Slc66a3 (solute carrier family 66 member 3) - Rat Genome Database

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Gene: Slc66a3 (solute carrier family 66 member 3) Rattus norvegicus
Analyze
Symbol: Slc66a3
Name: solute carrier family 66 member 3
RGD ID: 1306818
Description: Predicted to be located in membrane. Orthologous to human SLC66A3 (solute carrier family 66 member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC298906; PQ loop repeat containing 3; PQ-loop repeat-containing protein 3; Pqlc3; RGD1306818; similar to RIKEN cDNA E030024M05
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,503,541 - 45,515,293 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl645,503,545 - 45,515,117 (-)EnsemblGRCr8
mRatBN7.2639,774,801 - 39,786,554 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl639,774,808 - 39,786,303 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx640,107,352 - 40,118,873 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,422,062 - 40,433,583 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0639,855,353 - 39,866,872 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,290,678 - 42,302,451 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,290,680 - 42,302,254 (-)Ensemblrn6Rnor6.0
Rnor_5.0652,010,002 - 52,021,578 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4640,676,562 - 40,688,138 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera639,082,848 - 39,094,377 (-)NCBICelera
RGSC_v3.1640,679,514 - 40,691,234 (-)NCBI
Cytogenetic Map6q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
fenamidone  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
indometacin  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
nickel sulfate  (ISO)
p-toluidine  (EXP)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Slc66a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,503,541 - 45,515,293 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl645,503,545 - 45,515,117 (-)EnsemblGRCr8
mRatBN7.2639,774,801 - 39,786,554 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl639,774,808 - 39,786,303 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx640,107,352 - 40,118,873 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,422,062 - 40,433,583 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0639,855,353 - 39,866,872 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,290,678 - 42,302,451 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,290,680 - 42,302,254 (-)Ensemblrn6Rnor6.0
Rnor_5.0652,010,002 - 52,021,578 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4640,676,562 - 40,688,138 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera639,082,848 - 39,094,377 (-)NCBICelera
RGSC_v3.1640,679,514 - 40,691,234 (-)NCBI
Cytogenetic Map6q16NCBI
SLC66A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38211,155,467 - 11,178,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl211,155,198 - 11,178,870 (+)Ensemblhg38GRCh38
GRCh37211,295,593 - 11,318,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36211,212,991 - 11,236,451 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34211,246,137 - 11,269,594NCBI
Celera211,211,350 - 11,234,837 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef211,145,269 - 11,168,741 (+)NCBIHuRef
CHM1_1211,225,056 - 11,248,516 (+)NCBICHM1_1
T2T-CHM13v2.0211,187,869 - 11,211,256 (+)NCBIT2T-CHM13v2.0
Slc66a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,038,649 - 17,050,385 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,038,649 - 17,050,409 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381216,988,648 - 17,000,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1216,988,648 - 17,000,408 (-)Ensemblmm10GRCm38
MGSCv371216,995,454 - 17,006,924 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361217,014,128 - 17,025,536 (-)NCBIMGSCv36mm8
Celera1217,311,881 - 17,323,320 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.04NCBI
Slc66a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,848,501 - 5,855,425 (+)Ensembl
ChiLan1.0NW_0049554875,848,723 - 5,855,425 (+)NCBIChiLan1.0ChiLan1.0
SLC66A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,348,675 - 115,371,081 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,352,646 - 115,375,036 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A11,144,034 - 11,166,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A11,293,960 - 11,315,854 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A11,293,960 - 11,315,854 (+)EnsemblpanPan2panpan1.1
SLC66A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,915,769 - 7,930,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,915,696 - 7,929,585 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha177,847,797 - 7,862,441 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0178,018,827 - 8,033,707 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl178,018,812 - 8,033,924 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,903,953 - 7,918,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,907,272 - 7,921,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,927,344 - 7,942,219 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc66a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,370,835 - 52,386,778 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365327,127,582 - 7,141,950 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365327,127,656 - 7,141,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC66A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3125,494,793 - 125,507,239 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13125,494,793 - 125,507,235 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,207,369 - 134,219,565 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC66A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,446,268 - 96,469,485 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,447,306 - 96,469,441 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604515,812,667 - 15,834,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc66a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,592,973 - 4,599,232 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248654,592,697 - 4,599,213 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc66a3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1736,799,110 - 36,810,914 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc66a3
35 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:458
Count of miRNA genes:235
Interacting mature miRNAs:273
Transcripts:ENSRNOT00000007071
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat

Markers in Region
RH130048  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2639,774,857 - 39,775,040 (+)MAPPERmRatBN7.2
Rnor_6.0642,290,735 - 42,290,917NCBIRnor6.0
Rnor_5.0652,010,059 - 52,010,241UniSTSRnor5.0
RGSC_v3.4640,676,619 - 40,676,801UniSTSRGSC3.4
Celera639,082,905 - 39,083,087UniSTS
RH 3.4 Map6181.0UniSTS
Cytogenetic Map6q15UniSTS
RH131960  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2639,777,782 - 39,777,984 (+)MAPPERmRatBN7.2
Rnor_6.0642,293,660 - 42,293,861NCBIRnor6.0
Rnor_5.0652,012,984 - 52,013,185UniSTSRnor5.0
RGSC_v3.4640,679,544 - 40,679,745UniSTSRGSC3.4
Celera639,085,830 - 39,086,031UniSTS
RH 3.4 Map6181.2UniSTS
Cytogenetic Map6q15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 355 192 11 142 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007071   ⟹   ENSRNOP00000007071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl645,503,545 - 45,515,117 (-)Ensembl
mRatBN7.2 Ensembl639,774,813 - 39,786,303 (-)Ensembl
Rnor_6.0 Ensembl642,290,680 - 42,302,254 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101737   ⟹   ENSRNOP00000085412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl645,506,702 - 45,515,117 (-)Ensembl
mRatBN7.2 Ensembl639,774,816 - 39,786,279 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108174   ⟹   ENSRNOP00000077550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl639,774,817 - 39,786,279 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109304   ⟹   ENSRNOP00000084445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl645,506,702 - 45,515,117 (-)Ensembl
mRatBN7.2 Ensembl639,774,808 - 39,786,265 (-)Ensembl
RefSeq Acc Id: NM_001034952   ⟹   NP_001030124
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8645,503,541 - 45,515,117 (-)NCBI
mRatBN7.2639,774,801 - 39,786,379 (-)NCBI
Rnor_6.0642,290,678 - 42,302,254 (-)NCBI
Rnor_5.0652,010,002 - 52,021,578 (-)NCBI
RGSC_v3.4640,676,562 - 40,688,138 (-)RGD
Celera639,082,848 - 39,094,377 (-)RGD
Sequence:
RefSeq Acc Id: XM_008764587   ⟹   XP_008762809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8645,504,673 - 45,515,287 (-)NCBI
mRatBN7.2639,774,801 - 39,786,547 (-)NCBI
Rnor_6.0642,291,767 - 42,302,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111947   ⟹   XP_038967875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8645,506,780 - 45,515,293 (-)NCBI
mRatBN7.2639,778,064 - 39,786,554 (-)NCBI
RefSeq Acc Id: XM_039111949   ⟹   XP_038967877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8645,503,546 - 45,515,291 (-)NCBI
mRatBN7.2639,774,806 - 39,786,553 (-)NCBI
RefSeq Acc Id: NP_001030124   ⟸   NM_001034952
- Peptide Label: precursor
- UniProtKB: G3V6N5 (UniProtKB/TrEMBL),   A6HAT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762809   ⟸   XM_008764587
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A368 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007071   ⟸   ENSRNOT00000007071
RefSeq Acc Id: XP_038967877   ⟸   XM_039111949
- Peptide Label: isoform X3
- UniProtKB: A0A8I5YCE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967875   ⟸   XM_039111947
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZZ26 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084445   ⟸   ENSRNOT00000109304
Ensembl Acc Id: ENSRNOP00000085412   ⟸   ENSRNOT00000101737
Ensembl Acc Id: ENSRNOP00000077550   ⟸   ENSRNOT00000108174

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V6N5-F1-model_v2 AlphaFold G3V6N5 1-202 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694507
Promoter ID:EPDNEW_R5030
Type:initiation region
Name:Pqlc3_1
Description:PQ loop repeat containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0642,302,100 - 42,302,160EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306818 AgrOrtholog
BioCyc Gene G2FUF-38061 BioCyc
Ensembl Genes ENSRNOG00000005126 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007071 ENTREZGENE
  ENSRNOT00000007071.8 UniProtKB/TrEMBL
  ENSRNOT00000101737 ENTREZGENE
  ENSRNOT00000101737.2 UniProtKB/TrEMBL
  ENSRNOT00000109304 ENTREZGENE
  ENSRNOT00000109304.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.290 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7108131 IMAGE-MGC_LOAD
InterPro CTNS UniProtKB/TrEMBL
  MannP-dilichol_defect-1 UniProtKB/TrEMBL
KEGG Report rno:298906 UniProtKB/TrEMBL
MGC_CLONE MGC:93745 IMAGE-MGC_LOAD
NCBI Gene 298906 ENTREZGENE
PANTHER PTHR12226 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 66 MEMBER 3 UniProtKB/TrEMBL
Pfam PQ-loop UniProtKB/TrEMBL
PhenoGen Slc66a3 PhenoGen
PIRSF MannP-dilichol_defect-1p UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005126 RatGTEx
UniProt A0A8I5YCE9 ENTREZGENE
  A0A8I5ZZ26 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A368 ENTREZGENE, UniProtKB/TrEMBL
  A6HAT8 ENTREZGENE, UniProtKB/TrEMBL
  G3V6N5 ENTREZGENE, UniProtKB/TrEMBL
  Q66HG2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-09 Slc66a3  solute carrier family 66 member 3  Pqlc3  PQ loop repeat containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Pqlc3  PQ loop repeat containing 3  RGD1306818  similar to RIKEN cDNA E030024M05  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1306818  similar to RIKEN cDNA E030024M05  RGD1306818_predicted  similar to RIKEN cDNA E030024M05 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306818_predicted  similar to RIKEN cDNA E030024M05 (predicted)  LOC298906_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC298906_predicted  similar to RIKEN cDNA E030024M05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL