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Gene: Psmd7 (proteasome 26S subunit, non-ATPase 7) Rattus norvegicus

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Symbol:

Psmd7

Name:

proteasome 26S subunit, non-ATPase 7

RGD ID:

1306902

Description:

Predicted to enable protein homodimerization activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Orthologous to human PSMD7 (proteasome 26S subunit, non-ATPase 7); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

26S proteasome non-ATPase regulatory subunit 7; LOC307821; proteasome (prosome, macropain) 26S subunit, non-ATPase, 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSMD7 (proteasome 26S subunit, non-ATPase 7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Psmd7 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Psmd7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSMD7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSMD7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psmd7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSMD7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PSMD7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Psmd7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Psmd7 (proteasome 26S subunit, non-ATPase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PSMD7 (proteasome 26S subunit, non-ATPase 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PSMD7 (proteasome 26S subunit, non-ATPase 7)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Psmd7 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Psmd7 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 7)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	psmd7 (proteasome 26S subunit, non-ATPase 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	psmd7 (proteasome 26S subunit, non-ATPase 7)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rpn-8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rpn-8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPN8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPN8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rpn8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rpn8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psmd7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psmd7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	52,404,032 - 52,411,316 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	52,404,032 - 52,417,871 (-)	Ensembl				GRCr8
mRatBN7.2	19	35,494,317 - 35,501,605 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	35,494,316 - 35,501,588 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	42,309,741 - 42,317,031 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	42,963,101 - 42,970,391 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	45,267,767 - 45,275,065 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	39,639,432 - 39,646,718 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	39,639,431 - 39,646,693 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	50,501,208 - 50,508,494 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	37,452,152 - 37,459,440 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	34,916,441 - 34,923,729 (-)	NCBI		Celera
RGSC_v3.1	19	37,457,032 - 37,466,979 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

1H-pyrazole (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aconitine (EXP)

acrolein (ISO)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

bortezomib (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

clozapine (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (EXP,ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

furfural (ISO)

hypochlorous acid (ISO)

indometacin (ISO)

ivermectin (ISO)

leflunomide (EXP)

mechlorethamine (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

miconazole (ISO)

nefazodone (EXP)

nitrates (ISO)

nobiletin (ISO)

ozone (ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

phlorizin (ISO)

pirinixic acid (ISO)

quinoline (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

torcetrapib (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

tunicamycin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

proteasomal protein catabolic process (NAS)

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA)

regulation of AMPA receptor activity (IDA)

Cellular Component

proteasome complex (IBA,IEA,ISO)

proteasome regulatory particle (IEA,ISO)

synaptic vesicle (IDA,NAS)

Molecular Function

metallopeptidase activity (IEA)

peptidase activity (IEA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses.	Sun C, etal., Science. 2023 May 26;380(6647):eadf2018. doi: 10.1126/science.adf2018. Epub 2023 May 26.

Additional References at PubMed

PMID:9688553	PMID:10657252	PMID:17323924	PMID:17559875	PMID:19946888	PMID:20458337	PMID:20498273	PMID:21630459	PMID:21883213	PMID:22871113	PMID:23106098	PMID:23376485
PMID:31904090

Genomics

Comparative Map Data

Psmd7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	52,404,032 - 52,411,316 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	52,404,032 - 52,417,871 (-)	Ensembl				GRCr8
mRatBN7.2	19	35,494,317 - 35,501,605 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	35,494,316 - 35,501,588 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	42,309,741 - 42,317,031 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	42,963,101 - 42,970,391 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	45,267,767 - 45,275,065 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	39,639,432 - 39,646,718 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	39,639,431 - 39,646,693 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	50,501,208 - 50,508,494 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	37,452,152 - 37,459,440 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	34,916,441 - 34,923,729 (-)	NCBI		Celera
RGSC_v3.1	19	37,457,032 - 37,466,979 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

PSMD7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	74,296,814 - 74,306,288 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	74,296,809 - 74,306,288 (+)	Ensembl			hg38	GRCh38
GRCh37	16	74,330,712 - 74,340,186 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	72,888,182 - 72,897,687 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	72,888,181 - 72,897,685	NCBI
Celera	16	58,643,945 - 58,653,450 (+)	NCBI		Celera
Cytogenetic Map	16	q23.1	NCBI
HuRef	16	60,097,897 - 60,107,410 (+)	NCBI		HuRef
CHM1_1	16	75,742,481 - 75,751,994 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	80,114,598 - 80,124,072 (+)	NCBI		T2T-CHM13v2.0

Psmd7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	108,307,012 - 108,315,114 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	108,307,013 - 108,315,096 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	107,580,380 - 107,588,482 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	107,580,381 - 107,588,464 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	110,104,280 - 110,112,382 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	110,469,510 - 110,477,611 (-)	NCBI		MGSCv36	mm8
Celera	8	111,811,707 - 111,820,086 (-)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	54.38	NCBI

Psmd7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	6,824,467 - 6,834,493 (+)	Ensembl
ChiLan1.0	NW_004955484	6,824,467 - 6,832,251 (+)	NCBI	ChiLan1.0	ChiLan1.0

PSMD7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	79,838,951 - 79,848,483 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	85,764,637 - 85,774,142 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	50,690,418 - 50,699,924 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	74,140,338 - 74,149,833 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	74,140,338 - 74,149,833 (+)	Ensembl			panPan2	panpan1.1

PSMD7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	79,785,620 - 79,793,793 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	79,785,645 - 79,793,779 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	79,774,583 - 79,783,222 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	80,215,857 - 80,224,514 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	80,215,876 - 80,228,253 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	80,044,017 - 80,052,656 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	79,733,101 - 79,741,752 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	80,365,793 - 80,374,434 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Psmd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	39,621,738 - 39,630,092 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	19,958,996 - 19,967,412 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	19,959,022 - 19,967,393 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSMD7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	17,047,430 - 17,057,176 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	17,047,420 - 17,057,170 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PSMD7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	57,433,469 - 57,443,013 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	57,433,472 - 57,443,337 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	20,163,279 - 20,172,820 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psmd7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	16,470,221 - 16,482,047 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	16,470,999 - 16,481,791 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Psmd7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	27,304,449 - 27,312,029 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Psmd7
55 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	276
Count of miRNA genes:	176
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000019104
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat

Markers in Region

RH133091

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	35,494,383 - 35,494,598 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	39,639,499 - 39,639,713	NCBI	Rnor6.0
Rnor_5.0	19	50,501,275 - 50,501,489	UniSTS	Rnor5.0
RGSC_v3.4	19	37,452,219 - 37,452,433	UniSTS	RGSC3.4
Celera	19	34,916,508 - 34,916,722	UniSTS
RH 3.4 Map	19	316.1	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH143405

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	35,494,947 - 35,495,119 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	39,640,063 - 39,640,234	NCBI	Rnor6.0
Rnor_5.0	19	50,501,839 - 50,502,010	UniSTS	Rnor5.0
RGSC_v3.4	19	37,452,783 - 37,452,954	UniSTS	RGSC3.4
Celera	19	34,917,072 - 34,917,243	UniSTS
RH 3.4 Map	19	294.5	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019104 ⟹ ENSRNOP00000019104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	52,404,032 - 52,411,316 (-)	Ensembl
mRatBN7.2 Ensembl	19	35,494,318 - 35,501,543 (-)	Ensembl
Rnor_6.0 Ensembl	19	39,639,431 - 39,646,693 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108420 ⟹ ENSRNOP00000090210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	52,404,032 - 52,411,316 (-)	Ensembl
mRatBN7.2 Ensembl	19	35,494,512 - 35,501,546 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110242 ⟹ ENSRNOP00000078910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	52,404,032 - 52,410,902 (-)	Ensembl
mRatBN7.2 Ensembl	19	35,494,316 - 35,501,588 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143135 ⟹ ENSRNOP00000099855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	52,404,032 - 52,417,871 (-)	Ensembl

RefSeq Acc Id:

NM_001107426 ⟹ NP_001100896

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	52,404,032 - 52,411,316 (-)	NCBI
mRatBN7.2	19	35,494,317 - 35,501,605 (-)	NCBI
Rnor_6.0	19	39,639,432 - 39,646,718 (-)	NCBI
Rnor_5.0	19	50,501,208 - 50,508,494 (-)	NCBI
RGSC_v3.4	19	37,452,152 - 37,459,440 (-)	RGD
Celera	19	34,916,441 - 34,923,729 (-)	RGD

Sequence:

show sequence

GAAGTCGACTGTGCGGTGGCGGTCAAACCGGAAGGGGAGGTGCTGGGGCCTGGAGGAGCGGCCT
GTAACGCTGCGGTTGCCGGTGTTTGCGGGTTGCAGGGAGCCGGGCCGGCGGTCGGGCTGTGTCG
CGATGCCGGAGCTGGCGGTGCAGAAAGTGGTGGTCCACCCCCTGGTGCTGCTCAGTGTGGTGGA
TCATTTCAACCGAATCGGCAAGGTTGGAAACCAGAAGCGGGTTGTTGGTGTGCTTTTGGGATCA
TGGCAAAAGAAAGTCCTTGATGTATCCAACAGCTTTGCAGTACCTTTTGATGAAGATGACAAAG
ATGATTCTGTCTGGTTTTTAGACCATGATTATTTGGAAAACATGTATGGGATGTTTAAGAAGGT
CAATGCCAGAGAAAGAATAGTTGGGTGGTACCACACAGGCCCCAAACTGCACAAGAACGATATC
GCCATCAATGAACTCATGAAGAGATACTGCCCCAACTCGGTACTGGTCATTATTGATGTGAAGC
CAAAAGACTTGGGGCTTCCGACCGAAGCCTACATCTCAGTGGAGGAAGTTCATGATGACGGAAC
ACCAACATCAAAAACTTTTGAGCACGTGACTAGTGAAATTGGAGCAGAGGAGGCTGAGGAGGTT
GGAGTGGAGCACTTGTTACGGGACATCAAGGACACTACAGTGGGGACTCTGTCTCAGAGGATCA
CTAACCAGGTCCATGGTTTGAAGGGACTGAACTCCAAGCTCCTGGATATCAGGACCTACCTGGA
GAAGGTAGCCAGCGGCAAGCTACCCATCAACCACCACATCATATACCAGCTGCAGGACGTCTTC
AACCTGCTGCCGGACGCCAGCCTGCAGGAGTTCGTCAAGGCCTTCTACCTGAAGACCAATGACC
AGATGGTTGTGGTGTACCTGGCCTCGCTGATCCGCTCTGTGGTCGCCTTGCATAACCTCATCAA
CAACAAGATTGCCAACCGCGATGCGGAGAAGAAAGAGGGACAGGAGAAGGAGGAGAGCAAGAAG
GAGAGAAAAGACGACAAGGAGAAGGAGAAGAGCGATGCGAAGAAAGAGGAGAAAAAGGAGAAAA
AGTAAATCGTGTAGCTTTTTTAATTTGTAAATTAAAATCTTATAAACTTAACTCCGTGTGCCAC
TAGAGGGTCCTTTGTCACATTCAGTGCTTGTTGACAAGCGCTCTCTGCCCTGGTCACCCTTGCT
GTGGCATTTTGTGGAGATGAATGGACAGAAGGACCGAGCTCAGCCCTATGCCACAGCGTCCGTT
GCATGAGTTGGGGGTGCGGTGGCTCGGGTGTCCCATTGTGAGAACAACGTAATCTGTGGCACTC
TCCTTTTATCCTTAAAAGGAATTTTTTCCTGTCTTATAAGATTCAGGGGTCTGTTGGTGGTAAT
TTTCATAATTGCTAAATGGAATTCATGGACCCCACACTCTGCCACCCAACACTTGAGCTCCGAC
CCCCCTGAACACCAGACCACAGCACATTTTGGACCTGTAACTCGCATTCTTAGGGCTTGGGGTC
CAAGGCCATGTATTGTTTACCTTCAAAGATACAATTAAATGGCTTGGTTTTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100896	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92484	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019104
	ENSRNOP00000019104.6
	ENSRNOP00000078910.2
	ENSRNOP00000090210.1
	ENSRNOP00000099855.1

RefSeq Acc Id:

NP_001100896 ⟸ NM_001107426

- UniProtKB:

A6IZ06 (UniProtKB/TrEMBL), A0A8I5ZM79 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKD
DSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP
KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRIT
NQVHGLKGLNSKLLDIRTYLEKVASGKLPINHHIIYQLQDVFNLLPDASLQEFVKAFYLKTNDQ
MVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQEKEESKKERKDDKEKEKSDAKKEEKKEKK

hide sequence

Ensembl Acc Id:

ENSRNOP00000019104 ⟸ ENSRNOT00000019104

Ensembl Acc Id:

ENSRNOP00000078910 ⟸ ENSRNOT00000110242

Ensembl Acc Id:

ENSRNOP00000090210 ⟸ ENSRNOT00000108420

Ensembl Acc Id:

ENSRNOP00000099855 ⟸ ENSRNOT00000143135

Protein Domains

MPN

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AEH3-F1-model_v2	AlphaFold	D4AEH3	1-320	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701124

Promoter ID:

EPDNEW_R11648

Type:

initiation region

Name:

Psmd7_1

Description:

proteasome 26S subunit, non-ATPase 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	39,646,665 - 39,646,725	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306902	AgrOrtholog
BioCyc Gene	G2FUF-5751	BioCyc
Ensembl Genes	ENSRNOG00000014097	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019104	ENTREZGENE
	ENSRNOT00000019104.8	UniProtKB/TrEMBL
	ENSRNOT00000108420.2	UniProtKB/TrEMBL
	ENSRNOT00000110242.2	UniProtKB/TrEMBL
	ENSRNOT00000143135.1	UniProtKB/TrEMBL
Gene3D-CATH	Cytidine Deaminase, domain 2	UniProtKB/TrEMBL
InterPro	Mov34_MPN_PAD1	UniProtKB/TrEMBL
	MPN	UniProtKB/TrEMBL
	MPN_RPN7_8	UniProtKB/TrEMBL
	Rpn11/EIF3F_C	UniProtKB/TrEMBL
KEGG Report	rno:307821	UniProtKB/TrEMBL
NCBI Gene	307821	ENTREZGENE
PANTHER	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7	UniProtKB/TrEMBL
	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	UniProtKB/TrEMBL
Pfam	MitMem_reg	UniProtKB/TrEMBL
	Mov34	UniProtKB/TrEMBL
PhenoGen	Psmd7	PhenoGen
PROSITE	MPN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014097	RatGTEx
SMART	JAB_MPN	UniProtKB/TrEMBL
UniProt	A0A8I5ZM79	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GIQ0_RAT	UniProtKB/TrEMBL
	A0ABK0LA22_RAT	UniProtKB/TrEMBL
	A6IZ06	ENTREZGENE, UniProtKB/TrEMBL
	D4AEH3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-19	Psmd7	proteasome 26S subunit, non-ATPase 7	Psmd7	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Psmd7	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	Psmd7_predicted	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Psmd7_predicted	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)