Zswim6 (zinc finger, SWIM-type containing 6) - Rat Genome Database

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Gene: Zswim6 (zinc finger, SWIM-type containing 6) Rattus norvegicus
Analyze
Symbol: Zswim6
Name: zinc finger, SWIM-type containing 6
RGD ID: 1306624
Description: Predicted to be involved in striatal medium spiny neuron differentiation. Predicted to act upstream of or within neuron projection morphogenesis and regulation of neuron migration. Predicted to be located in stereocilium. Predicted to be part of Cul2-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in acromelic frontonasal dysostosis. Orthologous to human ZSWIM6 (zinc finger SWIM-type containing 6); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ab2-064; LOC310062; zinc finger SWIM domain-containing protein 6; zinc finger, SWIM domain containing 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8240,944,617 - 41,112,340 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl240,946,435 - 41,112,519 (-)EnsemblGRCr8
mRatBN7.2239,211,131 - 39,378,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,212,949 - 39,378,924 (-)EnsemblmRatBN7.2
Rnor_6.0238,978,042 - 39,042,886 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl238,979,865 - 39,007,976 (-)Ensemblrn6Rnor6.0
Rnor_5.0258,068,503 - 58,133,311 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4238,939,758 - 38,967,874 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera235,056,022 - 35,120,828 (-)NCBICelera
RGSC_v3.1238,858,310 - 39,031,145 (-)NCBI
Cytogenetic Map2q14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22028030   PMID:25105228   PMID:28433741  


Genomics

Comparative Map Data
Zswim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8240,944,617 - 41,112,340 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl240,946,435 - 41,112,519 (-)EnsemblGRCr8
mRatBN7.2239,211,131 - 39,378,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,212,949 - 39,378,924 (-)EnsemblmRatBN7.2
Rnor_6.0238,978,042 - 39,042,886 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl238,979,865 - 39,007,976 (-)Ensemblrn6Rnor6.0
Rnor_5.0258,068,503 - 58,133,311 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4238,939,758 - 38,967,874 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera235,056,022 - 35,120,828 (-)NCBICelera
RGSC_v3.1238,858,310 - 39,031,145 (-)NCBI
Cytogenetic Map2q14NCBI
ZSWIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38561,332,258 - 61,546,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl561,332,258 - 61,546,172 (+)Ensemblhg38GRCh38
GRCh37560,628,085 - 60,841,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36560,663,758 - 60,877,756 (+)NCBIBuild 36Build 36hg18NCBI36
Celera557,764,647 - 57,838,148 (+)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef557,585,234 - 57,798,491 (+)NCBIHuRef
CHM1_1560,627,755 - 60,841,658 (+)NCBICHM1_1
T2T-CHM13v2.0562,151,402 - 62,365,278 (+)NCBIT2T-CHM13v2.0
Zswim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913107,861,152 - 108,026,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13107,861,152 - 108,026,598 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3813107,724,617 - 107,890,064 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13107,724,617 - 107,890,064 (-)Ensemblmm10GRCm38
MGSCv3713108,514,697 - 108,680,258 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3613108,845,002 - 109,010,895 (-)NCBIMGSCv36mm8
Celera13112,064,904 - 112,230,294 (-)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1359.39NCBI
Zswim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554467,011,836 - 7,188,521 (-)Ensembl
ChiLan1.0NW_0049554467,010,005 - 7,188,763 (-)NCBIChiLan1.0ChiLan1.0
ZSWIM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2452,364,323 - 52,575,529 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1550,517,957 - 50,729,171 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0552,453,762 - 52,664,847 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1554,095,105 - 54,169,700 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl554,096,958 - 54,305,965 (-)EnsemblpanPan2panpan1.1
ZSWIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,954,786 - 48,064,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,991,716 - 48,063,680 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha244,946,333 - 45,140,308 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0248,347,499 - 48,541,916 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl248,347,407 - 48,540,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,417,813 - 45,611,848 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0246,204,341 - 46,398,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0247,056,413 - 47,250,499 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zswim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213198,113,031 - 198,302,567 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364807,051,334 - 7,239,677 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364807,049,499 - 7,239,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSWIM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1640,105,227 - 40,305,197 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11640,105,499 - 40,305,379 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21643,072,339 - 43,305,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZSWIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1457,501,906 - 57,717,375 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660495,992,635 - 6,209,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zswim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248158,482,855 - 8,673,090 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248158,481,026 - 8,673,090 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zswim6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13189,792,743 - 189,985,648 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zswim6
1269 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:52
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000064292
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)23561408353462005Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9685065Swd6Spike wave discharge measurement QTL 65.80.01brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge rate (CMO:0001739)24095742350526673Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
D2Rat12  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8241,107,849 - 41,108,002 (+)Marker Load Pipeline
mRatBN7.2239,374,376 - 39,374,529 (+)MAPPERmRatBN7.2
Rnor_6.0239,141,434 - 39,141,586NCBIRnor6.0
Rnor_5.0258,231,832 - 58,231,984UniSTSRnor5.0
RGSC_v3.4239,101,956 - 39,102,109RGDRGSC3.4
RGSC_v3.4239,101,957 - 39,102,109UniSTSRGSC3.4
Celera235,219,415 - 35,219,567UniSTS
RGSC_v3.1239,022,326 - 39,022,478RGD
RH 3.4 Map2177.4RGD
RH 3.4 Map2177.4UniSTS
RH 2.0 Map254.9RGD
SHRSP x BN Map216.1598RGD
FHH x ACI Map224.1699RGD
Cytogenetic Map2q14UniSTS
D2Got18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,362,913 - 39,363,105 (+)MAPPERmRatBN7.2
Rnor_6.0239,129,825 - 39,130,016NCBIRnor6.0
Rnor_5.0258,220,223 - 58,220,414UniSTSRnor5.0
RGSC_v3.4239,090,543 - 39,090,734RGDRGSC3.4
RGSC_v3.4239,090,543 - 39,090,734UniSTSRGSC3.4
Celera235,207,961 - 35,208,152UniSTS
RGSC_v3.1239,010,912 - 39,011,103RGD
RH 3.4 Map2177.1RGD
RH 3.4 Map2177.1UniSTS
RH 2.0 Map253.8RGD
Cytogenetic Map2q14UniSTS
D2Got22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,276,357 - 39,276,596 (+)MAPPERmRatBN7.2
Rnor_6.0239,043,267 - 39,043,505NCBIRnor6.0
Rnor_5.0258,133,726 - 58,133,964UniSTSRnor5.0
RGSC_v3.4239,003,165 - 39,003,404RGDRGSC3.4
RGSC_v3.4239,003,166 - 39,003,404UniSTSRGSC3.4
Celera235,121,209 - 35,121,447UniSTS
RGSC_v3.1238,923,535 - 38,923,773RGD
RH 3.4 Map2177.1UniSTS
RH 3.4 Map2177.1RGD
RH 2.0 Map253.8RGD
Cytogenetic Map2q14UniSTS
BM387016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,362,737 - 39,362,934 (+)MAPPERmRatBN7.2
Rnor_6.0239,129,649 - 39,129,845NCBIRnor6.0
Rnor_5.0258,220,047 - 58,220,243UniSTSRnor5.0
RGSC_v3.4239,090,367 - 39,090,563UniSTSRGSC3.4
Celera235,207,785 - 35,207,981UniSTS
RH 3.4 Map2177.2UniSTS
Cytogenetic Map2q14UniSTS
RH130599  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,211,251 - 39,211,469 (+)MAPPERmRatBN7.2
Rnor_6.0238,978,163 - 38,978,380NCBIRnor6.0
Rnor_5.0258,068,622 - 58,068,839UniSTSRnor5.0
RGSC_v3.4238,938,061 - 38,938,278UniSTSRGSC3.4
Celera235,056,143 - 35,056,360UniSTS
RH 3.4 Map2178.3UniSTS
Cytogenetic Map2q14UniSTS
RH144303  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,252,855 - 39,253,063 (+)MAPPERmRatBN7.2
Rnor_6.0239,019,766 - 39,019,973NCBIRnor6.0
Rnor_5.0258,110,225 - 58,110,432UniSTSRnor5.0
RGSC_v3.4238,979,665 - 38,979,872UniSTSRGSC3.4
Celera235,097,762 - 35,097,969UniSTS
RH 3.4 Map2177.3UniSTS
Cytogenetic Map2q14UniSTS
BI285441  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,356,717 - 39,356,879 (+)MAPPERmRatBN7.2
Rnor_6.0239,123,630 - 39,123,791NCBIRnor6.0
Rnor_5.0258,214,028 - 58,214,189UniSTSRnor5.0
RGSC_v3.4239,084,348 - 39,084,509UniSTSRGSC3.4
Celera235,201,768 - 35,201,929UniSTS
RH 3.4 Map2176.0UniSTS
Cytogenetic Map2q14UniSTS
BF397496  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,284,899 - 39,285,051 (+)MAPPERmRatBN7.2
Rnor_6.0239,051,804 - 39,051,955NCBIRnor6.0
Rnor_5.0258,142,263 - 58,142,414UniSTSRnor5.0
RGSC_v3.4239,012,607 - 39,012,758UniSTSRGSC3.4
Celera235,129,748 - 35,129,899UniSTS
RH 3.4 Map2176.0UniSTS
Cytogenetic Map2q14UniSTS
AU048211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,349,916 - 39,350,091 (+)MAPPERmRatBN7.2
Rnor_6.0239,116,950 - 39,117,124NCBIRnor6.0
Rnor_5.0258,207,409 - 58,207,583UniSTSRnor5.0
RGSC_v3.4239,077,620 - 39,077,794UniSTSRGSC3.4
Celera235,194,729 - 35,194,911UniSTS
Cytogenetic Map2q14UniSTS
AI008171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,319,895 - 39,320,115 (+)MAPPERmRatBN7.2
Rnor_6.0239,086,932 - 39,087,151NCBIRnor6.0
Rnor_5.0258,177,391 - 58,177,610UniSTSRnor5.0
RGSC_v3.4239,047,602 - 39,047,821UniSTSRGSC3.4
Celera235,164,718 - 35,164,937UniSTS
RH 3.4 Map2175.1UniSTS
Cytogenetic Map2q14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064292   ⟹   ENSRNOP00000059251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl240,946,435 - 41,112,519 (-)Ensembl
mRatBN7.2 Ensembl239,212,949 - 39,378,924 (-)Ensembl
Rnor_6.0 Ensembl238,979,868 - 39,007,976 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078884   ⟹   ENSRNOP00000073696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl240,946,435 - 41,112,519 (-)Ensembl
mRatBN7.2 Ensembl239,212,949 - 39,236,051 (-)Ensembl
Rnor_6.0 Ensembl238,979,865 - 39,003,552 (-)Ensembl
RefSeq Acc Id: XM_039103499   ⟹   XP_038959427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8240,944,617 - 41,112,339 (-)NCBI
mRatBN7.2239,211,131 - 39,378,877 (-)NCBI
RefSeq Acc Id: XM_063282687   ⟹   XP_063138757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8240,944,617 - 41,073,996 (-)NCBI
RefSeq Acc Id: XM_063282688   ⟹   XP_063138758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8240,944,617 - 40,968,640 (-)NCBI
RefSeq Acc Id: XR_010063737
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8240,954,243 - 41,112,340 (-)NCBI
Ensembl Acc Id: ENSRNOP00000059251   ⟸   ENSRNOT00000064292
Ensembl Acc Id: ENSRNOP00000073696   ⟸   ENSRNOT00000078884
RefSeq Acc Id: XP_038959427   ⟸   XM_039103499
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138757   ⟸   XM_063282687
- Peptide Label: isoform X2
- UniProtKB: A6I5J1 (UniProtKB/TrEMBL),   Q7TP63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138758   ⟸   XM_063282688
- Peptide Label: isoform X3
- UniProtKB: F1M5P6 (UniProtKB/TrEMBL),   Q7TP63 (UniProtKB/TrEMBL)
Protein Domains
ZSWIM4-8 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TP63-F1-model_v2 AlphaFold Q7TP63 1-793 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306624 AgrOrtholog
BioCyc Gene G2FUF-54493 BioCyc
Ensembl Genes ENSRNOG00000014528 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064292 ENTREZGENE
  ENSRNOT00000064292.5 UniProtKB/TrEMBL
  ENSRNOT00000078884.3 UniProtKB/TrEMBL
InterPro ZSWIM4-8_C UniProtKB/TrEMBL
NCBI Gene 310062 ENTREZGENE
PANTHER ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 UniProtKB/TrEMBL
  ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam ZSWIM4-8_C UniProtKB/TrEMBL
PhenoGen Zswim6 PhenoGen
RatGTEx ENSRNOG00000014528 RatGTEx
UniProt A0A0G2K667_RAT UniProtKB/TrEMBL
  A6I5J1 ENTREZGENE, UniProtKB/TrEMBL
  F1M5P6 ENTREZGENE, UniProtKB/TrEMBL
  Q7TP63 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-25 Zswim6  zinc finger, SWIM-type containing 6  Zswim6  zinc finger, SWIM domain containing 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Zswim6  zinc finger, SWIM domain containing 6  Zswim6_predicted  zinc finger, SWIM domain containing 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zswim6_predicted  zinc finger, SWIM domain containing 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED