Dynlrb2 (dynein light chain roadblock-type 2) - Rat Genome Database

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Gene: Dynlrb2 (dynein light chain roadblock-type 2) Rattus norvegicus
Analyze
Symbol: Dynlrb2
Name: dynein light chain roadblock-type 2
RGD ID: 1306930
Description: Predicted to enable dynein intermediate chain binding activity. Predicted to be involved in microtubule-based movement. Predicted to be located in microtubule. Predicted to be part of cytoplasmic dynein complex. Predicted to be active in centrosome and cytoplasm. Orthologous to human DYNLRB2 (dynein light chain roadblock-type 2); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; allopurinol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Dncl2b; dynein, cytoplasmic, light chain 2B; LOC361415
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81961,428,782 - 61,440,331 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1961,429,065 - 61,441,071 (+)EnsemblGRCr8
mRatBN7.21944,520,134 - 44,531,384 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1944,520,134 - 44,531,387 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1951,343,658 - 51,354,906 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01951,997,103 - 52,008,357 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01954,238,114 - 54,249,368 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01949,016,919 - 49,028,400 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,016,891 - 49,028,404 (+)Ensemblrn6Rnor6.0
Rnor_5.01959,812,610 - 59,823,939 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41946,546,841 - 46,559,015 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1943,808,532 - 43,820,118 (+)NCBICelera
RGSC_v3.11946,551,724 - 46,563,916 (-)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cytoplasmic dynein. Allan VJ, Biochem Soc Trans. 2011 Oct;39(5):1169-78. doi: 10.1042/BST0391169.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Identification of two novel human dynein light chain genes, DNLC2A and DNLC2B, and their expression changes in hepatocellular carcinoma tissues from 68 Chinese patients. Jiang J, etal., Gene. 2001 Dec 27;281(1-2):103-13.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:14752807   PMID:23376485  


Genomics

Comparative Map Data
Dynlrb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81961,428,782 - 61,440,331 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1961,429,065 - 61,441,071 (+)EnsemblGRCr8
mRatBN7.21944,520,134 - 44,531,384 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1944,520,134 - 44,531,387 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1951,343,658 - 51,354,906 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01951,997,103 - 52,008,357 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01954,238,114 - 54,249,368 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01949,016,919 - 49,028,400 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,016,891 - 49,028,404 (+)Ensemblrn6Rnor6.0
Rnor_5.01959,812,610 - 59,823,939 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41946,546,841 - 46,559,015 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1943,808,532 - 43,820,118 (+)NCBICelera
RGSC_v3.11946,551,724 - 46,563,916 (-)NCBI
Cytogenetic Map19q12NCBI
DYNLRB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381680,540,734 - 80,550,811 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1680,540,734 - 80,550,811 (+)Ensemblhg38GRCh38
GRCh371680,574,631 - 80,584,708 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361679,132,355 - 79,142,042 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341679,132,354 - 79,142,040NCBI
Celera1664,873,265 - 64,882,963 (+)NCBICelera
Cytogenetic Map16q23.2NCBI
HuRef1666,331,392 - 66,341,090 (+)NCBIHuRef
CHM1_11681,986,336 - 81,996,023 (+)NCBICHM1_1
T2T-CHM13v2.01686,602,399 - 86,612,488 (+)NCBIT2T-CHM13v2.0
Dynlrb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398117,231,754 - 117,242,654 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8117,231,713 - 117,242,654 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388116,505,015 - 116,515,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8116,504,974 - 116,515,915 (+)Ensemblmm10GRCm38
MGSCv378119,028,915 - 119,039,815 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368119,390,992 - 119,401,892 (+)NCBIMGSCv36mm8
Celera8120,722,918 - 120,733,815 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map863.07NCBI
Dynlrb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,353,087 - 3,365,045 (+)Ensembl
ChiLan1.0NW_0049555223,353,087 - 3,364,276 (+)NCBIChiLan1.0ChiLan1.0
DYNLRB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21890,280,732 - 90,293,480 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11696,200,015 - 96,212,775 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01661,138,632 - 61,148,817 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11680,567,709 - 80,577,616 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1680,566,963 - 80,577,609 (+)EnsemblpanPan2panpan1.1
DYNLRB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1571,169,469 - 71,179,067 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl571,169,469 - 71,179,010 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha571,119,283 - 71,128,891 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0571,474,310 - 71,483,923 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl571,474,305 - 71,484,080 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1571,417,257 - 71,426,870 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0571,253,676 - 71,263,066 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0571,730,501 - 71,740,115 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dynlrb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934931,293,761 - 31,302,742 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647528,286,390 - 28,296,001 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647528,286,434 - 28,295,345 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNLRB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl67,649,699 - 7,661,308 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.167,650,444 - 7,661,380 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.267,608,540 - 7,613,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DYNLRB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1565,994,915 - 66,009,154 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl565,995,228 - 66,004,804 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660479,828,495 - 9,837,976 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dynlrb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247466,804,890 - 6,814,724 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247466,805,245 - 6,814,227 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dynlrb2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11736,138,725 - 36,149,471 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:43
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000016713
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat

Markers in Region
RH132220  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81961,439,350 - 61,440,251 (+)Marker Load Pipeline
mRatBN7.21944,530,404 - 44,531,305 (+)MAPPERmRatBN7.2
Rnor_6.01949,027,421 - 49,028,321NCBIRnor6.0
Rnor_5.01959,822,960 - 59,823,860UniSTSRnor5.0
RGSC_v3.41946,546,920 - 46,547,820UniSTSRGSC3.4
Celera1943,819,139 - 43,820,039UniSTS
RH 3.4 Map19613.2UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 10 37 142 54 57 26 50 26 6 230 113 8 123 72 84 31 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000016713   ⟹   ENSRNOP00000016713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1961,429,065 - 61,441,071 (+)Ensembl
mRatBN7.2 Ensembl1944,520,134 - 44,531,384 (+)Ensembl
Rnor_6.0 Ensembl1949,016,891 - 49,028,404 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097327   ⟹   ENSRNOP00000090644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1944,520,134 - 44,531,387 (+)Ensembl
RefSeq Acc Id: NM_001108451   ⟹   NP_001101921
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,429,080 - 61,440,330 (+)NCBI
mRatBN7.21944,520,134 - 44,531,384 (+)NCBI
Rnor_6.01949,016,919 - 49,028,400 (+)NCBI
Rnor_5.01959,812,610 - 59,823,939 (+)NCBI
RGSC_v3.41946,546,841 - 46,559,015 (-)RGD
Celera1943,808,532 - 43,820,118 (+)RGD
Sequence:
RefSeq Acc Id: XM_063278142   ⟹   XP_063134212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,428,782 - 61,440,331 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101921 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134212 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92633 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016713
  ENSRNOP00000016713.6
RefSeq Acc Id: NP_001101921   ⟸   NM_001108451
- UniProtKB: D4A0A0 (UniProtKB/TrEMBL),   A6IZF5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016713   ⟸   ENSRNOT00000016713
Ensembl Acc Id: ENSRNOP00000090644   ⟸   ENSRNOT00000097327
RefSeq Acc Id: XP_063134212   ⟸   XM_063278142
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ANS4 (UniProtKB/TrEMBL)
Protein Domains
Roadblock/LAMTOR2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0A0-F1-model_v2 AlphaFold D4A0A0 1-96 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701165
Promoter ID:EPDNEW_R11689
Type:multiple initiation site
Name:Dynlrb2_1
Description:dynein light chain roadblock-type 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,016,923 - 49,016,983EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306930 AgrOrtholog
BioCyc Gene G2FUF-5566 BioCyc
Ensembl Genes ENSRNOG00000012450 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016713 ENTREZGENE
  ENSRNOT00000016713.8 UniProtKB/TrEMBL
Gene3D-CATH Dynein light chain 2a, cytoplasmic UniProtKB/TrEMBL
InterPro Dynein_light-rel UniProtKB/TrEMBL
  Dynein_light_roadblock-type UniProtKB/TrEMBL
KEGG Report rno:361415 UniProtKB/TrEMBL
NCBI Gene 361415 ENTREZGENE
PANTHER DYNEIN LIGHT CHAIN ROADBLOCK UniProtKB/TrEMBL
Pfam Robl_LC7 UniProtKB/TrEMBL
PhenoGen Dynlrb2 PhenoGen
PIRSF DLC7 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012450 RatGTEx
SMART Robl_LC7 UniProtKB/TrEMBL
Superfamily-SCOP Roadblock/LC7 domain UniProtKB/TrEMBL
UniProt A0A8I6ANS4 ENTREZGENE
  A6IZF5 ENTREZGENE, UniProtKB/TrEMBL
  D4A0A0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Dynlrb2  dynein light chain roadblock-type 2   Dynlrb2_predicted  dynein light chain roadblock-type 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Dynlrb2_predicted  dynein light chain roadblock-type 2 (predicted)  Dncl2b_predicted  dynein, cytoplasmic, light chain 2B (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Dncl2b_predicted  dynein, cytoplasmic, light chain 2B (predicted)      Symbol and Name status set to approved 70820 APPROVED