAGGGTTTCTCAGCATCTCGGGAGA
TAGAGTTTCACGATGCACAGCCCTGGGCGCGTGGGAACCTCCAGAGTTACTCTGCCAAGAGATC
AGCTGTGGCAGTCCCCCTGAAGTTCAGAACGCCATCTTGGTGGGGAATCACAGCTCCAGCCAGG
GGAGTGTGGCTCACTATGACTGCGAGGAGGGCTTTGAGAGTCCTGGAGGAAAGATCACTTCTGT
TTGCACAGACAGCGGCTCCTGGAGTGAGATCACGTATGCATGTGCAGAAATAGCGATGGTAATT
CACGATGTGTGGGTGTTTAATGACACCTGTGTGAGATGGCAAAGAAGCCCAGAGAGAGTGAATT
CCAAGGTCACGTACTTGATACACACTGAAAGACTACAGCCAGATGCTGTGGAGTCCGTTTATGA
GGAGACAATCAATGTGACCACAGACAGCAAGACCCCAGAAGTGTGCCTGCACCTCCAACAAGGA
GCCAATTACACCGTGAGCATTTCCGCAGCCCCTCCCAGGCGCTCTGTGCCCGCCAGCCTTAGCT
TCCAGACCGCTGATGGTCTCTTAGAAGATGATGGAATTTTCAATATTTCAGTATTTAATGAAAC
TTGTTTGAAGTTGAACAGGCATTCTAGGCAAGCTGGATCAGAACAAATGTACCAAGTGGAAGCT
CTGGGTCAGAGGTGGTATCTAGAGAACTTCTATCATGCTGTTTCCTATAACTTCACGACAAGAG
ACCAAGCTCCTAAACTGTGTTTAGATCTGTTGCCCGCTACTGATTACATGATAAACATCACCCT
TCTGAGACCCACCGAACTGCGCTCCGCACAAGTAACAGTAACAACCTCGGCGACAGAGCCCCCC
CTTCCAGAAGTAGACTTTTTCACTGTGCGTGGAAGGCTTCTACCAAGCTTCAGGCTTCGGAAAG
CCAAGGAGATAAATGGACCTATCAGTTCATATCAGGTGTTGGTCCTCCCCCTGTCCTTGCAAAG
CACGTTTTCTTGTGATTCTGAAGGCATCACTTCATTCTTTGGCAACGCGTCTCCTGCTGATGGA
TATGTGGCTGCAGAAATACTGGCCAGTGATGTTCCAGATGACACATTGGAGATATCCATTGGAG
ACAGGCTGTACTATGGGGAATATTATAACGCACCTTTGAAGACAGTAAATGAGTATTGCATTCT
ATTACGGATCACAAGTGAATGGAACAAGGTGAGAAGATACTCCTGTGCTGTCATGGCTGAGGTA
AAAGACTCATCACTCACAGTCCAGCAGATGGTGGGTGTTGGACTGGGCTCCGTGGCTTTTGTGA
CCATTCTTGCGTTCCTCTCCTTCTCAGCAGTGTGATGGCTGGTGGACTCAGCATGGGAAGACCG
AGTTGATGATGCACAGATATTCTGCCGGCTTCTCAGGCCTGTCCGCCACGTGGCTCCCATCCTA
AGCCCTTGTGTGGGGTCGAAACTTTCTCCATCCCAGCGTGACCCCATCCCTGAGTTCAAGATGG
CCATCTGTGTGGAATCTTAAAACTTGAGAGCTGTTTATGTGTTTCATGCTTTCTGGGTCAGTTG
TGTATCCATGAACTTGAGACTCATGTCCAGTGTAATACCACAGGCCACAGACGCCATGAGTCAG
CTCCCGGGGTCGTTGGACGTGGAGCCTCTGTATCTTCCTGTAATTAGTTCTTCTGCTCTTAGTT
CAGGATCTGTTCTTCTCAGTGGGTAATGAGTGGGCGTAAGTCTGGGCAGGGATTTGGGAAGGAG
GTCACTGGATAAGGAACGCTGATATGAATAAATGTTTTGGGCGTTTTAGGATGAGCCTATACCA
GAAAGTACAATAACCTGGCCACGCCCCCAGGTTCCCTCCCTAGCTCTGATATAATTCCAGTTGT
TCGTGTGACACCAGAAGTGACGTCCCAGAAGAACCCATTCTGTGATCTCCACAATTCTTCCTCT
TTGTCCCCCTTTTCTTACTCCTTATCTATAAAATTGTTCTCTGCCTCCCTTGA

hide sequence

RefSeq Acc Id:

XM_006238212 ⟹ XP_006238274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,792 - 79,076,121 (-)	NCBI
mRatBN7.2	5	74,157,653 - 74,281,171 (-)	NCBI
Rnor_6.0	5	76,514,780 - 76,636,486 (-)	NCBI
Rnor_5.0	5	80,652,549 - 80,774,351 (-)	NCBI

Sequence:

show sequence

CTCTACCACTGAGCCAAATCCCCAACCCCACGGTGAAACTCTTTACCGGACCAAAGATGGGCAT
CACAGAGCTTACTTCAACCTGACAGGCTACCGCACCGTTCCCCGCTTTAGCGGAGCATTGCCAA
GTCCCAGGTTATGGCCTCTGCTTATGACTACGTCTGTGCCACTTGCCATGAACACGCCACGTGC
CAGCAAAAGGAAGGGAAGAGGATCTGTATTTGCAACTATGGGTTTTGGGGCAACGGGAGGACAC
GCTGTGTTGACAAAGATGAATGCCAGTTTGGAGCCACCGTGATCTGTGGGAACCACACGTCCTG
CCACAACACGCCTGGAGGGTTCTACTGCGTTTGCCACACAGGCTATCGGGCCACAAACAACAAG
AAGATGTTCATTCCCAATGATGGCACTTTCTGTGCAGACGTCGATGAGTGTGAAGATTCTGGCC
TGTGCAGACGTGGAGGTCGGTGTATCAATACTCCTGGGAGCTTTGAATGCTACTGCATGGAAGG
GTATGTGGCAAAGAACGGGTCTGAGCCTTTCCACCCACACGCGGATGCCACATCGTGCACAGAA
ATAGACTGTGGCATCCCTCCCGAAGTTCCTGGGGCCTACATCGTGGGAAGCTACAGCTCCACAC
TGGGCGGCCAGGCCCATTACAGCTGCAAAGAAGGGTTTCTCAGCATCTCGGGAGATAGAGTTTC
ACGATGCACAGCCCTGGGCGCGTGGGAACCTCCAGAGTTACTCTGCCAAGAGATCAGCTGTGGC
AGTCCCCCTGAAGTTCAGAACGCCATCTTGGTGGGGAATCACAGCTCCAGCCAGGGGAGTGTGG
CTCACTATGACTGCGAGGAGGGCTTTGAGAGTCCTGGAGGAAAGATCACTTCTGTTTGCACAGA
CAGCGGCTCCTGGAGTGAGATCACGTATGCATGTGCAGAAATAGCGATGGTAATTCACGATGTG
TGGGTGTTTAATGACACCTGTGTGAGATGGCAAAGAAGCCCAGAGAGAGTGAATTCCAAGGTCA
CGTACTTGATACACACTGAAAGACTACAGCCAGATGCTGTGGAGTCCGTTTATGAGGAGACAAT
CAATGTGACCACAGACAGCAAGACCCCAGAAGTGTGCCTGCACCTCCAACAAGGAGCCAATTAC
ACCGTGAGCATTTCCGCAGCCCCTCCCAGGCGCTCTGTGCCCGCCAGCCTTAGCTTCCAGACCG
CTGAAGATGGTCTCTTAGAAGATGATGGAATTTTCAATATTTCAGTATTTAATGAAACTTGTTT
GAAGTTGAACAGGCATTCTAGGCAAGCTGGATCAGAACAAATGTACCAAGTGGAAGCTCTGGGT
CAGAGGTGGTATCTAGAGAACTTCTATCATGCTGTTTCCTATAACTTCACGACAAGAGACCAAG
CTCCTAAACTGTGTTTAGATCTGTTGCCCGCTACTGATTACATGATAAACATCACCCTTCTGAG
ACCCACCGAACTGCGCTCCGCACAAGTAACAGTAACAACCTCGGCGACAGAGCCCCCCCTTCCA
GAAGTAGACTTTTTCACTGTGCGTGGAAGGCTTCTACCAAGCTTCAGGCTTCGGAAAGCCAAGG
AGATAAATGGACCTATCAGTTCATATCAGGTGTTGGTCCTCCCCCTGTCCTTGCAAAGCACGTT
TTCTTGTGATTCTGAAGGCATCACTTCATTCTTTGGCAACGCGTCTCCTGCTGATGGATATGTG
GCTGCAGAAATACTGGCCAGTGATGTTCCAGATGACACATTGGAGATATCCATTGGAGACAGGC
TGTACTATGGGGAATATTATAACGCACCTTTGAAGACAGTAAATGAGTATTGCATTCTATTACG
GATCACAAGTGAATGGAACAAGGTGAGAAGATACTCCTGTGCTGTCATGGCTGAGGTAAAAGAC
TCATCACTCACAGTCCAGCAGATGGTGGGTGTTGGACTGGGCTCCGTGGCTTTTGTGACCATTC
TTGCGTTCCTCTCCTTCTCAGCAGTGTGATGGCTGGTGGACTCAGCATGGGAAGACCGAGTTGA
TGATGCACAGATATTCTGCCGGCTTCTCAGGCCTGTCCGCCACGTGGCTCCCATCCTAAGCCCT
TGTGTGGGGTCGAAACTTTCTCCATCCCAGCGTGACCCCATCCCTGAGTTCAAGATGGCCATCT
GTGTGGAATCTTAAAACTTGAGAGCTGTTTATGTGTTTCATGCTTTCTGGGTCAGTTGTGTATC
CATGAACTTGAGACTCATGTCCAGTGTAATACCACAGGCCACAGACGCCATGAGTCAGCTCCCG
GGGTCGTTGGACGTGGAGCCTCTGTATCTTCCTGTAATTAGTTCTTCTGCTCTTAGTTCAGGAT
CTGTTCTTCTCAGTGGGTAATGAGTGGGCGTAAGTCTGGGCAGGGATTTGGGAAGGAGGTCACT
GGATAAGGAACGCTGATATGAATAAATGTTTTGGGCGTTTTAGGATGAGCCTATACCAGAAAGT
ACAATAACCTGGCCACGCCCCCAGGTTCCCTCCCTAGCTCTGATATAATTCCAGTTGTTCGTGT
GACACCAGAAGTGACGTCCCAGAAGAACCCATTCTGTGATCTCCACAATTCTTCCTCTTTGTCC
CCCTTTTCTTACTCCTTATCTATAAAATTGTTCTCTGCCTCCCTTGA

hide sequence

RefSeq Acc Id:

XM_006238213 ⟹ XP_006238275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,792 - 79,073,456 (-)	NCBI
mRatBN7.2	5	74,157,653 - 74,277,395 (-)	NCBI
Rnor_6.0	5	76,514,780 - 76,634,046 (-)	NCBI
Rnor_5.0	5	80,652,549 - 80,774,351 (-)	NCBI

Sequence:

show sequence

AGTTCAGGCTGTCCTGGAACTTGCTGTGGGTAGACCAAGGTGCTTGGAATTCACCTCCTTCTGC
TTCTGCCTCCTGACTGCTGGGATTAAAGGCATGCACCTACATGTGTGGGCTCTCAGGATTTCTT
TCTACCCAGGTAAAGGTAAAGGACCCCAGACAGTTCCGATTGATAATGCTGTCGTCGGGGTTAC
TCTTATAAAGCCACAAGTAACCCAAATAACAACCAGGACGTTCATAAAAGTACACTTTCGAATT
GGATATCTACCCCATGCTGTGCTAAAAAGACACCTAGTAATTTCCCTTCCCAATTACAAGCTTT
GGATAATTTTTTTTTCTGGCATCACCTGTGTGTGTGTGTGTGTTTTAAAGTATACATACATATT
TATTTCGCAGAAGGGCATGGGGAGTGGAAGTTAAAGTTGTTTTAAAAATCTCTTGAATGGTGGA
TTTGTGGAAATAATGACCTGTGAGAGTTCATGGAGAGCTGGTTTTACCAAAAGTTGTCCAAACA
CCCAGAGACATGTTTACACTCACTTGATCCATCTCTCATTTCCCAAAGCAGGCTTCTCTCTTTG
TTGGACAAAAATAATCTTCAAGAAAGCTAGATACAAGAAACTAGGAAGTTTATTTTTAACGGCT
TTTTCCTAAGGCAGCCCAAGTTCAGCCCTTATATGGGTGTATTTGCCTATAGTTGAGGTAGGGT
TAGTTTACTGGTGAGGAAGCAAGTAAGAGTACCTGCCGAGTGGGGAGGCCCCCTGCACTTGGAC
AGCCCCCTCTCCCCCAAACGGATCTCACTTCTTCAGCCTCCCTCAACCCCAATTTCCAACTCCT
GTGTTAACTCTCTGCCTCCCAGCCTCCCACTCCAGTCCACCCAAAGCATAGATCTAAGCGACAT
TCCCAGTTTCTCCTTAATTTAATATTTTCCTCTCTCCAACAGTGCACTAATCTTAAGATACGGT
GAACTCTGTTCCCGAACACTCAATTTCTGCTTCTCTCCAAACCTCCGAGGATCACGTGCCTCAC
CCCCTTTCCGGGATTCCCTCGCGTCCGATGCTAACCCTACTCTCAGAACAGTCCTATGCCATAT
AGTCATTCCTCTAACCCTTTATCCCCACCCCAAAACGTTCCCACAGTTTCTAGAATACAAAGTG
TCCCTTCATCCATGTCTTTCGCACTTGTCTCTCCCTTTTCGATTCCTAACGTGCTAAGGAGGTT
GTTATCCATCAAGCAACTGGAACTTTTGTCGCCTGTTCCAGCATGTGCACCCCGGGTGGATTGT
CGCACGACTTATCTCTCTCTCCTCTCTTTCTCTCCGTGAGGAGCCACCACATCCCAGCTCTCTG
ACCCGGTCAGCCAGAGACCCTCTCCTGTGGCTCTTGCGCTTCTCTGCTCTCCCCACGGGTTCCA
CAAGTCACACTTGCACTGCGATGTTTCCCCCCAGCACAGTTCGTTTTCTCCCCGTGGCGCGGCT
CCCGAGCAGCCGCTACACCAGGCGCACCCAGTCCGGGGCCCCGGGACCCGGTTGCCCTCCCGGA
CCCGCGCTACGAGGCCGGAAGCCTCTGCGCCGCCCCTTCCCCGCGCCGCTGGCCTTATCTCCGC
GCACAGGGGCCTCTGGGGAGTGGCGGGCACCCAGAGGAAGCGGGCGGCATGGGCCAGGGGCCCC
GGGGCACGCGCCGCTCGCCAGGCTGCGGGTTGCAGCGGCTGCTGTGGCTCCTGTTGCTGCTCAG
CCTGGCCCGCGGCGCCAGCGGAGAGCCGGGCACGGATGACGTCTGTGCCACTTGCCATGAACAC
GCCACGTGCCAGCAAAAGGAAGGGAAGAGGATCTGTATTTGCAACTATGGGTTTTGGGGCAACG
GGAGGACACGCTGTGTTGACAAAGATGAATGCCAGTTTGGAGCCACCGTGATCTGTGGGAACCA
CACGTCCTGCCACAACACGCCTGGAGGGTTCTACTGCGTTTGCCACACAGGCTATCGGGCCACA
AACAACAAGAAGATGTTCATTCCCAATGATGGCACTTTCTGTGCAGACGTCGATGAGTGTGAAG
ATTCTGGCCTGTGCAGACGTGGAGGTCGGTGTATCAATACTCCTGGGAGCTTTGAATGCTACTG
CATGGAAGGGTATGTGGCAAAGAACGGGTCTGAGCCTTTCCACCCACACGCGGATGCCACATCG
TGCACAGAGATCAGCTGTGGCAGTCCCCCTGAAGTTCAGAACGCCATCTTGGTGGGGAATCACA
GCTCCAGCCAGGGGAGTGTGGCTCACTATGACTGCGAGGAGGGCTTTGAGAGTCCTGGAGGAAA
GATCACTTCTGTTTGCACAGACAGCGGCTCCTGGAGTGAGATCACGTATGCATGTGCAGAAATA
GCGATGGTAATTCACGATGTGTGGGTGTTTAATGACACCTGTGTGAGATGGCAAAGAAGCCCAG
AGAGAGTGAATTCCAAGGTCACGTACTTGATACACACTGAAAGACTACAGCCAGATGCTGTGGA
GTCCGTTTATGAGGAGACAATCAATGTGACCACAGACAGCAAGACCCCAGAAGTGTGCCTGCAC
CTCCAACAAGGAGCCAATTACACCGTGAGCATTTCCGCAGCCCCTCCCAGGCGCTCTGTGCCCG
CCAGCCTTAGCTTCCAGACCGCTGAAGATGGTCTCTTAGAAGATGATGGAATTTTCAATATTTC
AGTATTTAATGAAACTTGTTTGAAGTTGAACAGGCATTCTAGGCAAGCTGGATCAGAACAAATG
TACCAAGTGGAAGCTCTGGGTCAGAGGTGGTATCTAGAGAACTTCTATCATGCTGTTTCCTATA
ACTTCACGACAAGAGACCAAGCTCCTAAACTGTGTTTAGATCTGTTGCCCGCTACTGATTACAT
GATAAACATCACCCTTCTGAGACCCACCGAACTGCGCTCCGCACAAGTAACAGTAACAACCTCG
GCGACAGAGCCCCCCCTTCCAGAAGTAGACTTTTTCACTGTGCGTGGAAGGCTTCTACCAAGCT
TCAGGCTTCGGAAAGCCAAGGAGATAAATGGACCTATCAGTTCATATCAGGTGTTGGTCCTCCC
CCTGTCCTTGCAAAGCACGTTTTCTTGTGATTCTGAAGGCATCACTTCATTCTTTGGCAACGCG
TCTCCTGCTGATGGATATGTGGCTGCAGAAATACTGGCCAGTGATGTTCCAGATGACACATTGG
AGATATCCATTGGAGACAGGCTGTACTATGGGGAATATTATAACGCACCTTTGAAGACAGTAAA
TGAGTATTGCATTCTATTACGGATCACAAGTGAATGGAACAAGGTGAGAAGATACTCCTGTGCT
GTCATGGCTGAGGTAAAAGACTCATCACTCACAGTCCAGCAGATGGTGGGTGTTGGACTGGGCT
CCGTGGCTTTTGTGACCATTCTTGCGTTCCTCTCCTTCTCAGCAGTGTGATGGCTGGTGGACTC
AGCATGGGAAGACCGAGTTGATGATGCACAGATATTCTGCCGGCTTCTCAGGCCTGTCCGCCAC
GTGGCTCCCATCCTAAGCCCTTGTGTGGGGTCGAAACTTTCTCCATCCCAGCGTGACCCCATCC
CTGAGTTCAAGATGGCCATCTGTGTGGAATCTTAAAACTTGAGAGCTGTTTATGTGTTTCATGC
TTTCTGGGTCAGTTGTGTATCCATGAACTTGAGACTCATGTCCAGTGTAATACCACAGGCCACA
GACGCCATGAGTCAGCTCCCGGGGTCGTTGGACGTGGAGCCTCTGTATCTTCCTGTAATTAGTT
CTTCTGCTCTTAGTTCAGGATCTGTTCTTCTCAGTGGGTAATGAGTGGGCGTAAGTCTGGGCAG
GGATTTGGGAAGGAGGTCACTGGATAAGGAACGCTGATATGAATAAATGTTTTGGGCGTTTTAG
GATGAGCCTATACCAGAAAGTACAATAACCTGGCCACGCCCCCAGGTTCCCTCCCTAGCTCTGA
TATAATTCCAGTTGTTCGTGTGACACCAGAAGTGACGTCCCAGAAGAACCCATTCTGTGATCTC
CACAATTCTTCCTCTTTGTCCCCCTTTTCTTACTCCTTATCTATAAAATTGTTCTCTGCCTCCC
TTGA

hide sequence

RefSeq Acc Id:

XM_039111046 ⟹ XP_038966974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,792 - 79,073,457 (-)	NCBI
mRatBN7.2	5	74,157,653 - 74,277,397 (-)	NCBI

RefSeq Acc Id:

XM_039111047 ⟹ XP_038966975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,792 - 79,074,043 (-)	NCBI
mRatBN7.2	5	74,157,653 - 74,277,406 (-)	NCBI

RefSeq Acc Id:

XM_039111048 ⟹ XP_038966976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,792 - 79,073,457 (-)	NCBI
mRatBN7.2	5	74,157,653 - 74,277,397 (-)	NCBI

RefSeq Acc Id:

XM_039111049 ⟹ XP_038966977

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,952,792 - 79,059,147 (-)	NCBI
mRatBN7.2	5	74,157,653 - 74,264,877 (-)	NCBI

RefSeq Acc Id:

XM_039111050 ⟹ XP_038966978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,953,587 - 79,073,458 (-)	NCBI
mRatBN7.2	5	74,158,568 - 74,277,398 (-)	NCBI

RefSeq Acc Id:

XM_039111051 ⟹ XP_038966979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	78,978,639 - 79,073,458 (-)	NCBI
mRatBN7.2	5	74,193,541 - 74,277,398 (-)	NCBI

RefSeq Acc Id:

XM_039111052 ⟹ XP_038966980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	79,000,522 - 79,073,459 (-)	NCBI
mRatBN7.2	5	74,205,517 - 74,277,397 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414184	(Get FASTA)	NCBI Sequence Viewer
	XP_006238273	(Get FASTA)	NCBI Sequence Viewer
	XP_006238274	(Get FASTA)	NCBI Sequence Viewer
	XP_006238275	(Get FASTA)	NCBI Sequence Viewer
	XP_038966974	(Get FASTA)	NCBI Sequence Viewer
	XP_038966975	(Get FASTA)	NCBI Sequence Viewer
	XP_038966976	(Get FASTA)	NCBI Sequence Viewer
	XP_038966977	(Get FASTA)	NCBI Sequence Viewer
	XP_038966978	(Get FASTA)	NCBI Sequence Viewer
	XP_038966979	(Get FASTA)	NCBI Sequence Viewer
	XP_038966980	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91641	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000068702.2
	ENSRNOP00000105553
	ENSRNOP00000105553.1

RefSeq Acc Id:	XP_006238274 ⟸ XM_006238212
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JTG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAYDYVCATCHEHATCQQKEGKRICICNYGFWGNGRTRCVDKDECQFGATVICGNHTSCHNT PGGFYCVCHTGYRATNNKKMFIPNDGTFCADVDECEDSGLCRRGGRCINTPGSFECYCMEGYVA KNGSEPFHPHADATSCTEIDCGIPPEVPGAYIVGSYSSTLGGQAHYSCKEGFLSISGDRVSRCT ALGAWEPPELLCQEISCGSPPEVQNAILVGNHSSSQGSVAHYDCEEGFESPGGKITSVCTDSGS WSEITYACAEIAMVIHDVWVFNDTCVRWQRSPERVNSKVTYLIHTERLQPDAVESVYEETINVT TDSKTPEVCLHLQQGANYTVSISAAPPRRSVPASLSFQTAEDGLLEDDGIFNISVFNETCLKLN RHSRQAGSEQMYQVEALGQRWYLENFYHAVSYNFTTRDQAPKLCLDLLPATDYMINITLLRPTE LRSAQVTVTTSATEPPLPEVDFFTVRGRLLPSFRLRKAKEINGPISSYQVLVLPLSLQSTFSCD SEGITSFFGNASPADGYVAAEILASDVPDDTLEISIGDRLYYGEYYNAPLKTVNEYCILLRITS EWNKVRRYSCAVMAEVKDSSLTVQQMVGVGLGSVAFVTILAFLSFSAV hide sequence

RefSeq Acc Id:	XP_006238273 ⟸ XM_006238211
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGQGPRGTRRSPGCGLQRLLWLLLLLSLARGASGEPGTDDVCATCHEHATCQQKEGKRICICNY GFWGNGRTRCVDKDECQFGATVICGNHTSCHNTPGGFYCVCHTGYRATNNKKMFIPNDGTFCAD VDECEDSGLCRRGGRCINTPGSFECYCMEGYVAKNGSEPFHPHADATSCTEIDCGIPPEVPGAY IVGSYSSTLGGQAHYSCKEGFLSISGDRVSRCTALGAWEPPELLCQEISCGSPPEVQNAILVGN HSSSQGSVAHYDCEEGFESPGGKITSVCTDSGSWSEITYACAEIAMVIHDVWVFNDTCVRWQRS PERVNSKVTYLIHTERLQPDAVESVYEETINVTTDSKTPEVCLHLQQGANYTVSISAAPPRRSV PASLSFQTADGLLEDDGIFNISVFNETCLKLNRHSRQAGSEQMYQVEALGQRWYLENFYHAVSY NFTTRDQAPKLCLDLLPATDYMINITLLRPTELRSAQVTVTTSATEPPLPEVDFFTVRGRLLPS FRLRKAKEINGPISSYQVLVLPLSLQSTFSCDSEGITSFFGNASPADGYVAAEILASDVPDDTL EISIGDRLYYGEYYNAPLKTVNEYCILLRITSEWNKVRRYSCAVMAEVKDSSLTVQQMVGVGLG SVAFVTILAFLSFSAV hide sequence

RefSeq Acc Id:

XP_006238275 ⟸ XM_006238213

- Peptide Label:

isoform X5

- Sequence:

show sequence

MGQGPRGTRRSPGCGLQRLLWLLLLLSLARGASGEPGTDDVCATCHEHATCQQKEGKRICICNY
GFWGNGRTRCVDKDECQFGATVICGNHTSCHNTPGGFYCVCHTGYRATNNKKMFIPNDGTFCAD
VDECEDSGLCRRGGRCINTPGSFECYCMEGYVAKNGSEPFHPHADATSCTEISCGSPPEVQNAI
LVGNHSSSQGSVAHYDCEEGFESPGGKITSVCTDSGSWSEITYACAEIAMVIHDVWVFNDTCVR
WQRSPERVNSKVTYLIHTERLQPDAVESVYEETINVTTDSKTPEVCLHLQQGANYTVSISAAPP
RRSVPASLSFQTAEDGLLEDDGIFNISVFNETCLKLNRHSRQAGSEQMYQVEALGQRWYLENFY
HAVSYNFTTRDQAPKLCLDLLPATDYMINITLLRPTELRSAQVTVTTSATEPPLPEVDFFTVRG
RLLPSFRLRKAKEINGPISSYQVLVLPLSLQSTFSCDSEGITSFFGNASPADGYVAAEILASDV
PDDTLEISIGDRLYYGEYYNAPLKTVNEYCILLRITSEWNKVRRYSCAVMAEVKDSSLTVQQMV
GVGLGSVAFVTILAFLSFSAV

hide sequence

Ensembl Acc Id:

ENSRNOP00000068702 ⟸ ENSRNOT00000085109

RefSeq Acc Id:	XP_038966975 ⟸ XM_039111047
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JTG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966976 ⟸ XM_039111048
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038966974 ⟸ XM_039111046
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JTG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966977 ⟸ XM_039111049
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038966978 ⟸ XM_039111050
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038966979 ⟸ XM_039111051
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038966980 ⟸ XM_039111052
- Peptide Label:	isoform X10

RefSeq Acc Id:	NP_001414184 ⟸ NM_001427255
- Peptide Label:	precursor
- UniProtKB:	A0A0G2JTG3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105553 ⟸ ENSRNOT00000173331

Protein Domains

EGF-like Sushi

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JTG3-F1-model_v2	AlphaFold	A0A0G2JTG3	1-634	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306966	AgrOrtholog
BioCyc Gene	G2FUF-41151	BioCyc
Ensembl Genes	ENSRNOG00000056819	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085109.3	UniProtKB/TrEMBL
	ENSRNOT00000173331	ENTREZGENE
	ENSRNOT00000173331.1	UniProtKB/TrEMBL
Gene3D-CATH	Complement Module, domain 1	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
InterPro	EGF-like_Ca-bd_dom	UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/TrEMBL
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/TrEMBL
	EGF_Ca-bd_CS	UniProtKB/TrEMBL
	Fn3_PTPRU	UniProtKB/TrEMBL
	Growth_fac_rcpt_N_dom	UniProtKB/TrEMBL
	NOTCH1_EGF-like	UniProtKB/TrEMBL
	R-tyr_protein_phosphatases	UniProtKB/TrEMBL
	Sushi/SCR/CCP_sf	UniProtKB/TrEMBL
	Sushi_SCR_CCP_dom	UniProtKB/TrEMBL
NCBI Gene	298031	ENTREZGENE
PANTHER	SUSHI DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	SUSHI DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	EGF_CA	UniProtKB/TrEMBL
	Fn3_PTPRU	UniProtKB/TrEMBL
	Sushi	UniProtKB/TrEMBL
PhenoGen	Susd1	PhenoGen
PROSITE	ASX_HYDROXYL	UniProtKB/TrEMBL
	EGF_2	UniProtKB/TrEMBL
	EGF_3	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
	SUSHI	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000056819	RatGTEx
SMART	CCP	UniProtKB/TrEMBL
	EGF	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
	SSF57184	UniProtKB/TrEMBL
	SSF57535	UniProtKB/TrEMBL
UniProt	A0A0G2JTG3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LXF8_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Susd1	sushi domain containing 1	Susd1_predicted	sushi domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Susd1_predicted	sushi domain containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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