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Gene: Cdh7 (cadherin 7) Rattus norvegicus

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Symbol:

Cdh7

Name:

cadherin 7

RGD ID:

1306856

Description:

Predicted to enable beta-catenin binding activity and cadherin binding activity. Predicted to be involved in several processes, including calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell-cell adhesion mediated by cadherin; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Orthologous to human CDH7 (cadherin 7); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cad7; cadherin 7, type 2; cadherin-7; Cadherin7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH7 (cadherin 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cdh7 (cadherin 7, type 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDH7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdh7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDH7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cdh7 (cadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CDH7 (cadherin 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdh7 (cadherin 7, type 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdh7a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdh7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	shg	Alliance	DIOPT (Ensembl Compara\|InParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	27,186,223 - 27,336,076 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	27,187,257 - 27,336,023 (+)	Ensembl				GRCr8
mRatBN7.2	13	26,672,058 - 26,821,571 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	26,672,484 - 26,819,846 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	27,026,414 - 27,166,627 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	28,310,876 - 28,451,099 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	26,983,235 - 27,119,003 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	31,081,064 - 31,228,884 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	31,081,804 - 31,231,213 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	36,218,960 - 36,368,374 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	16,884,417 - 17,020,846 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	26,435,771 - 26,572,149 (+)	NCBI		Celera
RGSC_v3.1	13	16,871,885 - 17,009,083 (+)	NCBI
Cytogenetic Map	13	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amosite asbestos (ISO)

bazedoxifene (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

choline (ISO)

crocidolite asbestos (ISO)

deguelin (ISO)

diazinon (ISO)

dorsomorphin (ISO)

folic acid (ISO)

ketamine (EXP)

L-methionine (ISO)

lead diacetate (EXP)

maneb (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

okadaic acid (ISO)

p-chloromercuribenzoic acid (ISO)

paraquat (ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IBA)

calcium-dependent cell-cell adhesion (IBA)

cell adhesion (IEA)

cell migration (IBA)

cell morphogenesis (IBA)

cell-cell adhesion (IEA)

cell-cell adhesion mediated by cadherin (IBA)

cell-cell junction assembly (IBA)

homophilic cell-cell adhesion (IEA)

Cellular Component

adherens junction (IBA)

catenin complex (IBA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

beta-catenin binding (IBA)

cadherin binding (IBA)

calcium ion binding (IEA)

metal ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18801203

Genomics

Comparative Map Data

Cdh7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	27,186,223 - 27,336,076 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	27,187,257 - 27,336,023 (+)	Ensembl				GRCr8
mRatBN7.2	13	26,672,058 - 26,821,571 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	26,672,484 - 26,819,846 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	27,026,414 - 27,166,627 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	28,310,876 - 28,451,099 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	26,983,235 - 27,119,003 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	31,081,064 - 31,228,884 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	31,081,804 - 31,231,213 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	36,218,960 - 36,368,374 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	16,884,417 - 17,020,846 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	26,435,771 - 26,572,149 (+)	NCBI		Celera
RGSC_v3.1	13	16,871,885 - 17,009,083 (+)	NCBI
Cytogenetic Map	13	q11	NCBI

CDH7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	65,750,252 - 65,890,337 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	65,750,252 - 65,890,337 (+)	Ensembl			hg38	GRCh38
GRCh37	18	63,417,488 - 63,557,573 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	61,568,468 - 61,699,155 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	18	61,568,467 - 61,699,155	NCBI
Celera	18	60,138,894 - 60,269,263 (+)	NCBI		Celera
Cytogenetic Map	18	q22.1	NCBI
HuRef	18	60,120,344 - 60,250,758 (+)	NCBI		HuRef
CHM1_1	18	63,413,070 - 63,543,109 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	18	65,956,460 - 66,096,655 (+)	NCBI		T2T-CHM13v2.0

Cdh7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	109,909,967 - 110,073,002 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	109,910,161 - 110,067,887 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	109,982,237 - 110,145,272 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	109,982,431 - 110,140,157 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	111,880,314 - 112,035,578 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	111,811,284 - 111,966,548 (+)	NCBI		MGSCv36	mm8
Celera	1	112,730,070 - 112,891,174 (+)	NCBI		Celera
Cytogenetic Map	1	E2.1	NCBI
cM Map	1	50.73	NCBI

Cdh7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	49,444,814 - 49,562,803 (+)	Ensembl
ChiLan1.0	NW_004955402	49,444,814 - 49,568,653 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDH7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	83,258,753 - 83,401,432 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	68,951,362 - 69,094,046 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	59,104,931 - 59,244,999 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	62,413,667 - 62,546,295 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	62,413,715 - 62,543,844 (+)	Ensembl			panPan2	panpan1.1

CDH7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	11,699,505 - 11,824,489 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	11,706,673 - 11,824,578 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	12,724,197 - 12,849,596 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	11,551,512 - 11,676,795 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	11,558,649 - 11,677,951 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	11,581,912 - 11,707,059 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	11,525,142 - 11,649,944 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	11,768,853 - 11,894,341 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdh7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	24,927,755 - 25,054,446 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936497	168,265 - 293,236 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	156,295,434 - 156,435,822 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	156,295,885 - 156,436,375 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	173,581,771 - 173,665,159 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	13,867,659 - 14,009,754 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	13,870,360 - 13,989,936 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666060	11,781,146 - 11,883,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdh7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624792	11,849,046 - 11,958,461 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624792	11,836,034 - 11,963,545 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cdh7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	88,204,987 - 88,299,464 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cdh7
1401 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	18
Count of miRNA genes:	18
Interacting mature miRNAs:	18
Transcripts:	ENSRNOT00000041413
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2317027	Aia22	Adjuvant induced arthritis QTL 22	2.29		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	13	1	34785618	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
2317034	Aia9	Adjuvant induced arthritis QTL 9	4.62		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12285517	34884386	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2303030	Bp327	Blood pressure QTL 327			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	43736554	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2317044	Aia23	Adjuvant induced arthritis QTL 23	2.3		joint integrity trait (VT:0010548)	ankle joint diameter (CMO:0002148)	13	12285517	34884386	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
631672	Iddm12	Insulin dependent diabetes mellitus QTL 12	2.2	0.0032	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	6002008	37088115	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
738036	Lnnr4	Liver neoplastic nodule remodeling QTL 4	3.64		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	1	34785618	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
4	4	41	155	35	26	5	25	5	6	139	86	3	132	40	65	21	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB121031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC096082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041413 ⟹ ENSRNOP00000049491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	27,187,257 - 27,336,023 (+)	Ensembl
mRatBN7.2 Ensembl	13	26,672,484 - 26,819,846 (+)	Ensembl
Rnor_6.0 Ensembl	13	31,081,804 - 31,231,213 (+)	Ensembl

RefSeq Acc Id:

NM_001012737 ⟹ NP_001012755

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	27,197,582 - 27,334,344 (+)	NCBI
mRatBN7.2	13	26,683,081 - 26,819,846 (+)	NCBI
Rnor_6.0	13	31,092,405 - 31,228,088 (+)	NCBI
Rnor_5.0	13	36,218,960 - 36,368,374 (+)	NCBI
RGSC_v3.4	13	16,884,417 - 17,020,846 (+)	RGD
Celera	13	26,435,771 - 26,572,149 (+)	RGD

Sequence:

show sequence

ATGAAGCTGGGCAAAGTGGAGCTGTGCCGTTTTCTACAGCTTATAGCTCTCTTCCTGTGTTTCT
CTGGGATGAATCAAGCTGAGCTGCCAAGGTCCAGATCCAAGCCATACTTCCAGTTAGGAAGGTC
CCGGACCAAGCGCAGCTGGGTTTGGAATCAGTTCTTCGTGCTGGAAGAATACATGGGTTCAGAT
CCCCTCTATGTAGGGAAGCTTCACTCTGATGTTGATAAAGGAGATGGTTTCATCAAGTACATCT
TGTCAGGTGAAGGGGCAAGTTCAATTTTCATTATTGATGAGAACACTGGTGATATCCATGCTAC
TAAGAGACTGGACCGGGAGGAGCAGGCCTATTATACACTCAGAGCCCAAGCTCTGGACAGACTC
ACCAACAAGCCTGTGGAGCCCGAATCAGAATTTGTTATTAAGATTCAGGATATCAACGACAATG
AACCCAAATTTCTAGATGGTCCATACACAGCAGGAGTTCCTGAGATGTCTCCTGTGGGGACTTC
AGTGGTTCAAGTGACAGCAACAGATGCTGATGATCCTACTTATGGCAACAGTGCTCGAGTAGTC
TATAGTATTCTGCAGGGACAGCCATACTTCTCAGTGGAACCAAAGACAGGAGTCATCAAGACTG
CCCTTCCAAACATGGATAGAGAGGCTAAAGACCAGTATTTGCTTGTCATTCAGGCAAAGGATAT
GGTTGGGCAAAATGGCGGATTGTCTGGAACAACTTCAGTTACTGTGACCCTAACTGATGTCAAT
GATAACCCACCTCGCTTTCCACGAAGGTCTTACCAGTATAATGGTCCAGAATCTTTGCCTGTGG
CATCAGTTGTGGCCAGAATTAAAGCTGCAGATGCAGATATAGGAGTCAATGCAGAAATGGAATA
TAAAATAGTGGATGGTGATGGACTGGGCATTTTCAAGATATCTCCTGACAAAGACACACAGGAA
GGAATCATTACAATACAGAAGGAGCTCGATTTTGAAGCCAAAACAAGTTATACACTGCGCATAG
AAGCTGCAAATCGAGATGCTGATCCCCGGTTTCTGAGCTTGGGTCCATTCAGTGACACAACAAC
AGTTAAGATAATTGTGGAAGACGTGGATGAGCCCCCTGTGTTTTCGTCACCCTTGTATCCAATG
GAGGTGTCAGAAGCGACACAGGTGGGGCATATAATTGGCACTGTAGCAGCTCATGACCCAGATT
CTTCCAACAGCCCTGTGAGGTACTCAATTGACAGAAACACAGACCTGGAGAGATATTTCAATAT
TGATGCCAACAGTGGAATTATTACTACTGCCAAATCATTGGATCGAGAGACAAATCCTGTTCAT
AACATTACAGTCCTCGCAATGGAGAGCCAGAATCCATCCCAGGTGGGGAGAGGCTATGTGGCCA
TCACTATACTGGATATTAATGACAATGCTCCCGAGTTTGCCATGGACTATGAAACCACTGTCTG
TGAAAATGCTCAGCCAGGACAGGTTATCCAGAAAATCAGTGCAATAGATAAAGACGAGCCATCC
AATGGACACCAGTTTTACTTCAGCTTAACAACCGATATGGCAAATAACCTTAACTCCTCTTTGA
AAGATAACAAAGACAATACAGCCTCAATACTAACCAGGAGAAATGGCTTCCGCAGACAGGAACA
GTCAGTTTATTATCTGCCGATTTTCATCGTGGACAACGGATCTCCTTCACTAAGCAGTACGAAC
ACACTTACCATCCGTGTCTGCGACTGTGATGCTGATGGCATAGCGCAGACCTGCAATGCAGAGG
CCTACATTCTACCCGCTGGCCTCAGCACTGGGGCCCTGATTGCCATACTGGCCTGTGTCCTGAC
ACTATTGGTGTTGATCCTCCTTATTGTCACTATGAAAAGACGAAAAAAAGAGCCTCTCATTTTT
GATGAGGAGAGGGATATTAGAGAAAACATCGTCAGATATGATGATGAAGGCGGGGGAGAAGAAG
ACACAGAAGCTTTTGATATGGCTGCACTGAGAAACCTCAATGTCGTAAGAGACACCAAAACTCG
GAGAGATGTGACTCCTGAAATTCAGTTTTTGAGTCGACCGACTTTTAAAAACATCCCAGATAAT
GTCATTTTTAGGGAATTTATTTGGGAAAGACTAAAGGAAGCTGATGTGGATCCAGGGGCACCAC
CATATGACTCGCTTCAGACTTATGCATTTGAAGGAAATGGCTCAGTAGCTGAATCTCTCGGTTC
TTTAGATTCTAACAGCTCGAACTCTGATCAGAATTATGACTACCTTAGTGACTGGGGTCCTCGC
TTTAAACGACTGGCTGAAATGTATGGAAATGGGCAAGAGAGTTTGTACTCATAGCCT

hide sequence

RefSeq Acc Id:

XM_017598763 ⟹ XP_017454252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	27,186,223 - 27,336,076 (+)	NCBI
mRatBN7.2	13	26,672,472 - 26,821,571 (+)	NCBI
Rnor_6.0	13	31,082,331 - 31,228,884 (+)	NCBI

Sequence:

show sequence

GCATCCTGCTTCTTTGGAATGCATGTTGGACTTGGACATCTTCGTGGATTCACTTGGCAAAGGG
CTAGTTGCTGGTATTCAGCCTTCCAGCCTTCCAGCGTGGATTAATACAAAAGGACCTTTGCTTT
GAATGGCTTCACGTTTTAGATAATTAACCCTTCGGATTTCTTAGATATCATAGTTCAGGAACTT
ATTACGCCATTCCTTGGCAAGTGCTCTCCAGCACTGGTGACCTCTTCCAGTCCAACACTCTGCA
AATTATTATCTCTGGTCTCCCAGCTGACACACTGCCGGAGGCAAGAGCTACGAAGCCAACTAGA
ACTTTGCCTTTTCTCTTGTCAAGGTTTTTTTCTTACACAGGAAAAAGGAAGAAAAAAAAAAGAT
GAAGCTGGGCAAAGTGGAGCTGTGCCGTTTTCTACAGCTTATAGCTCTCTTCCTGTGTTTCTCT
GGGATGAATCAAGCTGAGCTGCCAAGGTCCAGATCCAAGCCATACTTCCAGTTAGGAAGGTCCC
GGACCAAGCGCAGCTGGGTTTGGAATCAGTTCTTCGTGCTGGAAGAATACATGGGTTCAGATCC
CCTCTATGTAGGGAAGCTTCACTCTGATGTTGATAAAGGAGATGGTTCCATCAAGTACATCTTG
TCAGGTGAAGGGGCAAGTTCAATTTTCATTATTGATGAGAACACTGGTGATATCCATGCTACTA
AGAGACTGGACCGGGAGGAGCAGGCCTATTATACACTCAGAGCCCAAGCTCTGGACAGACTCAC
CAACAAGCCTGTGGAGCCCGAATCAGAATTTGTTATTAAGATTCAGGATATCAACGACAATGAA
CCCAAATTTCTAGATGGTCCATACACAGCAGGAGTTCCTGAGATGTCTCCTGTGGGGACTTCAG
TGGTTCAAGTGACAGCAACAGATGCTGATGATCCTACTTATGGCAACAGTGCTCGAGTAGTCTA
TAGTATTCTGCAGGGACAGCCATACTTCTCAGTGGAACCAAAGACAGGAGTCATCAAGACTGCC
CTTCCAAACATGGATAGAGAGGCTAAAGACCAGTATTTGCTTGTCATTCAGGCAAAGGATATGG
TTGGGCAAAATGGCGGATTGTCTGGAACAACTTCAGTTACTGTGACCCTAACTGATGTCAATGA
TAACCCACCTCGCTTTCCACGAAGATCTTACCAGTATAATGTTCCAGAATCTTTGCCTGTGGCA
TCAGTTGTGGCCAGAATTAAAGCTGCAGATGCAGATATAGGAGTCAATGCAGAAATGGAATATA
AAATAGTGGATGGTGATGGACTGGGCATTTTCAAGATATCTCCTGACAAAGACACACAGGAAGG
AATCATTACAATACAGAAGGAGCTCGATTTTGAAGCCAAAACAAGTTATACACTGCGCATAGAA
GCTGCAAATCGAGATGCTGATCCCCGGTTTCTGAGCTTGGGTCCATTCAGTGACACAACAACAG
TTAAGATAATTGTGGAAGACGTGGATGAGCCCCCTGTGTTTTCGTCACCCTTGTATCCAATGGA
GGTGTCAGAAGCGACACAGGTGGGGCATATAATTGGCACTGTAGCAGCTCATGACCCAGATTCT
TCCAACAGCCCTGTGAGATACTCAATTGACAGAAACACAGACCTGGAGAGATATTTCAATATTG
ATGCCAACAGTGGAATTATTACTACTGCCAAATCATTGGATCGAGAGACAAATCCTGTTCATAA
CATTACAGTCCTCGCAATGGAGAGCCAGAATCCATCCCAGGTGGGGAGAGGCTATGTGGCCATC
ACTATACTGGATATTAATGACAATGCTCCCGAGTTTGCCATGGAGTATGAAACCACTGTCTGTG
AAAATGCTCAGCCAGGACAGGTTATCCAGAAAATCAGTGCAATAGATAAAGACGAGCCATCCAA
TGGACACCAGTTTTACTTCAGCTTAACAACCGATATGGCAAATAACCTTAACTTCTCTTTGAAA
GATAACAAAGACAATACAGCCTCAATACTAACCAGGAGAAATGGCTTCCGCAGACAGGAACAGT
CAGTTTATTATCTGCCGATTTTCATCGTGGACAACGGATCTCCTTCACTAAGCAGTACGAACAC
ACTTACCATCCGTGTCTGCGACTGTGATGCTGATGGCATAGCGCAGACCTGCAATGCAGAGGCC
TACATTCTACCCGCTGGCCTCAGCACTGGGGCCCTGATTGCCATACTGGCCTGTGTCCTGACAC
TATTGGTGTTGATCCTCCTTATTGTCACTATGAAAAGACGAAAAAAAGAGCCTCTCATTTTTGA
TGAGGAGAGGGATATTAGAGAAAACATCGTCAGATATGATGATGAAGGCGGGGGAGAAGAAGAC
ACAGAAGCTTTTGATATGGCTGCACTGAGAAACCTCAATGTCGTAAGAGACACCAAAACTCGGA
GAGATGTGACTCCTGAAATTCAGTTTTTGAGTCGACCGACTTTTAAAAACATCCCAGATAATGT
CATTTTTAGGGAATTTATTTGGGAAAGACTAAAGGAAGCTGATGTGGATCCAGGGGCACCACCA
TATGACTCGCTTCAGACTTATGCATTTGAAGGAAATGGCTCAGTAGCTGAATCTCTCAGTTCTT
TAGATTCTAACAGCTCGAACTCTGATCAGAATTATGACTACCTTAGTGACTGGGGTCCTCGCTT
TAAACGACTGGCTGAAATGTATGGAAATGGCCAAGAGAGTTTGTACTCATAGCCTTGGATCCTA
ATTTGGAATGTACTGAAGAAAAAGGCAGCAGAAAAAAATTCAAAAGGGAAAGAAAAGTGGTAAA
TACTACATATAGTAAACAGGAATTCCACTTGTGGGACAAAAAGAGGTTGTAAATATGTTTCCAT
TTTTAACTGTTAAGGCCTTGTGAAACATTCACTAGGTTATCCAAGGGATTTCACTGACCACAGA
CTCTGATCATTTGTAGTTGTGTTTTTCGTTTGTTTGTTTGTGGTTCCATAAAAAGAAATACTTA
GTAGATCGTGGATAGGTAGCAACTCTCCTATACCTACAAAGGCATCTAACATGCCTGATAAAGT
AATGTCCTGTGTTGTCAGGGAGCCAAAGGCACCTGGCTCTAACTTTCATGATATCCTATGTAAG
AAAAATAGAGTCCAGTGCACCATTCAAAAAGTCCTAGAACTTCTTGCCTATCAAAACTTGGAAG
AATTTAATTTCTACTGGAGATTTTAAGATTGCTATAAAAAGATAGAGTTCAAAAGAATGTTATC
ACTGTTGGCACACAGAAATATTTTATTTATTAATATTTAAAATCTTATAATAACTTCTGTAAGT
GAAAAACAATAAAAATCAATAATTTAATATTAATAAATTAATATAGTCATTGTTTTACCAATAT
ACTATGTGCAGTGTTCCAAGTAAGAAAAAGGTAAATGAGTCTCCAAGTTTAAGTAGTTTTGAAA
CACTAATGTATGTAAGATTTAAATCAGTAGTTGCTGTCTATTTGTTAATTTTTATTATCTTCTA
ATTTGTACAGGAGAATATA

hide sequence

RefSeq Acc Id:

XM_017598764 ⟹ XP_017454253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	27,186,241 - 27,334,966 (+)	NCBI
mRatBN7.2	13	26,672,058 - 26,821,571 (+)	NCBI
Rnor_6.0	13	31,081,374 - 31,228,884 (+)	NCBI

Sequence:

show sequence

TGGGGGTGGGGAGTGAGGAGTAATGATGGCCTTTTTAGTCTCTGCCAAGAGCGGGACCCTAGCA
TTCAATGACCCCCAGGGTCCCCGTGCCCAGCGGAGTGTGTTGTAATTGGAAGAAGAGCAGGCTG
CGGCGGGCTGAGCAGGTGCTGGTCTGCTGCCTCTGTGTCTGCCCCGCGCCCATAGCTGGATCCC
GTGGATCCCCCCAGCCCCCAACTCCCTTGCCAAGTGCGTATTCTTTTAAATGCAAACGCCATGG
TTTCAGATGTCTGACGCCGCCGGCAGGGTAGCCAGGCCCCAGGAACTTATTACGCCATTCCTTG
GCAAGTGCTCTCCAGCACTGGTGACCTCTTCCAGTCCAACACTCTGCAAATTATTATCTCTGGT
CTCCCAGCTGACACACTGCCGGAGGCAAGAGCTACGAAGCCAACTAGAACTTTGCCTTTTCTCT
TGTCAAGGTTTTTTTCTTACACAGGAAAAAGGAAGAAAAAAAAAAGATGAAGCTGGGCAAAGTG
GAGCTGTGCCGTTTTCTACAGCTTATAGCTCTCTTCCTGTGTTTCTCTGGGATGAATCAAGCTG
AGCTGCCAAGGTCCAGATCCAAGCCATACTTCCAGTTAGGAAGGTCCCGGACCAAGCGCAGCTG
GGTTTGGAATCAGTTCTTCGTGCTGGAAGAATACATGGGTTCAGATCCCCTCTATGTAGGGAAG
CTTCACTCTGATGTTGATAAAGGAGATGGTTCCATCAAGTACATCTTGTCAGGTGAAGGGGCAA
GTTCAATTTTCATTATTGATGAGAACACTGGTGATATCCATGCTACTAAGAGACTGGACCGGGA
GGAGCAGGCCTATTATACACTCAGAGCCCAAGCTCTGGACAGACTCACCAACAAGCCTGTGGAG
CCCGAATCAGAATTTGTTATTAAGATTCAGGATATCAACGACAATGAACCCAAATTTCTAGATG
GTCCATACACAGCAGGAGTTCCTGAGATGTCTCCTGTGGGGACTTCAGTGGTTCAAGTGACAGC
AACAGATGCTGATGATCCTACTTATGGCAACAGTGCTCGAGTAGTCTATAGTATTCTGCAGGGA
CAGCCATACTTCTCAGTGGAACCAAAGACAGGAGTCATCAAGACTGCCCTTCCAAACATGGATA
GAGAGGCTAAAGACCAGTATTTGCTTGTCATTCAGGCAAAGGATATGGTTGGGCAAAATGGCGG
ATTGTCTGGAACAACTTCAGTTACTGTGACCCTAACTGATGTCAATGATAACCCACCTCGCTTT
CCACGAAGATCTTACCAGTATAATGTTCCAGAATCTTTGCCTGTGGCATCAGTTGTGGCCAGAA
TTAAAGCTGCAGATGCAGATATAGGAGTCAATGCAGAAATGGAATATAAAATAGTGGATGGTGA
TGGACTGGGCATTTTCAAGATATCTCCTGACAAAGACACACAGGAAGGAATCATTACAATACAG
AAGGAGCTCGATTTTGAAGCCAAAACAAGTTATACACTGCGCATAGAAGCTGCAAATCGAGATG
CTGATCCCCGGTTTCTGAGCTTGGGTCCATTCAGTGACACAACAACAGTTAAGATAATTGTGGA
AGACGTGGATGAGCCCCCTGTGTTTTCGTCACCCTTGTATCCAATGGAGGTGTCAGAAGCGACA
CAGGTGGGGCATATAATTGGCACTGTAGCAGCTCATGACCCAGATTCTTCCAACAGCCCTGTGA
GATACTCAATTGACAGAAACACAGACCTGGAGAGATATTTCAATATTGATGCCAACAGTGGAAT
TATTACTACTGCCAAATCATTGGATCGAGAGACAAATCCTGTTCATAACATTACAGTCCTCGCA
ATGGAGAGCCAGAATCCATCCCAGGTGGGGAGAGGCTATGTGGCCATCACTATACTGGATATTA
ATGACAATGCTCCCGAGTTTGCCATGGAGTATGAAACCACTGTCTGTGAAAATGCTCAGCCAGG
ACAGGTTATCCAGAAAATCAGTGCAATAGATAAAGACGAGCCATCCAATGGACACCAGTTTTAC
TTCAGCTTAACAACCGATATGGCAAATAACCTTAACTTCTCTTTGAAAGATAACAAAGACAATA
CAGCCTCAATACTAACCAGGAGAAATGGCTTCCGCAGACAGGAACAGTCAGTTTATTATCTGCC
GATTTTCATCGTGGACAACGGATCTCCTTCACTAAGCAGTACGAACACACTTACCATCCGTGTC
TGCGACTGTGATGCTGATGGCATAGCGCAGACCTGCAATGCAGAGGCCTACATTCTACCCGCTG
GCCTCAGCACTGGGGCCCTGATTGCCATACTGGCCTGTGTCCTGACACTATTGGTGTTGATCCT
CCTTATTGTCACTATGAAAAGACGAAAAAAAGAGCCTCTCATTTTTGATGAGGAGAGGGATATT
AGAGAAAACATCGTCAGATATGATGATGAAGGCGGGGGAGAAGAAGACACAGAAGCTTTTGATA
TGGCTGCACTGAGAAACCTCAATGTCGTAAGAGACACCAAAACTCGGAGAGATGTGACTCCTGA
AATTCAGTTTTTGAGTCGACCGACTTTTAAAAACATCCCAGATAATGTCATTTTTAGGGAATTT
ATTTGGGAAAGACTAAAGGAAGCTGATGTGGATCCAGGGGCACCACCATATGACTCGCTTCAGA
CTTATGCATTTGAAGGAAATGGCTCAGTAGCTGAATCTCTCAGTTCTTTAGATTCTAACAGCTC
GAACTCTGATCAGAATTATGACTACCTTAGTGACTGGGGTCCTCGCTTTAAACGACTGGCTGAA
ATGTATGGAAATGGCCAAGAGAGTTTGTACTCATAGCCTTGGATCCTAATTTGGAATGTACTGA
AGAAAAAGGCAGCAGAAAAAAATTCAAAAGGGAAAGAAAAGTGGTAAATACTACATATAGTAAA
CAGGAATTCCACTTGTGGGACAAAAAGAGGTTGTAAATATGTTTCCATTTTTAACTGTTAAGGC
CTTGTGAAACATTCACTAGGTTATCCAAGGGATTTCACTGACCACAGACTCTGATCATTTGTAG
TTGTGTTTTTCGTTTGTTTGTTTGTGGTTCCATAAAAAGAAATACTTAGTAGATCGTGGATAGG
TAGCAACTCTCCTATACCTACAAAGGCATCTAACATGCCTGATAAAGTAATGTCCTGTGTTGTC
AGGGAGCCAAAGGCACCTGGCTCTAACTTTCATGATATCCTATGTAAGAAAAATAGAGTCCAGT
GCACCATTCAAAAAGTCCTAGAACTTCTTGCCTATCAAAACTTGGAAGAATTTAATTTCTACTG
GAGATTTTAAGATTGCTATAAAAAGATAGAGTTCAAAAGAATGTTATCACTGTTGGCACACAGA
AATATTTTATTTATTAATATTTAAAATCTTATAATAACTTCTGTAAGTGAAAAACAATAAAAAT
CAATAATTTAATATTAATAAATTAATATAGTCATTGTTTTACCAATATACTATGTGCAGTGTTC
CAAGTAAGAAAAAGGTAAATGAGTCTCCAAGTTTAAGTAGTTTTGAAACACTAATGTATGTAAG
ATTTAAATCAGTAGTTGCTGTCTATTTGTTAATTTTTATTATCTTCTAATTTGTACAGGAGAAT
ATA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012755	(Get FASTA)	NCBI Sequence Viewer
	XP_017454252	(Get FASTA)	NCBI Sequence Viewer
	XP_017454253	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAD90595	(Get FASTA)	NCBI Sequence Viewer
	EDL91762	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000049491
GenBank Protein	Q5DWV2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001012755 ⟸ NM_001012737
- Peptide Label:	precursor
- UniProtKB:	Q5DWV2 (UniProtKB/Swiss-Prot), G3V9J2 (UniProtKB/TrEMBL), A6JSW4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLGKVELCRFLQLIALFLCFSGMNQAELPRSRSKPYFQLGRSRTKRSWVWNQFFVLEEYMGSD PLYVGKLHSDVDKGDGFIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRL TNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVV YSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVN DNPPRFPRRSYQYNGPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGLGIFKISPDKDTQE GIITIQKELDFEAKTSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPM EVSEATQVGHIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGIITTAKSLDRETNPVH NITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAIDKDEPS NGHQFYFSLTTDMANNLNSSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDNGSPSLSSTN TLTIRVCDCDADGIAQTCNAEAYILPAGLSTGALIAILACVLTLLVLILLIVTMKRRKKEPLIF DEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVVRDTKTRRDVTPEIQFLSRPTFKNIPDN VIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLGSLDSNSSNSDQNYDYLSDWGPR FKRLAEMYGNGQESLYS hide sequence

RefSeq Acc Id:	XP_017454253 ⟸ XM_017598764
- Peptide Label:	isoform X1
- UniProtKB:	Q5DWV2 (UniProtKB/Swiss-Prot), G3V9J2 (UniProtKB/TrEMBL), A6JSW4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLGKVELCRFLQLIALFLCFSGMNQAELPRSRSKPYFQLGRSRTKRSWVWNQFFVLEEYMGSD PLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRL TNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVV YSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVN DNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGLGIFKISPDKDTQE GIITIQKELDFEAKTSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPM EVSEATQVGHIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGIITTAKSLDRETNPVH NITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMEYETTVCENAQPGQVIQKISAIDKDEPS NGHQFYFSLTTDMANNLNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDNGSPSLSSTN TLTIRVCDCDADGIAQTCNAEAYILPAGLSTGALIAILACVLTLLVLILLIVTMKRRKKEPLIF DEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVVRDTKTRRDVTPEIQFLSRPTFKNIPDN VIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLSSLDSNSSNSDQNYDYLSDWGPR FKRLAEMYGNGQESLYS hide sequence

RefSeq Acc Id:

XP_017454252 ⟸ XM_017598763

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKLGKVELCRFLQLIALFLCFSGMNQAELPRSRSKPYFQLGRSRTKRSWVWNQFFVLEEYMGSD
PLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRL
TNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVV
YSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVN
DNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGLGIFKISPDKDTQE
GIITIQKELDFEAKTSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPM
EVSEATQVGHIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGIITTAKSLDRETNPVH
NITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMEYETTVCENAQPGQVIQKISAIDKDEPS
NGHQFYFSLTTDMANNLNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDNGSPSLSSTN
TLTIRVCDCDADGIAQTCNAEAYILPAGLSTGALIAILACVLTLLVLILLIVTMKRRKKEPLIF
DEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVVRDTKTRRDVTPEIQFLSRPTFKNIPDN
VIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLSSLDSNSSNSDQNYDYLSDWGPR
FKRLAEMYGNGQESLYS

hide sequence

Ensembl Acc Id:

ENSRNOP00000049491 ⟸ ENSRNOT00000041413

Protein Domains

Cadherin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5DWV2-F1-model_v2	AlphaFold	Q5DWV2	1-785	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306856	AgrOrtholog
BioCyc Gene	G2FUF-18562	BioCyc
Ensembl Genes	ENSRNOG00000032490	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000041413	ENTREZGENE
Gene3D-CATH	4.10.900.10	UniProtKB/Swiss-Prot
	Cadherins	UniProtKB/Swiss-Prot
InterPro	Cadherin	UniProtKB/Swiss-Prot
	Cadherin-like_dom	UniProtKB/Swiss-Prot
	Cadherin-like_sf	UniProtKB/Swiss-Prot
	Cadherin_CS	UniProtKB/Swiss-Prot
	Cadherin_cytoplasmic-dom	UniProtKB/Swiss-Prot
	Catenin_binding_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:29162	UniProtKB/Swiss-Prot
NCBI Gene	29162	ENTREZGENE
PANTHER	CADHERIN-7	UniProtKB/Swiss-Prot
	PTHR24027	UniProtKB/Swiss-Prot
Pfam	Cadherin	UniProtKB/Swiss-Prot
	Cadherin_C	UniProtKB/Swiss-Prot
PhenoGen	Cdh7	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot
PROSITE	CADHERIN_1	UniProtKB/Swiss-Prot
	CADHERIN_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000032490	RatGTEx
SMART	SM00112	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49313	UniProtKB/Swiss-Prot
UniProt	A6JSW4	ENTREZGENE, UniProtKB/TrEMBL
	CADH7_RAT	UniProtKB/Swiss-Prot
	G3V9J2	ENTREZGENE, UniProtKB/TrEMBL
	Q5DWV2	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-20	Cdh7	cadherin 7	Cdh7	cadherin 7, type 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Cdh7	cadherin 7, type 2	Cdh7_predicted	cadherin 7, type 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Cdh7_predicted	cadherin 7, type 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD