Zswim6 (zinc finger SWIM-type containing 6) - Rat Genome Database

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Gene: Zswim6 (zinc finger SWIM-type containing 6) Ictidomys tridecemlineatus
Analyze
Symbol: Zswim6
Name: zinc finger SWIM-type containing 6
RGD ID: 12473915
Description: ENCODES a protein that exhibits zinc ion binding (inferred); INVOLVED IN neuron projection morphogenesis (ortholog); regulation of neuron migration (ortholog); striatal medium spiny neuron differentiation (ortholog); ASSOCIATED WITH acromelic frontonasal dysostosis (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN stereocilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger SWIM domain-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213198,113,031 - 198,302,567 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364807,051,334 - 7,239,677 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364807,049,499 - 7,239,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zswim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213198,113,031 - 198,302,567 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364807,051,334 - 7,239,677 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364807,049,499 - 7,239,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSWIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38561,332,258 - 61,546,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl561,332,258 - 61,546,172 (+)EnsemblGRCh38hg38GRCh38
GRCh37560,628,085 - 60,841,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36560,663,758 - 60,877,756 (+)NCBINCBI36Build 36hg18NCBI36
Celera557,764,647 - 57,838,148 (+)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef557,585,234 - 57,798,491 (+)NCBIHuRef
CHM1_1560,627,755 - 60,841,658 (+)NCBICHM1_1
T2T-CHM13v2.0562,151,402 - 62,365,278 (+)NCBIT2T-CHM13v2.0
Zswim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913107,861,152 - 108,026,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13107,861,152 - 108,026,598 (-)EnsemblGRCm39 Ensembl
GRCm3813107,724,617 - 107,890,064 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13107,724,617 - 107,890,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713108,514,697 - 108,680,258 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613108,845,002 - 109,010,895 (-)NCBIMGSCv36mm8
Celera13112,064,904 - 112,230,294 (-)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1359.39NCBI
Zswim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8240,944,617 - 41,112,340 (-)NCBIGRCr8
mRatBN7.2239,211,131 - 39,378,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,212,949 - 39,378,924 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0238,978,042 - 39,042,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl238,979,865 - 39,007,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0258,068,503 - 58,133,311 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4238,939,758 - 38,967,874 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1238,858,310 - 39,031,145 (-)NCBI
Celera235,056,022 - 35,120,828 (-)NCBICelera
Cytogenetic Map2q14NCBI
Zswim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554467,011,836 - 7,188,521 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554467,010,005 - 7,188,763 (-)NCBIChiLan1.0ChiLan1.0
ZSWIM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2452,364,323 - 52,575,529 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1550,517,957 - 50,729,171 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0552,453,762 - 52,664,847 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1554,095,105 - 54,169,700 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl554,096,958 - 54,305,965 (-)Ensemblpanpan1.1panPan2
ZSWIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,954,786 - 48,064,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,991,716 - 48,063,680 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,946,333 - 45,140,308 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0248,347,499 - 48,541,916 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl248,347,407 - 48,540,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,417,813 - 45,611,848 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0246,204,341 - 46,398,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0247,056,413 - 47,250,499 (+)NCBIUU_Cfam_GSD_1.0
ZSWIM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1640,105,227 - 40,305,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11640,105,499 - 40,305,379 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21643,072,339 - 43,305,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZSWIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1457,501,906 - 57,717,375 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660495,992,635 - 6,209,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zswim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248158,482,855 - 8,673,090 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248158,481,026 - 8,673,090 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000024938   ⟹   ENSSTOP00000016113
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364807,051,334 - 7,239,677 (-)Ensembl
RefSeq Acc Id: XM_005319587   ⟹   XP_005319644
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213198,113,031 - 198,302,567 (-)NCBI
SpeTri2.0NW_0049364807,049,499 - 7,239,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040273801   ⟹   XP_040129735
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213198,113,031 - 198,193,595 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005319644 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129735 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016113.2
GenBank Protein KAG3266638 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005319644   ⟸   XM_005319587
- UniProtKB: I3MVG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040129735   ⟸   XM_040273801
- UniProtKB: I3MVG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000016113   ⟸   ENSSTOT00000024938
Protein Domains
SWIM-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027393 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024938.2 UniProtKB/TrEMBL
InterPro Znf_SWIM UniProtKB/TrEMBL
  ZSWIM4-8_C UniProtKB/TrEMBL
NCBI Gene Zswim6 ENTREZGENE
PANTHER ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 UniProtKB/TrEMBL
  ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam ZSWIM4-8_C UniProtKB/TrEMBL
PROSITE ZF_SWIM UniProtKB/TrEMBL
UniProt I3MVG8 ENTREZGENE, UniProtKB/TrEMBL