Taco1 (translational activator of cytochrome c oxidase I)

Gene: Taco1 (translational activator of cytochrome c oxidase I) Rattus norvegicus

Analyze

Symbol:

Taco1

Name:

translational activator of cytochrome c oxidase I

RGD ID:

1306784

Description:

Predicted to enable mRNA binding activity; mitochondrial ribosome binding activity; and rRNA binding activity. Predicted to act upstream of or within mitochondrial cytochrome c oxidase assembly; motor learning; and regulation of mitochondrial translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex IV deficiency nuclear type 8. Orthologous to human TACO1 (translational activator of cytochrome c oxidase I); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ccdc44; coiled-coil domain containing 44; coiled-coil domain-containing protein 44; LOC360645; RGD1306784; similar to clone HQ0477 PRO0477p; translational activator of cytochrome c oxidase 1; translational activator of mitochondrially encoded cytochrome c oxidase I; translational activator of mitochondrially-encoded cytochrome c oxidase I

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	91,502,395 - 91,510,299 (+)	NCBI		GRCr8
mRatBN7.2	10	91,002,590 - 91,010,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	91,002,640 - 91,012,042 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	96,057,245 - 96,065,615 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	95,520,416 - 95,528,786 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	90,931,396 - 90,939,468 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	94,260,148 - 94,268,276 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	94,260,197 - 94,268,222 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	94,011,140 - 94,018,947 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	95,461,947 - 95,469,905 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	95,476,365 - 95,483,981 (+)	NCBI
Celera	10	89,680,244 - 89,687,523 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cytochrome-c oxidase deficiency disease (ISO)

genetic disease (ISO)

Leigh disease (ISO)

mitochondrial complex IV deficiency nuclear type 1 (ISO)

mitochondrial complex IV deficiency nuclear type 8 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3',5'-cyclic UMP (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

enzyme inhibitor (ISO)

fenthion (ISO)

folic acid (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

paracetamol (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial cytochrome c oxidase assembly (IEA,ISO)

motor learning (IEA,ISO)

regulation of mitochondrial translation (IEA,ISO)

Cellular Component

cytosol (IEA)

mitochondrion (IBA,IEA,ISO)

Molecular Function

mitochondrial ribosome binding (IEA,ISO)

mRNA binding (IEA,ISO)

protein binding (ISO)

rRNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14651853	PMID:18614015	PMID:27319982

Genomics

Comparative Map Data

Taco1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	91,502,395 - 91,510,299 (+)	NCBI		GRCr8
mRatBN7.2	10	91,002,590 - 91,010,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	91,002,640 - 91,012,042 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	96,057,245 - 96,065,615 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	95,520,416 - 95,528,786 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	90,931,396 - 90,939,468 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	94,260,148 - 94,268,276 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	94,260,197 - 94,268,222 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	94,011,140 - 94,018,947 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	95,461,947 - 95,469,905 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	95,476,365 - 95,483,981 (+)	NCBI
Celera	10	89,680,244 - 89,687,523 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

TACO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	63,600,895 - 63,608,365 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	63,600,882 - 63,608,365 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	61,678,254 - 61,685,725 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	59,031,975 - 59,039,457 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	56,066,314 - 56,073,847 (+)	NCBI		Celera
Cytogenetic Map	17	q23.3	NCBI
HuRef	17	57,046,182 - 57,053,675 (+)	NCBI		HuRef
CHM1_1	17	61,742,634 - 61,750,126 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	64,471,513 - 64,478,982 (+)	NCBI		T2T-CHM13v2.0

Taco1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	105,956,885 - 105,964,861 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	105,956,887 - 105,964,438 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	106,066,057 - 106,074,035 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	106,066,061 - 106,073,612 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	105,927,421 - 105,934,926 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	105,882,197 - 105,889,702 (+)	NCBI		MGSCv36	mm8
Celera	11	117,796,584 - 117,804,089 (+)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	68.89	NCBI

LOC102024671
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	8,199,244 - 8,204,577 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	8,198,563 - 8,204,820 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100995944
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	79,772,592 - 79,780,105 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	84,590,067 - 84,597,578 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	57,680,741 - 57,688,235 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	62,827,084 - 62,833,925 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	62,827,083 - 62,833,925 (+)	Ensembl	panpan1.1		panPan2

TACO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	11,598,207 - 11,603,357 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	11,598,416 - 11,602,883 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	12,558,316 - 12,567,076 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	13,261,489 - 13,270,187 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	13,261,498 - 13,266,981 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	12,206,049 - 12,214,801 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	15,317,199 - 15,325,903 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	15,320,106 - 15,328,880 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101970652
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	14,926,190 - 14,933,794 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	4,260,571 - 4,270,038 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	4,260,635 - 4,268,409 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TACO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	15,307,520 - 15,312,723 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	15,308,309 - 15,312,906 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	15,295,166 - 15,299,806 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TACO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	57,681,289 - 57,688,814 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	57,680,423 - 57,688,712 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	28,294,419 - 28,301,952 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101703967
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	1,105,914 - 1,117,222 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	1,106,235 - 1,114,576 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Taco1
43 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	73
Count of miRNA genes:	62
Interacting mature miRNAs:	65
Transcripts:	ENSRNOT00000063973
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	72552416	93995749	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	74372084	94965338	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	94965338	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	78775516	98279596	Rat
631555	Bp134	Blood pressure QTL 134		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	80515287	91230079	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
4889948	Bss91	Bone structure and strength QTL 91	4		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	10	82564856	92369470	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84007272	95933025	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84007272	95933025	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	84022321	93995963	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
2313856	Bp342	Blood pressure QTL 342	4.4	0.0001	life span trait (VT:0005372)	age at time of death (CMO:0001193)	10	87307617	96121100	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat

Markers in Region

BF408338

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	91,003,363 - 91,003,490 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	94,260,922 - 94,261,048	NCBI	Rnor6.0
Rnor_5.0	10	94,011,914 - 94,012,040	UniSTS	Rnor5.0
RGSC_v3.4	10	95,462,721 - 95,462,847	UniSTS	RGSC3.4
Celera	10	89,681,018 - 89,681,144	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		10	24	8	8	8	8	8	7	13	5	2	8
Low	3	33	33	33	11	33		3	67	22	36	9
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000063973 ⟹ ENSRNOP00000061257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	91,002,640 - 91,012,042 (+)	Ensembl
Rnor_6.0 Ensembl	10	94,260,197 - 94,268,222 (+)	Ensembl

RefSeq Acc Id:

NM_001108302 ⟹ NP_001101772

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	91,502,395 - 91,510,299 (+)	NCBI
mRatBN7.2	10	91,002,590 - 91,010,494 (+)	NCBI
Rnor_6.0	10	94,260,148 - 94,268,054 (+)	NCBI
Rnor_5.0	10	94,011,140 - 94,018,947 (+)	NCBI
RGSC_v3.4	10	95,461,947 - 95,469,905 (+)	RGD
Celera	10	89,680,244 - 89,687,523 (+)	RGD

Sequence:

show sequence

GACGGACCAGAGAAAGGAAGTGTACTGCACCATTTAGGGTCTCCGCTTCCGGCTACTGCCGGGT
CACTCAAGGCTGTGTAGCTTCAGGTTTCTGGAGAGTTGTAGAAGCTGTCTGAACATCCAGACCG
GTTTATTGCGGTGCCAGACTAGACAGGCTGATTTTGGCTGCTCCTGTTTGCACCTTGCAGCCCC
TTGTCGAAGCAGATGATGTCTTGGGCTGCCGCCCGCCTGACAGAGACTGCTGCCCGATGCTTTC
GTGCGCGATGCCTCGGTTTCCGCGTGGGTCCTTGGTGCGTCTCCCAGCATGAAAACTCCAGCTA
TGGTGCAGCTCCACACAGGACGCTGCGTGTCAGCGCTGTGGCCTTCGCGGGACACAATAAATGG
TCTAAAGTCCGGCACATCAAAGGCCCCAAGGACATGGAAAGGAGTCGAATCTTCTCTAAACTCA
CTCTCAGTATCCGCCTGGCGGTTAAAGAGGGAGGTCCTAACCCTGAGAACAACAGCAGCCTGGC
CAACATCTTAGAGGTGTGTCGCAGCAAGAATATGCCCAAGTCAACCATTGAGTCAGCACTGAAG
TCAGAGAAAAACAAGGGCATTTATTTGCTGTATGAGGGTCGTGGCCCTGGTGGCTCTTCTCTGC
TCATTGAGGCATTATCGAACAGTGGTCCCAAGTGCCATCTGGAAATTAAATATATCCTGAACAA
GAATGGGGGAATGATGACTGAAGGAGCACGTCACTTCTTTGACAAAAAAGGAGTGGTTGTGGTT
GGAGTAGAGGATAGAGAGAAGAAAGCTGTGAACCTAGAGCGCGCCCTAGAACTGGCCATCGAAG
CAGGAGCTGAGGATGTGAGGGAAGCTGAAGATGAAGAGGAAGAAAAGAACCTTTTCAAATTTAT
TTGTGATGCTTCTTCACTACATCAAGTGAGGAAAAAACTGGACTCCCTGGGCCTGTGTTCTGTA
TCCTGTTCACTGGAGTTTATCCCCCACTCAAAGGTGCAGCTGTCTGAACCTGAGCTGGAGCAGG
CTGTCCACCTCATCCAGGCTCTTAGCAACCATGAGGACGTGATTCACGTTTATGACAATATCGA
ATAACCAGACCTGACTACATGTGTCTCCAGGCTCTTTTCCTAGGCCAGCACGAGCGTCTACAGC
CATCTCAGAGACTGGACAGGTGGGATCCTGTCAGAGACCTGTGCAATGGCTTATGGCCTTGGGA
AAAAGGGACTCTTAGCTCTTGGTATCACAGGGTCATCTGGAATACAAGGTGAGAGTGGCAGGCT
AGTCTGACTGCGATCCCAGGTGACTGGCTCTTGTGAAGAATCTTAAGCGTCCTGTGGTACCGTG
GAGTGGAAAATGACTTCAGTAATAATTGTAGTGGTTTTTGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101772	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66900	(Get FASTA)	NCBI Sequence Viewer
	B2RYT9	(Get FASTA)	NCBI Sequence Viewer
	EDM06355	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061257
	ENSRNOP00000061257.4
	ENSRNOP00055042562
	ENSRNOP00060019208
	ENSRNOP00065046514

RefSeq Acc Id:

NP_001101772 ⟸ NM_001108302

- UniProtKB:

B2RYT9 (UniProtKB/Swiss-Prot), D4A601 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMSWAAARLTETAARCFRARCLGFRVGPWCVSQHENSSYGAAPHRTLRVSAVAFAGHNKWSKVR
HIKGPKDMERSRIFSKLTLSIRLAVKEGGPNPENNSSLANILEVCRSKNMPKSTIESALKSEKN
KGIYLLYEGRGPGGSSLLIEALSNSGPKCHLEIKYILNKNGGMMTEGARHFFDKKGVVVVGVED
REKKAVNLERALELAIEAGAEDVREAEDEEEEKNLFKFICDASSLHQVRKKLDSLGLCSVSCSL
EFIPHSKVQLSEPELEQAVHLIQALSNHEDVIHVYDNIE

hide sequence

RefSeq Acc Id:

ENSRNOP00000061257 ⟸ ENSRNOT00000063973

Protein Domains

TACO1/YebC-like N-terminal TACO1/YebC-like second and third

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYT9-F1-model_v2	AlphaFold	B2RYT9	1-295	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697832

Promoter ID:

EPDNEW_R8357

Type:

multiple initiation site

Name:

Taco1_1

Description:

translational activator of cytochrome c oxidase I

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	94,260,192 - 94,260,252	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306784	AgrOrtholog
BioCyc Gene	G2FUF-22965	BioCyc
Ensembl Genes	ENSRNOG00000008405	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055029781	UniProtKB/Swiss-Prot
	ENSRNOG00060014073	UniProtKB/Swiss-Prot
	ENSRNOG00065032883	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000063973	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000063973.4	UniProtKB/Swiss-Prot
	ENSRNOT00055051620	UniProtKB/Swiss-Prot
	ENSRNOT00060024090	UniProtKB/Swiss-Prot
	ENSRNOT00065056535	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.10.200	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.70.980	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6922142	IMAGE-MGC_LOAD
InterPro	Integrase-like_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TACO1_YebC-like_2nd/3rd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TACO1_YebC_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transcrip_reg_TACO1-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transcrip_reg_TACO1-like_dom3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	YebC-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:360645	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:188861	IMAGE-MGC_LOAD
NCBI Gene	360645	ENTREZGENE
PANTHER	PTHR12532	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSLATIONAL ACTIVATOR OF CYTOCHROME C OXIDASE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	TACO1_YebC_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transcrip_reg	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Taco1	PhenoGen
RatGTEx	ENSRNOG00000008405	RatGTEx
	ENSRNOG00055029781	RatGTEx
	ENSRNOG00060014073	RatGTEx
	ENSRNOG00065032883	RatGTEx
Superfamily-SCOP	SSF75625	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	B2RYT9	ENTREZGENE
	D4A601	ENTREZGENE, UniProtKB/TrEMBL
	TACO1_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-20	Taco1	translational activator of cytochrome c oxidase I	Taco1	translational activator of mitochondrially encoded cytochrome c oxidase I	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-13	Taco1	translational activator of mitochondrially encoded cytochrome c oxidase I	Ccdc44	coiled-coil domain containing 44	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ccdc44	coiled-coil domain containing 44	Ccdc44_predicted	coiled-coil domain containing 44 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ccdc44_predicted	coiled-coil domain containing 44 (predicted)	RGD1306784_predicted	similar to clone HQ0477 PRO0477p (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306784_predicted	similar to clone HQ0477 PRO0477p (predicted)	LOC360645_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360645_predicted	similar to clone HQ0477 PRO0477p (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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