Odad2 (outer dynein arm docking complex subunit 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Odad2 (outer dynein arm docking complex subunit 2) Rattus norvegicus
Analyze
Symbol: Odad2
Name: outer dynein arm docking complex subunit 2
RGD ID: 1306933
Description: Predicted to act upstream of or within several processes, including outer dynein arm assembly; regulation of cilium beat frequency; and ventricular system development. Predicted to be located in axoneme and ciliary base. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 23. Orthologous to human ODAD2 (outer dynein arm docking complex subunit 2); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: armadillo repeat containing 4; armadillo repeat-containing protein 4; Armc4; ddx5-ps1; ddx5-ps1 pseudogene; LOC307036; outer dynein arm-docking complex subunit 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Odad2-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81759,910,665 - 60,104,929 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1759,910,757 - 60,103,547 (-)EnsemblGRCr8
mRatBN7.21755,216,877 - 55,409,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1755,218,991 - 55,409,399 (-)EnsemblmRatBN7.2
Rnor_6.01760,283,926 - 60,474,289 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1760,287,203 - 60,474,031 (+)Ensemblrn6Rnor6.0
Rnor_5.01762,066,918 - 62,257,047 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41763,775,126 - 63,955,410 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1756,560,554 - 56,750,067 (-)NCBICelera
RGSC_v3.11763,786,039 - 63,953,004 (-)NCBI
Cytogenetic Map17q12.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axoneme  (IEA,ISO)
ciliary base  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:23849778   PMID:24203976   PMID:25807483  


Genomics

Comparative Map Data
Odad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81759,910,665 - 60,104,929 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1759,910,757 - 60,103,547 (-)EnsemblGRCr8
mRatBN7.21755,216,877 - 55,409,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1755,218,991 - 55,409,399 (-)EnsemblmRatBN7.2
Rnor_6.01760,283,926 - 60,474,289 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1760,287,203 - 60,474,031 (+)Ensemblrn6Rnor6.0
Rnor_5.01762,066,918 - 62,257,047 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41763,775,126 - 63,955,410 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1756,560,554 - 56,750,067 (-)NCBICelera
RGSC_v3.11763,786,039 - 63,953,004 (-)NCBI
Cytogenetic Map17q12.1NCBI
ODAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381027,812,168 - 27,999,675 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1027,775,186 - 27,999,532 (-)Ensemblhg38GRCh38
GRCh371028,101,097 - 28,288,008 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361028,141,103 - 28,327,983 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341028,141,102 - 28,327,983NCBI
Celera1027,864,582 - 28,051,379 (-)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1027,817,751 - 28,004,707 (-)NCBIHuRef
CHM1_11028,101,042 - 28,287,886 (-)NCBICHM1_1
T2T-CHM13v2.01027,843,337 - 28,030,843 (-)NCBIT2T-CHM13v2.0
Odad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,088,233 - 7,298,272 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,088,209 - 7,297,936 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38187,088,233 - 7,298,273 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,088,209 - 7,297,936 (-)Ensemblmm10GRCm38
MGSCv37187,088,231 - 7,297,899 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36187,088,231 - 7,297,934 (-)NCBIMGSCv36mm8
Celera187,133,778 - 7,343,791 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map184.53NCBI
Odad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554621,709,493 - 1,884,900 (-)Ensembl
ChiLan1.0NW_0049554621,709,493 - 1,885,094 (-)NCBIChiLan1.0ChiLan1.0
LOC100973318
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2840,453,768 - 40,668,251 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11040,450,070 - 40,673,652 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01027,959,535 - 28,133,143 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11028,304,279 - 28,490,897 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1028,320,425 - 28,502,925 (-)EnsemblpanPan2panpan1.1
LOC607539
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124,769,681 - 5,037,592 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24,455,195 - 4,700,784 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.024,601,941 - 4,634,006 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
Odad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093447,604,998 - 7,768,961 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366132,155,965 - 2,315,924 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366132,155,624 - 2,316,168 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1039,274,932 - 39,462,846 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11039,276,423 - 39,463,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21053,334,325 - 53,520,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ODAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1927,369,965 - 27,563,798 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl927,369,971 - 27,550,110 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605133,389,770 - 33,594,319 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Odad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248056,193,217 - 6,362,776 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248056,192,843 - 6,365,982 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Odad2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11428,671,570 - 28,838,443 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Odad2
1317 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:32
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000025585
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174949693265155015Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175819406487388164Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat

Markers in Region
D17Mit10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,237,868 - 55,238,103 (-)MAPPERmRatBN7.2
Rnor_6.01760,455,287 - 60,455,521NCBIRnor6.0
Rnor_5.01762,238,146 - 62,238,380UniSTSRnor5.0
RGSC_v3.41763,793,737 - 63,793,972RGDRGSC3.4
RGSC_v3.41763,793,738 - 63,793,972UniSTSRGSC3.4
Celera1756,579,418 - 56,579,648UniSTS
RGSC_v3.11763,804,566 - 63,804,902RGD
Cytogenetic Map17q12.1UniSTS
RH132321  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,219,239 - 55,219,429 (-)MAPPERmRatBN7.2
Rnor_6.01760,473,942 - 60,474,131NCBIRnor6.0
Rnor_5.01762,256,801 - 62,256,990UniSTSRnor5.0
RGSC_v3.41763,775,110 - 63,775,299UniSTSRGSC3.4
Celera1756,560,713 - 56,560,902UniSTS
RH 3.4 Map17561.2UniSTS
Cytogenetic Map17q12.1UniSTS
RH144559  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,360,499 - 55,360,672 (-)MAPPERmRatBN7.2
Rnor_6.01760,332,119 - 60,332,291NCBIRnor6.0
Rnor_5.01762,116,111 - 62,116,283UniSTSRnor5.0
RGSC_v3.41763,909,349 - 63,909,521UniSTSRGSC3.4
Celera1756,701,205 - 56,701,377UniSTS
RH 3.4 Map17557.7UniSTS
Cytogenetic Map17q12.1UniSTS
AU048067  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81760,063,989 - 60,064,286 (+)Marker Load Pipeline
mRatBN7.21755,368,977 - 55,369,274 (-)MAPPERmRatBN7.2
Rnor_6.01760,323,519 - 60,323,815NCBIRnor6.0
Rnor_5.01762,107,511 - 62,107,807UniSTSRnor5.0
RGSC_v3.41763,917,825 - 63,918,121UniSTSRGSC3.4
Celera1756,709,681 - 56,709,977UniSTS
Cytogenetic Map17q12.1UniSTS
Ddx5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,245,495 - 55,246,484 (-)MAPPERmRatBN7.2
Rnor_6.01760,446,538 - 60,447,526NCBIRnor6.0
Rnor_5.01762,229,397 - 62,230,385UniSTSRnor5.0
Cytogenetic Map17q12.1UniSTS
Cytogenetic Map10q32.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
8 10 26 117 35 42 18 8 18 6 129 57 9 104 38 68 24 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000025585   ⟹   ENSRNOP00000025585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1759,910,757 - 60,103,547 (-)Ensembl
mRatBN7.2 Ensembl1755,218,991 - 55,409,399 (-)Ensembl
Rnor_6.0 Ensembl1760,287,203 - 60,474,031 (+)Ensembl
RefSeq Acc Id: NM_001427763   ⟹   NP_001414692
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,757 - 60,103,547 (-)NCBI
RefSeq Acc Id: XM_039096475   ⟹   XP_038952403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,665 - 60,104,929 (-)NCBI
mRatBN7.21755,216,877 - 55,409,868 (-)NCBI
RefSeq Acc Id: XM_039096476   ⟹   XP_038952404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,665 - 60,104,929 (-)NCBI
mRatBN7.21755,216,877 - 55,409,872 (-)NCBI
RefSeq Acc Id: XM_039096478   ⟹   XP_038952406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,665 - 60,088,071 (-)NCBI
mRatBN7.21755,216,877 - 55,393,078 (-)NCBI
RefSeq Acc Id: XM_063276478   ⟹   XP_063132548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,932,901 - 60,104,363 (-)NCBI
RefSeq Acc Id: XM_063276479   ⟹   XP_063132549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,956,805 - 60,104,363 (-)NCBI
Ensembl Acc Id: ENSRNOP00000025585   ⟸   ENSRNOT00000025585
RefSeq Acc Id: XP_038952404   ⟸   XM_039096476
- Peptide Label: isoform X3
- UniProtKB: A6KPM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952403   ⟸   XM_039096475
- Peptide Label: isoform X1
- UniProtKB: D3ZXG2 (UniProtKB/TrEMBL),   A6KPM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952406   ⟸   XM_039096478
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001414692   ⟸   NM_001427763
- UniProtKB: A6KPM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132548   ⟸   XM_063276478
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132549   ⟸   XM_063276479
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXG2-F1-model_v2 AlphaFold D3ZXG2 1-1036 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306933 AgrOrtholog
BioCyc Gene G2FUF-8969 BioCyc
Ensembl Genes ENSRNOG00000018905 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025585 ENTREZGENE
  ENSRNOT00000025585.8 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
NCBI Gene 307036 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 UniProtKB/TrEMBL
  OUTER DYNEIN ARM-DOCKING COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
  HEAT_2 UniProtKB/TrEMBL
PhenoGen Odad2 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018905 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A6KPM4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXG2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-12 Odad2  outer dynein arm docking complex subunit 2  Armc4  armadillo repeat containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Armc4  armadillo repeat containing 4   Armc4_predicted  armadillo repeat containing 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Armc4_predicted  armadillo repeat containing 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED