Cdhr4 (cadherin-related family member 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cdhr4 (cadherin-related family member 4) Rattus norvegicus
Analyze
Symbol: Cdhr4
Name: cadherin-related family member 4
RGD ID: 1306603
Description: Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human CDHR4 (cadherin related family member 4); INTERACTS WITH bisphenol A; glycidol; glyphosate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AC128059.5; cadherin-like 29; Cdh29; LOC363144; RGD1306603; similar to RIKEN cDNA D330022A01 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,561,206 - 117,594,456 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8117,561,240 - 117,569,412 (+)EnsemblGRCr8
mRatBN7.28108,682,594 - 108,690,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,682,613 - 108,690,367 (+)EnsemblmRatBN7.2
Rnor_6.08116,771,377 - 116,779,242 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,771,982 - 116,773,868 (+)NCBIrn6Rnor6.0
Rnor_5.08116,125,824 - 116,158,953 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48113,262,207 - 113,269,894 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8107,987,299 - 107,995,164 (+)NCBICelera
RGSC_v3.18113,281,655 - 113,285,203 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cdhr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,561,206 - 117,594,456 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8117,561,240 - 117,569,412 (+)EnsemblGRCr8
mRatBN7.28108,682,594 - 108,690,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,682,613 - 108,690,367 (+)EnsemblmRatBN7.2
Rnor_6.08116,771,377 - 116,779,242 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,771,982 - 116,773,868 (+)NCBIrn6Rnor6.0
Rnor_5.08116,125,824 - 116,158,953 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48113,262,207 - 113,269,894 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8107,987,299 - 107,995,164 (+)NCBICelera
RGSC_v3.18113,281,655 - 113,285,203 (+)NCBI
Cytogenetic Map8q32NCBI
CDHR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,790,732 - 49,802,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,790,732 - 49,799,873 (-)Ensemblhg38GRCh38
GRCh37349,828,165 - 49,837,306 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,810,669 - 49,812,272 (-)NCBIBuild 36Build 36hg18NCBI36
Celera349,793,740 - 49,802,731 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,887,778 - 49,896,303 (-)NCBIHuRef
CHM1_1349,780,227 - 49,789,315 (-)NCBICHM1_1
T2T-CHM13v2.0349,820,605 - 49,832,790 (-)NCBIT2T-CHM13v2.0
Cdhr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,869,656 - 107,876,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,869,696 - 107,876,883 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389107,992,457 - 107,999,681 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,992,497 - 107,999,684 (+)Ensemblmm10GRCm38
MGSCv379107,897,372 - 107,902,011 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369107,897,378 - 107,902,010 (+)NCBIMGSCv36mm8
Celera9107,603,500 - 107,608,139 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Cdhr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,683,570 - 1,690,834 (-)Ensembl
ChiLan1.0NW_0049555321,644,995 - 1,690,897 (-)NCBIChiLan1.0ChiLan1.0
CDHR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,776,987 - 49,788,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,777,898 - 49,793,698 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,722,563 - 49,734,040 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,958,512 - 50,969,623 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,958,548 - 50,967,792 (-)EnsemblpanPan2panpan1.1
CDHR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,473,450 - 39,482,158 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,473,848 - 39,482,144 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2039,391,580 - 39,402,986 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02039,827,611 - 39,838,858 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,816,974 - 39,838,844 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,194,644 - 39,206,069 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,598,879 - 39,610,038 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,878,446 - 39,889,860 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdhr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,639,020 - 64,646,853 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,399,611 - 1,406,876 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,399,611 - 1,406,876 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDHR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,322,034 - 32,329,337 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11332,322,030 - 32,329,530 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,501,281 - 35,509,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDHR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666041155,791,750 - 155,803,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdhr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,707,040 - 3,714,348 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247303,707,115 - 3,714,615 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdhr4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1899,323,176 - 99,330,778 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cdhr4
406 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
D10Chm174  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28108,680,723 - 108,681,193 (+)MAPPERmRatBN7.2
mRatBN7.21067,827,786 - 67,828,025 (+)MAPPERmRatBN7.2
Rnor_6.08116,769,609 - 116,770,078NCBIRnor6.0
Rnor_6.01070,244,687 - 70,244,925NCBIRnor6.0
Rnor_5.01069,875,850 - 69,876,088UniSTSRnor5.0
Rnor_5.08116,123,932 - 116,124,401UniSTSRnor5.0
RGSC_v3.48113,260,260 - 113,260,729UniSTSRGSC3.4
RGSC_v3.41071,110,851 - 71,111,089UniSTSRGSC3.4
Celera1066,772,023 - 66,772,261UniSTS
Celera8107,985,526 - 107,985,995UniSTS
Cytogenetic Map8q32UniSTS
Cytogenetic Map10q26UniSTS
AU017982  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28108,687,636 - 108,687,726 (+)MAPPERmRatBN7.2
Rnor_6.08116,776,521 - 116,776,610NCBIRnor6.0
Rnor_5.08116,130,843 - 116,130,932UniSTSRnor5.0
RGSC_v3.48113,267,171 - 113,267,260UniSTSRGSC3.4
Celera8107,992,443 - 107,992,532UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
6 35 4 32 19 10 34 13 32 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001433382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000050702   ⟹   ENSRNOP00000047710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8117,567,274 - 117,568,966 (+)Ensembl
mRatBN7.2 Ensembl8108,688,664 - 108,690,367 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083240   ⟹   ENSRNOP00000069064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8117,561,254 - 117,568,961 (+)Ensembl
mRatBN7.2 Ensembl8108,682,613 - 108,690,367 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137775   ⟹   ENSRNOP00000106202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8117,561,240 - 117,569,412 (+)Ensembl
RefSeq Acc Id: XM_006243871   ⟹   XP_006243933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,180 (+)NCBI
Rnor_6.08116,771,377 - 116,779,082 (+)NCBI
Rnor_5.08116,125,824 - 116,158,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243872   ⟹   XP_006243934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,358 (+)NCBI
Rnor_6.08116,771,379 - 116,779,242 (+)NCBI
Rnor_5.08116,125,824 - 116,158,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039082828   ⟹   XP_038938756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,182 (+)NCBI
RefSeq Acc Id: XM_039082829   ⟹   XP_038938757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,184 (+)NCBI
RefSeq Acc Id: XM_039082830   ⟹   XP_038938758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,358 (+)NCBI
RefSeq Acc Id: XM_039082831   ⟹   XP_038938759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,358 (+)NCBI
RefSeq Acc Id: XM_039082832   ⟹   XP_038938760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,183 (+)NCBI
RefSeq Acc Id: XM_039082833   ⟹   XP_038938761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,185 (+)NCBI
RefSeq Acc Id: XM_039082834   ⟹   XP_038938762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,358 (+)NCBI
RefSeq Acc Id: XM_039082835   ⟹   XP_038938763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,183 (+)NCBI
RefSeq Acc Id: XM_039082836   ⟹   XP_038938764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
mRatBN7.28108,682,594 - 108,690,186 (+)NCBI
RefSeq Acc Id: XM_039082837   ⟹   XP_038938765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,567,176 (+)NCBI
mRatBN7.28108,682,594 - 108,688,788 (+)NCBI
RefSeq Acc Id: XM_039082838   ⟹   XP_038938766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,563,388 - 117,568,968 (+)NCBI
mRatBN7.28108,684,783 - 108,690,183 (+)NCBI
RefSeq Acc Id: XM_039082839   ⟹   XP_038938767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,566,366 (+)NCBI
mRatBN7.28108,682,594 - 108,687,756 (+)NCBI
RefSeq Acc Id: XM_063266458   ⟹   XP_063122528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,594,456 (+)NCBI
RefSeq Acc Id: XM_063266460   ⟹   XP_063122530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,594,456 (+)NCBI
RefSeq Acc Id: XM_063266461   ⟹   XP_063122531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,594,456 (+)NCBI
RefSeq Acc Id: XM_063266462   ⟹   XP_063122532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
RefSeq Acc Id: XM_063266463   ⟹   XP_063122533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,568,968 (+)NCBI
RefSeq Acc Id: XR_005488679
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,567,400 (+)NCBI
mRatBN7.28108,682,594 - 108,688,793 (+)NCBI
RefSeq Acc Id: XR_005488680
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,566,974 (+)NCBI
mRatBN7.28108,682,594 - 108,688,368 (+)NCBI
RefSeq Acc Id: XR_005488681
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,566,854 (+)NCBI
mRatBN7.28108,682,594 - 108,688,245 (+)NCBI
RefSeq Acc Id: XR_005488682
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,565,971 (+)NCBI
mRatBN7.28108,682,594 - 108,687,379 (+)NCBI
RefSeq Acc Id: XR_005488683
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,566,108 (+)NCBI
mRatBN7.28108,682,594 - 108,687,498 (+)NCBI
RefSeq Acc Id: XR_005488684
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,561,206 - 117,565,475 (+)NCBI
mRatBN7.28108,682,594 - 108,686,869 (+)NCBI
RefSeq Acc Id: XP_006243933   ⟸   XM_006243871
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006243934   ⟸   XM_006243872
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_038938758   ⟸   XM_039082830
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938759   ⟸   XM_039082831
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938762   ⟸   XM_039082834
- Peptide Label: isoform X11
- UniProtKB: A6I322 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938764   ⟸   XM_039082836
- Peptide Label: isoform X15
- UniProtKB: A6I322 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938761   ⟸   XM_039082833
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038938757   ⟸   XM_039082829
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938760   ⟸   XM_039082832
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038938763   ⟸   XM_039082835
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038938756   ⟸   XM_039082828
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938765   ⟸   XM_039082837
- Peptide Label: isoform X17
- UniProtKB: A6I322 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938767   ⟸   XM_039082839
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038938766   ⟸   XM_039082838
- Peptide Label: isoform X18
Ensembl Acc Id: ENSRNOP00000047710   ⟸   ENSRNOT00000050702
Ensembl Acc Id: ENSRNOP00000069064   ⟸   ENSRNOT00000083240
RefSeq Acc Id: XP_063122528   ⟸   XM_063266458
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063122530   ⟸   XM_063266460
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063122531   ⟸   XM_063266461
- Peptide Label: isoform X13
- UniProtKB: A6I322 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122533   ⟸   XM_063266463
- Peptide Label: isoform X16
- UniProtKB: A6I322 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122532   ⟸   XM_063266462
- Peptide Label: isoform X14
- UniProtKB: A6I322 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000106202   ⟸   ENSRNOT00000137775
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUE2-F1-model_v2 AlphaFold A0A0G2JUE2 1-196 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306603 AgrOrtholog
BioCyc Gene G2FUF-29163 BioCyc
Ensembl Genes ENSRNOG00000061650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050702.6 UniProtKB/TrEMBL
  ENSRNOT00000083240 ENTREZGENE
  ENSRNOT00000083240.3 UniProtKB/TrEMBL
  ENSRNOT00000137775 ENTREZGENE
  ENSRNOT00000137775.1 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
KEGG Report rno:363144 UniProtKB/TrEMBL
NCBI Gene 363144 ENTREZGENE
PANTHER CADHERIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  CADHERIN-23 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
PhenoGen Cdhr4 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061650 RatGTEx
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0G2JUE2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LKF4_RAT UniProtKB/TrEMBL
  A6I322 ENTREZGENE, UniProtKB/TrEMBL
  F1M102_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Cdhr4  cadherin-related family member 4  AC128059.5    Data merged from RGD:15014242 737654 PROVISIONAL
2021-09-02 AC128059.5    Cdhr4  cadherin-related family member 4  Symbol and/or name change 19259462 PROVISIONAL
2021-08-09 Cdhr4  cadherin-related family member 4  AC128059.5    Symbol and/or name change 19259462 PROVISIONAL
2019-11-08 AC128059.5        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-07-29 Cdhr4  cadherin-related family member 4  Cdh29  cadherin-like 29  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Cdh29  cadherin-like 29  RGD1306603  similar to RIKEN cDNA D330022A01 gene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306603  similar to RIKEN cDNA D330022A01 gene   RGD1306603_predicted  similar to RIKEN cDNA D330022A01 gene (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306603_predicted  similar to RIKEN cDNA D330022A01 gene (predicted)  LOC363144_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363144_predicted  similar to RIKEN cDNA D330022A01 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL