Ube3d (ubiquitin protein ligase E3D) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ube3d (ubiquitin protein ligase E3D) Rattus norvegicus
Analyze
Symbol: Ube3d
Name: ubiquitin protein ligase E3D
RGD ID: 1306773
Description: Predicted to enable several functions, including cyclin binding activity; ribonuclease inhibitor activity; and ubiquitin conjugating enzyme binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be located in cytoplasm. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase E3D; HECT-type E3 ubiquitin transferase E3D; hypothetical LOC315863; LOC315863; MGC124836; RGD1306773; UbcH10 binding protein with a hect-like domain; ubcH10-binding protein with a HECT-like domain; Ube2cbp; ubiquitin-conjugating enzyme E2C binding protein; ubiquitin-conjugating enzyme E2C-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8896,125,609 - 96,293,122 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl895,882,167 - 96,293,078 (-)EnsemblGRCr8
mRatBN7.2887,245,503 - 87,413,104 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl887,245,589 - 87,413,057 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx892,927,512 - 93,094,414 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0891,126,712 - 91,293,614 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0888,960,141 - 89,134,732 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd897,045,762 - 97,213,245 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive899,145,757 - 99,320,175 (-)NCBILyon_Normotensive
Lyon_Hypertensive897,635,018 - 97,809,434 (-)NCBILyon_Hypertensive
F344_StmMcwi889,081,047 - 89,254,214 (-)NCBIF344_StmMcwi
Rnor_6.0893,948,689 - 94,120,477 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl893,948,767 - 94,120,458 (-)Ensemblrn6Rnor6.0
Rnor_5.0893,463,000 - 93,633,611 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4891,537,389 - 91,704,052 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera886,850,461 - 87,016,589 (-)NCBICelera
RGSC_v3.1891,675,636 - 91,726,778 (-)NCBI
Cytogenetic Map8q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytoskeleton  (IEA)
cytosol  (IBA,IEA,ISO)
microtubule  (IEA)
nucleus  (IBA)
ubiquitin ligase complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15749827  


Genomics

Comparative Map Data
Ube3d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8896,125,609 - 96,293,122 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl895,882,167 - 96,293,078 (-)EnsemblGRCr8
mRatBN7.2887,245,503 - 87,413,104 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl887,245,589 - 87,413,057 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx892,927,512 - 93,094,414 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0891,126,712 - 91,293,614 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0888,960,141 - 89,134,732 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd897,045,762 - 97,213,245 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive899,145,757 - 99,320,175 (-)NCBILyon_Normotensive
Lyon_Hypertensive897,635,018 - 97,809,434 (-)NCBILyon_Hypertensive
F344_StmMcwi889,081,047 - 89,254,214 (-)NCBIF344_StmMcwi
Rnor_6.0893,948,689 - 94,120,477 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl893,948,767 - 94,120,458 (-)Ensemblrn6Rnor6.0
Rnor_5.0893,463,000 - 93,633,611 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4891,537,389 - 91,704,052 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera886,850,461 - 87,016,589 (-)NCBICelera
RGSC_v3.1891,675,636 - 91,726,778 (-)NCBI
Cytogenetic Map8q31NCBI
UBE3D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38682,880,802 - 83,065,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl682,892,390 - 83,065,841 (-)Ensemblhg38GRCh38
GRCh37683,602,109 - 83,775,560 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36683,658,905 - 83,832,264 (-)NCBIBuild 36Build 36hg18NCBI36
Celera684,035,429 - 84,208,843 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef680,830,086 - 81,003,588 (-)NCBIHuRef
CHM1_1683,699,816 - 83,873,224 (-)NCBICHM1_1
T2T-CHM13v2.0684,098,732 - 84,288,846 (-)NCBIT2T-CHM13v2.0
Ube3d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39986,189,364 - 86,347,003 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl986,189,359 - 86,347,003 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38986,307,234 - 86,464,976 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl986,307,306 - 86,464,950 (-)Ensemblmm10GRCm38
MGSCv37986,200,841 - 86,358,523 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36986,103,952 - 86,261,668 (-)NCBIMGSCv36mm8
Celera983,374,429 - 83,536,852 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.58NCBI
Ube3d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541110,642,047 - 10,797,612 (-)Ensembl
ChiLan1.0NW_00495541110,642,102 - 10,797,612 (-)NCBIChiLan1.0ChiLan1.0
UBE3D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25102,692,439 - 103,166,887 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16100,886,340 - 101,061,115 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0680,729,751 - 80,962,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1684,062,079 - 84,236,826 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl684,062,079 - 84,236,860 (-)EnsemblpanPan2panpan1.1
UBE3D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11243,264,956 - 43,475,583 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1243,282,372 - 43,476,086 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1243,078,353 - 43,288,980 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01244,032,015 - 44,241,623 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1243,994,228 - 44,241,887 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11243,372,224 - 43,581,804 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01243,320,940 - 43,530,526 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01243,481,894 - 43,691,291 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ube3d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494678,607,940 - 78,752,364 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365107,718,535 - 7,862,998 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365107,718,552 - 7,862,946 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE3D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl183,140,635 - 83,295,785 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1183,140,479 - 83,295,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2193,417,743 - 93,474,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE3D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,558,463 - 7,737,630 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,558,321 - 7,737,485 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040183,768,030 - 183,941,569 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube3d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479911,523,473 - 11,703,079 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479911,523,477 - 11,702,781 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ube3d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1880,446,388 - 80,495,777 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ube3d
1162 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:131
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000014600
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH94569  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2887,337,051 - 87,337,208 (+)MAPPERmRatBN7.2
mRatBN7.25146,686,949 - 146,687,106 (+)MAPPERmRatBN7.2
Rnor_6.0894,041,606 - 94,041,762NCBIRnor6.0
Rnor_6.05152,686,605 - 152,686,761NCBIRnor6.0
Rnor_5.0893,555,446 - 93,555,602UniSTSRnor5.0
Rnor_5.05156,472,203 - 156,472,359UniSTSRnor5.0
Cytogenetic Map8q31UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 89 59 6 352 189 11 140 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014600   ⟹   ENSRNOP00000014600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl896,125,616 - 96,293,078 (-)Ensembl
mRatBN7.2 Ensembl887,245,589 - 87,413,057 (-)Ensembl
Rnor_6.0 Ensembl893,948,767 - 94,120,458 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080195   ⟹   ENSRNOP00000071165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl896,162,613 - 96,293,078 (-)Ensembl
mRatBN7.2 Ensembl887,293,545 - 87,412,990 (-)Ensembl
Rnor_6.0 Ensembl893,949,125 - 94,120,433 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121867   ⟹   ENSRNOP00000106647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl896,183,351 - 96,218,006 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134165   ⟹   ENSRNOP00000110873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl896,125,731 - 96,293,078 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148030   ⟹   ENSRNOP00000111592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl895,882,167 - 96,293,078 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000158425   ⟹   ENSRNOP00000105339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl896,126,100 - 96,292,751 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163675   ⟹   ENSRNOP00000100624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl896,217,035 - 96,218,007 (-)Ensembl
RefSeq Acc Id: NM_001039610   ⟹   NP_001034699
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,125,609 - 96,293,078 (-)NCBI
mRatBN7.2887,245,582 - 87,413,057 (-)NCBI
Dahl_SR_JrHsd897,045,762 - 97,213,245 (-)NCBI
Lyon_Normotensive899,145,757 - 99,320,175 (-)NCBI
Lyon_Hypertensive897,635,018 - 97,809,434 (-)NCBI
F344_StmMcwi889,081,047 - 89,254,214 (-)NCBI
Rnor_6.0893,948,760 - 94,120,458 (-)NCBI
Rnor_5.0893,463,000 - 93,633,611 (-)NCBI
RGSC_v3.4891,537,389 - 91,704,052 (-)RGD
Celera886,850,461 - 87,016,589 (-)RGD
Sequence:
RefSeq Acc Id: NM_001433776   ⟹   NP_001420705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd897,045,762 - 97,213,245 (-)NCBI
Lyon_Normotensive899,145,757 - 99,320,175 (-)NCBI
Lyon_Hypertensive897,635,018 - 97,809,434 (-)NCBI
F344_StmMcwi889,081,047 - 89,254,214 (-)NCBI
RefSeq Acc Id: NM_001433777   ⟹   NP_001420706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd897,045,762 - 97,213,245 (-)NCBI
Lyon_Normotensive899,145,757 - 99,320,175 (-)NCBI
Lyon_Hypertensive897,635,018 - 97,809,434 (-)NCBI
F344_StmMcwi889,081,047 - 89,254,214 (-)NCBI
RefSeq Acc Id: NM_001433778   ⟹   NP_001420707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd897,045,762 - 97,213,245 (-)NCBI
Lyon_Normotensive899,145,757 - 99,320,175 (-)NCBI
Lyon_Hypertensive897,635,018 - 97,809,434 (-)NCBI
F344_StmMcwi889,081,047 - 89,254,214 (-)NCBI
RefSeq Acc Id: XM_006243479   ⟹   XP_006243541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,125,609 - 96,293,117 (-)NCBI
mRatBN7.2887,245,503 - 87,413,099 (-)NCBI
Rnor_6.0893,948,689 - 94,120,477 (-)NCBI
Rnor_5.0893,463,000 - 93,633,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081531   ⟹   XP_038937459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,245,529 - 96,293,121 (-)NCBI
mRatBN7.2887,365,500 - 87,413,103 (-)NCBI
RefSeq Acc Id: XM_039081532   ⟹   XP_038937460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,183,359 - 96,293,121 (-)NCBI
mRatBN7.2887,303,330 - 87,413,103 (-)NCBI
RefSeq Acc Id: XM_063265560   ⟹   XP_063121630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,125,609 - 96,293,120 (-)NCBI
RefSeq Acc Id: XR_001839187
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,125,609 - 96,293,117 (-)NCBI
mRatBN7.2887,245,503 - 87,413,099 (-)NCBI
Rnor_6.0893,948,689 - 94,120,477 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005487831
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,125,609 - 96,293,118 (-)NCBI
mRatBN7.2887,245,503 - 87,413,101 (-)NCBI
RefSeq Acc Id: XR_005487832
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,125,609 - 96,293,118 (-)NCBI
mRatBN7.2887,245,503 - 87,413,101 (-)NCBI
RefSeq Acc Id: XR_005487834
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,125,609 - 96,293,122 (-)NCBI
mRatBN7.2887,245,503 - 87,413,104 (-)NCBI
RefSeq Acc Id: NP_001034699   ⟸   NM_001039610
- UniProtKB: Q3T1H6 (UniProtKB/Swiss-Prot),   A0A0G2JZS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243541   ⟸   XM_006243479
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000071165   ⟸   ENSRNOT00000080195
Ensembl Acc Id: ENSRNOP00000014600   ⟸   ENSRNOT00000014600
RefSeq Acc Id: XP_038937460   ⟸   XM_039081532
- Peptide Label: isoform X3
- UniProtKB: A6I1U0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937459   ⟸   XM_039081531
- Peptide Label: isoform X3
- UniProtKB: A6I1U0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121630   ⟸   XM_063265560
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000110873   ⟸   ENSRNOT00000134165
Ensembl Acc Id: ENSRNOP00000100624   ⟸   ENSRNOT00000163675
Ensembl Acc Id: ENSRNOP00000111592   ⟸   ENSRNOT00000148030
Ensembl Acc Id: ENSRNOP00000106647   ⟸   ENSRNOT00000121867
Ensembl Acc Id: ENSRNOP00000105339   ⟸   ENSRNOT00000158425
RefSeq Acc Id: NP_001420707   ⟸   NM_001433778
RefSeq Acc Id: NP_001420706   ⟸   NM_001433777
RefSeq Acc Id: NP_001420705   ⟸   NM_001433776

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3T1H6-F1-model_v2 AlphaFold Q3T1H6 1-370 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696157
Promoter ID:EPDNEW_R6682
Type:initiation region
Name:Ube3d_1
Description:ubiquitin protein ligase E3D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0894,120,473 - 94,120,533EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306773 AgrOrtholog
BioCyc Gene G2FUF-29644 BioCyc
Ensembl Genes ENSRNOG00000010802 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000014600 ENTREZGENE
  ENSRNOT00000014600.6 UniProtKB/Swiss-Prot
  ENSRNOT00000134165 ENTREZGENE
IMAGE_CLONE IMAGE:7935691 IMAGE-MGC_LOAD
InterPro UBQ-conj_enz_E2-bd_prot UniProtKB/Swiss-Prot
KEGG Report rno:315863 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124836 IMAGE-MGC_LOAD
NCBI Gene 315863 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE E3D UniProtKB/Swiss-Prot
  PTHR31531 UniProtKB/Swiss-Prot
Pfam HECT_2 UniProtKB/Swiss-Prot
PhenoGen Ube3d PhenoGen
RatGTEx ENSRNOG00000010802 RatGTEx
UniProt A0A0G2JZS6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7R4_RAT UniProtKB/TrEMBL
  A0ABK0LII3_RAT UniProtKB/TrEMBL
  A0ABK0LWE9_RAT UniProtKB/TrEMBL
  A0ABK0M0Z2_RAT UniProtKB/TrEMBL
  A0ABK0M3C9_RAT UniProtKB/TrEMBL
  A6I1U0 ENTREZGENE, UniProtKB/TrEMBL
  Q3T1H6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-04 Ube3d  ubiquitin protein ligase E3D  Ube2cbp  ubiquitin-conjugating enzyme E2C binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ube2cbp  ubiquitin-conjugating enzyme E2C binding protein  RGD1306773  hypothetical LOC315863  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1306773  hypothetical LOC315863  RGD1306773_predicted  hypothetical LOC315863 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-20 RGD1306773_predicted  hypothetical LOC315863 (predicted)  LOC315863_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315863_predicted  hypothetical LOC315863 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL