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Gene: Cdhr4 (cadherin-related family member 4) Rattus norvegicus

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Symbol:

Cdhr4

Name:

cadherin-related family member 4

RGD ID:

1306603

Description:

Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. Orthologous to human CDHR4 (cadherin related family member 4); INTERACTS WITH bisphenol A; glycidol; glyphosate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AC128059.5; cadherin-like 29; Cdh29; LOC363144; RGD1306603; similar to RIKEN cDNA D330022A01 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,561,206 - 117,594,456 (+)	NCBI		GRCr8
mRatBN7.2	8	108,682,594 - 108,690,358 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,682,613 - 108,690,367 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	116,771,377 - 116,779,242 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,771,982 - 116,773,868 (+)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	116,125,824 - 116,158,953 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	113,262,207 - 113,269,894 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	113,281,655 - 113,285,203 (+)	NCBI
Celera	8	107,987,299 - 107,995,164 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cdhr4	Rat	Aicardi-Goutieres Syndrome 1		ISO	CDHR4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 1	ClinVar	PMID:16845398 and PMID:28492532
Cdhr4	Rat	developmental and epileptic encephalopathy		ISO	CDHR4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:24358150 and PMID:28492532
Cdhr4	Rat	early infantile epileptic encephalopathy		ISO	CDHR4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:24358150 and PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cdhr4	Rat	1,2-dichloroethane	increases expression	ISO	Cdhr4 (Mus musculus)	6480464	ethylene dichloride results in increased expression of CDHR4 mRNA	CTD	PMID:28960355
Cdhr4	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Cdhr4 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of CDHR4 mRNA	CTD	PMID:22206623
Cdhr4	Rat	17beta-estradiol	increases expression	ISO	CDHR4 (Homo sapiens)	6480464	Estradiol results in increased expression of CDHR4 mRNA	CTD	PMID:31614463
Cdhr4	Rat	aflatoxin B1	increases methylation	ISO	CDHR4 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of CDHR4 intron	CTD	PMID:30157460
Cdhr4	Rat	aristolochic acid A	increases expression	ISO	CDHR4 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of CDHR4 mRNA	CTD	PMID:33212167
Cdhr4	Rat	benzo[a]pyrene	multiple interactions	ISO	Cdhr4 (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CDHR4 mRNA	CTD	PMID:27858113
Cdhr4	Rat	benzo[b]fluoranthene	multiple interactions	ISO	Cdhr4 (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CDHR4 mRNA	CTD	PMID:27858113
Cdhr4	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of CDHR4 mRNA	CTD	PMID:25181051
Cdhr4	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CDHR4 mRNA	CTD	PMID:30816183
Cdhr4	Rat	butanal	decreases expression	ISO	CDHR4 (Homo sapiens)	6480464	butyraldehyde results in decreased expression of CDHR4 mRNA	CTD	PMID:26079696
Cdhr4	Rat	carbon nanotube	decreases expression	ISO	Cdhr4 (Mus musculus)	6480464	Nanotubes and Carbon results in decreased expression of CDHR4 mRNA	CTD	PMID:25554681
Cdhr4	Rat	chloroprene	increases expression	ISO	Cdhr4 (Mus musculus)	6480464	Chloroprene results in increased expression of CDHR4 mRNA	CTD	PMID:23125180
Cdhr4	Rat	chrysene	multiple interactions	ISO	Cdhr4 (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CDHR4 mRNA	CTD	PMID:27858113
Cdhr4	Rat	epoxiconazole	decreases expression	ISO	Cdhr4 (Mus musculus)	6480464	epoxiconazole results in decreased expression of CDHR4 mRNA	CTD	PMID:35436446
Cdhr4	Rat	glycidol	decreases expression	EXP		6480464	glycidol results in decreased expression of CDHR4 mRNA	CTD	PMID:24395379
Cdhr4	Rat	glyphosate	decreases expression	EXP		6480464	Glyphosate results in decreased expression of CDHR4 mRNA	CTD	PMID:38314887
Cdhr4	Rat	maneb	multiple interactions	ISO	Cdhr4 (Mus musculus)	6480464	[Paraquat co-treated with Maneb] affects the expression of CDHR4 mRNA	CTD	PMID:22563483
Cdhr4	Rat	manganese(II) chloride	decreases expression	EXP		6480464	manganese chloride results in decreased expression of CDHR4 mRNA	CTD	PMID:28801915
Cdhr4	Rat	N-methyl-4-phenylpyridinium	decreases expression	EXP		6480464	1-Methyl-4-phenylpyridinium results in decreased expression of CDHR4 mRNA	CTD	PMID:28801915
Cdhr4	Rat	paraquat	decreases expression	ISO	Cdhr4 (Mus musculus)	6480464	Paraquat results in decreased expression of CDHR4 mRNA	CTD	PMID:22563483
Cdhr4	Rat	paraquat	multiple interactions	ISO	Cdhr4 (Mus musculus)	6480464	[Paraquat co-treated with Maneb] affects the expression of CDHR4 mRNA	CTD	PMID:22563483
Cdhr4	Rat	pentane-2,3-dione	decreases expression	EXP		6480464	2 and 3-pentanedione results in decreased expression of CDHR4 mRNA	CTD	PMID:25710175
Cdhr4	Rat	pyridaben	decreases expression	ISO	Cdhr4 (Mus musculus)	6480464	pyridaben results in decreased expression of CDHR4 mRNA	CTD	PMID:22563483
Cdhr4	Rat	sodium arsenite	decreases expression	ISO	CDHR4 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of CDHR4 mRNA	CTD	PMID:29301061
Cdhr4	Rat	sulforaphane	increases expression	ISO	Cdhr4 (Mus musculus)	6480464	sulforaphane results in increased expression of CDHR4 mRNA	CTD	PMID:30529165
Cdhr4	Rat	tetraphene	multiple interactions	ISO	Cdhr4 (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CDHR4 mRNA	CTD	PMID:27858113
Cdhr4	Rat	titanium dioxide	affects expression	ISO	Cdhr4 (Mus musculus)	6480464	titanium dioxide affects the expression of CDHR4 mRNA	CTD	PMID:23557971
Cdhr4	Rat	triptonide	increases expression	ISO	Cdhr4 (Mus musculus)	6480464	triptonide results in increased expression of CDHR4 mRNA	CTD	PMID:33045310

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cdhr4	Rat	cell adhesion	involved_in	IBA	MGI:106671 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Cdhr4	Rat	cell adhesion	involved_in	IEA	InterPro:IPR020894	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Cdhr4	Rat	cell-cell adhesion	involved_in	IEA	InterPro:IPR039808	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Cdhr4	Rat	homophilic cell adhesion via plasma membrane adhesion molecules	involved_in	IEA	InterPro:IPR002126	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cdhr4	Rat	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Cdhr4	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cdhr4	Rat	membrane	located_in	IEA	InterPro:IPR002126 and InterPro:IPR015919	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Cdhr4	Rat	plasma membrane	is_active_in	IBA	MGI:106671 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Cdhr4	Rat	plasma membrane	located_in	IEA	InterPro:IPR020894	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cdhr4	Rat	calcium ion binding	enables	IEA	UniRule:UR000413450	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Cdhr4	Rat	calcium ion binding	enables	IEA	InterPro:IPR002126 and InterPro:IPR015919	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Cdhr4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,561,206 - 117,594,456 (+)	NCBI		GRCr8
mRatBN7.2	8	108,682,594 - 108,690,358 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,682,613 - 108,690,367 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	116,771,377 - 116,779,242 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,771,982 - 116,773,868 (+)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	116,125,824 - 116,158,953 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	113,262,207 - 113,269,894 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	113,281,655 - 113,285,203 (+)	NCBI
Celera	8	107,987,299 - 107,995,164 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

CDHR4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	49,790,732 - 49,802,914 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	49,790,732 - 49,799,873 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	49,828,165 - 49,837,306 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,810,669 - 49,812,272 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	49,793,740 - 49,802,731 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,887,778 - 49,896,303 (-)	NCBI		HuRef
CHM1_1	3	49,780,227 - 49,789,315 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	49,820,605 - 49,832,790 (-)	NCBI		T2T-CHM13v2.0

Cdhr4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,869,656 - 107,876,880 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,869,696 - 107,876,883 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	107,992,457 - 107,999,681 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,992,497 - 107,999,684 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	107,897,372 - 107,902,011 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,897,378 - 107,902,010 (+)	NCBI		MGSCv36	mm8
Celera	9	107,603,500 - 107,608,139 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	59.07	NCBI

Cdhr4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,683,570 - 1,690,834 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,644,995 - 1,690,897 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDHR4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	49,776,987 - 49,788,950 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	49,777,898 - 49,793,698 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	49,722,563 - 49,734,040 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	50,958,512 - 50,969,623 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,958,548 - 50,967,792 (-)	Ensembl	panpan1.1		panPan2

CDHR4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,473,450 - 39,482,158 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,473,848 - 39,482,144 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,391,580 - 39,402,986 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,827,611 - 39,838,858 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,816,974 - 39,838,844 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	39,194,644 - 39,206,069 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	39,598,879 - 39,610,038 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,878,446 - 39,889,860 (+)	NCBI		UU_Cfam_GSD_1.0

Cdhr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,639,020 - 64,646,853 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,399,611 - 1,406,876 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,399,611 - 1,406,876 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDHR4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,322,034 - 32,329,337 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	32,322,030 - 32,329,530 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,501,281 - 35,509,352 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDHR4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666041	155,791,750 - 155,803,044 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdhr4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	3,707,040 - 3,714,348 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	3,707,115 - 3,714,615 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cdhr4
17 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	100149864	120994388	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	102370617	108923645	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat

D10Chm174

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,680,723 - 108,681,193 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	67,827,786 - 67,828,025 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,769,609 - 116,770,078	NCBI	Rnor6.0
Rnor_6.0	10	70,244,687 - 70,244,925	NCBI	Rnor6.0
Rnor_5.0	10	69,875,850 - 69,876,088	UniSTS	Rnor5.0
Rnor_5.0	8	116,123,932 - 116,124,401	UniSTS	Rnor5.0
RGSC_v3.4	8	113,260,260 - 113,260,729	UniSTS	RGSC3.4
RGSC_v3.4	10	71,110,851 - 71,111,089	UniSTS	RGSC3.4
Celera	10	66,772,023 - 66,772,261	UniSTS
Celera	8	107,985,526 - 107,985,995	UniSTS
Cytogenetic Map	8	q32	UniSTS
Cytogenetic Map	10	q26	UniSTS

AU017982

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,687,636 - 108,687,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,776,521 - 116,776,610	NCBI	Rnor6.0
Rnor_5.0	8	116,130,843 - 116,130,932	UniSTS	Rnor5.0
RGSC_v3.4	8	113,267,171 - 113,267,260	UniSTS	RGSC3.4
Celera	8	107,992,443 - 107,992,532	UniSTS
Cytogenetic Map	8	q32	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001433382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050702 ⟹ ENSRNOP00000047710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	108,688,664 - 108,690,367 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083240 ⟹ ENSRNOP00000069064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	108,682,613 - 108,690,367 (+)	Ensembl

RefSeq Acc Id:

XM_006243871 ⟹ XP_006243933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,180 (+)	NCBI
Rnor_6.0	8	116,771,377 - 116,779,082 (+)	NCBI
Rnor_5.0	8	116,125,824 - 116,158,953 (+)	NCBI

Sequence:

show sequence

AATGGAAGAATTCACTGGAAACAGAGGAAGATGGGATTTTCCAGCAGCTCCTGGAGCCTGCCAGGCATCTAAATGCTCTGTCCCAGGGTGGGTGGAGTCAGAGCTGGAGTCTGGGAAGCCACCTGATT
GCTGTGTTTAAGCAACTAACCAGGCAACAGAGTTAGCCTGAGTTAGCCTGAGAAACCGCTTCCTCCACCATTCTTCAGGCTACCATGATGATGCTCAGGCTCCTGGAGTTTCTTTTTGCTTTACTTAT
CCCTGTCTTCCCCAGCCTGCCCTGGTCCACAGATATCCTTGAGAGCAAAGGCCCTGGTACCGTCCTTCAGACTTTCCTCTTCAACTGTTCCTCCTACATGCCTACCCTGGAGTTACTCAGTGTGAAAC
CACCCACCAGCTTCTTCAACAAACCCAGCCTGCAGGGGCAAAAGGGACTCTACCGGGGGAAGGTGACCTTAAGTAGCTCCGCTCGGCTGGATGCCCTTGCAGTAAACTACTATGAGCTGCAACTGCGG
TACACATGCGGTAACTTTGTGGTAGACGGATCATTCTTTGTTCATGTGCTGCGGGACCCTGGGCGTATCCATTGTACTGGTGCATTTGCCAGCCCAGCTGGGGAATTCATTTACGTGCCAGAGACAGT
CACACCTGGGGCCCTGCTGTACACTCTGTTGCTGCCTGGCCTAGGAGGCCAGAGAGCCCAGATGAACATCACCAGTGCCCAAGACCCTCCAGTCTTCCCCGGGCCTTTCTCCATCGATGAGCATGGGC
TGCTGCGGGCACCATCCCAGGGCCTCAGAGGCCAGGCTCAAAAGACCTTCCAGCTGCAGATTTTAGTGTCCTTAGGAAAAAGCCAACGCTGCAAAGGGATGCTGACAGTGAAGGTTTTGCCTGCACCC
CCCAGCCATGTCTCCTTCCTAAAGAAGGCCCAGAGTATCACCATCGCAGAGGATCTGGTTCCCGGGAGCGAGGTGGTTCAGGTCCAAGCTAGGGGACTCAACTTACTGTATGAAATCATCTCCCCACG
GCCCAGTCCACTCTACTCGATTGGACAAGCTGATGGGGTAGTGCGGACCACCGCACCCCTGGATTTGGTTCGTGTTCAGGGCGCGGTGGTCACAAAACTGCAGGTGAAGGCCTTTGAGAGGCTCCGGC
CTTGGGCCAGTGCCGTGTCCGATCTCACGGTTATCGTGCGCGCGGTAAACCAGAGGCCCCCACGCTGCCATCCAGCGCTACTGGTGACTCAAATTCCAGAGACTGCCCTTGAGGGCACTGTGCTAGAC
ACGCTCACGTGTGTTGACCCAGACTCTGCAGGCGCCCCCCTCGACTACCAGCTGCGGTTCCACAGCCCTCCCGACTCTGCCAGCCTCCGTCTTCGTGGCAGAACCCTTGAGGTGAACGCTACACTGGA
CTGTGACGCTCCTGGGGCTTGCTTCCAGCATTTAGCTTCCATCCTGGTGTCCGATGGCGGTCAACCCCAGATGACCGCTGAGGTTCCAGTGCTGGTGATGGTGACACCCGTCAATGAGTTCTCCCCAT
CCTGTATGCCACACACGTTCCGGGTTCGGGAGGATGCAGGGCCCTACACTCTGCTGGGCTCCATAGTGGGCACGGATGTGGATCACCCTCGTAACAGCCTCGAGTACCACATCTCTGGAGGACTCTCC
ACCTTTGCTGTGGATCGCCTGAGTGGAGAACTTCACCTCCTGGGGCCTTTGGACTATGAGCAGCAGAGGCTGTACAGGATCGTTATTCTGCTGATTGATCACAGTCAAGACTGGGACCTCAACAGTCA
CCGATCAGGTTCATGTACCATAACCATTGAGGTTGAGGATGTGAACGATCATGCCCCAGAGTGTGAGCCTCCATTTCAGGAACTCACCATCTACACTGCCCTGGGTCGTAGTATGGAAGTGACTAAGG
TGTCATGTTGGATCCCACAAGAGCCACAGCGCTTGACCCTCTCCTACAGCATCATGGGAGGGAATAGCCAGAGCCGATTTAGACTCCAAGGGACCATCCTGGTGTACAATGACACTGTGTTGGGGCCC
CCGTGGCCAGAGCCGCCCTCCACTCATGAGCTATTGATCCATGTTGCTGATATGGGCCCTTCCACCCCACACCTTAGCACCACAGCCACCATCATTGTGCATCTAGTTCCTTGGAAGGCCAGCACAGT
GGCCACCAGCACCCACCAAAGCACAGTGTCCTCAACAATGACACCCCTCATTGTGACAGACGTAGAGGCTTTCTGGAAGCCAGAGCCCTGGTTTGTGGTAGTGCTGACAGCAACTGGTGCAGTTCTCC
TCCTGGCTCTGGGTTGGCTCCTCGGCAGGATCCTTCGGAGGTTGGCCCAGTCACTACAGGCACCGAGCAAACCAGCCAGAGCTCAGTTGTTAAACAGCATCCAGGGAAGTAGAGGCTCCATTGAGAGG
CAAATGGAGGCACCAAGCATGGAGATGTCCAAGCAACATTTTGATGGCAGAGCCCAAGATGTCTGCAACTTTTCTGAAGCACCAGTTGTGCCAGATGACGACCCAGACCTAGTCCTGTCCCAGCTCTT
CGGGGAGGGGAAGGGAGATGGTGGTAAGGGGAGAGCTCCCCTCATATTCCAGCTCCACCAGTAAATTGTAGCTGACTAATCTGACTCTGGCTGCTGTAGAGGATCTGGTATCCCCTCGCTTACTGTTC
CTTTGAGTCAAACCTCTGGGCTCTCTGCTGAGAAGGCAAAGAGGAGATCAGTTTGGGTCCCTGTGGAAGGGGTGACTACACTGCTGAAGCTAGCCATCCTTTCTTCCTTCCTCTCTCCTGCCCGCCT

hide sequence

RefSeq Acc Id:

XM_006243872 ⟹ XP_006243934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,358 (+)	NCBI
Rnor_6.0	8	116,771,379 - 116,779,242 (+)	NCBI
Rnor_5.0	8	116,125,824 - 116,158,953 (+)	NCBI

Sequence:

show sequence

TGGAAGAATTCACTGGAAACAGAGGAAGATGGGATTTTCCAGCAGCTCCTGGAGCCTGCCAGGCATCTAAATGCTCTGTCCCAGGGTGGGTGGAGTCAGAGCTGGAGTCTGGGAAGCCACCTGATTGC
TGTGTTTAAGCAACTAACCAGGCAACAGAGTTAGCCTGAGTTAGCCTGAGAAACCGCTTCCTCCACCATTCTTCAGGCTACCATGATGATGCTCAGGCTCCTGGAGTTTCTTTTTGCTTTACTTATCC
CTGTCTTCCCCAGCCTGCCCTGGTCCACAGATATCCTTGAGAGCAAAGGCCCTGGTACCGTCCTTCAGACTTTCCTCTTCAACTGTTCCTCCTACATGCCTACCCTGGAGTTACTCAGTGTGAAACCA
CCCACCAGCTTCTTCAACAAACCCAGCCTGCAGGGGCAAAAGGGACTCTACCGGGGGAAGGTGACCTTAAGTAGCTCCGCTCGGCTGGATGCCCTTGCAGTAAACTACTATGAGCTGCAACTGCGGTA
CACATGCGGTAACTTTGTGGTAGACGGATCATTCTTTGTTCATGTGCTGCGGGACCCTGGGCGTATCCATTGTACTGGTGCATTTGCCAGCCCAGCTGGGGAATTCATTTACGTGCCAGAGACAGTCA
CACCTGGGGCCCTGCTGTACACTCTGTTGCTGCCTGGCCTAGGAGGCCAGAGAGCCCAGATGAACATCACCAGTGCCCAAGACCCTCCAGTCTTCCCCGGGCCTTTCTCCATCGATGAGCATGGGCTG
CTGCGGGCACCATCCCAGGGCCTCAGAGGCCAGGCTCAAAAGACCTTCCAGCTGCAGATTTTAGTGTCCTTAGGAAAAAGCCAACGCTGCAAAGGGATGCTGACAGTGAAGGTTTTGCCTGCACCCCC
CAGCCATGTCTCCTTCCTAAAGAAGGCCCAGAGTATCACCATCGCAGAGGATCTGGTTCCCGGGAGCGAGGTGGTTCAGGTCCAAGCTAGGGGACTCAACTTACTGTATGAAATCATCTCCCCACGGC
CCAGTCCACTCTACTCGATTGGACAAGCTGATGGGGTAGTGCGGACCACCGCACCCCTGGATTTGGTTCGTGTTCAGGGCGCGGTGGTCACAAAACTGCAGGTGAAGGCCTTTGAGAGGCTCCGGCCT
TGGGCCAGTGCCGTGTCCGATCTCACGGTTATCGTGCGCGCGGTAAACCAGAGGCCCCCACGCTGCCATCCAGCGCTACTGGTGACTCAAATTCCAGAGACTGCCCTTGAGGGCACTGTGCTAGACAC
GCTCACGTGTGTTGACCCAGACTCTGCAGGCGCCCCCCTCGACTACCAGCTGCGGTTCCACAGCCCTCCCGACTCTGCCAGCCTCCGTCTTCGTGGCAGAACCCTTGAGGTGAACGCTACACTGGACT
GTGACGCTCCTGGGGCTTGCTTCCAGCATTTAGCTTCCATCCTGGTGTCCGATGGCGGTCAACCCCAGATGACCGCTGAGGTTCCAGTGCTGGTGATGGTGACACCCGTCAATGAGTTCTCCCCATCC
TGTATGCCACACACGTTCCGGGTTCGGGAGGATGCAGGGCCCTACACTCTGCTGGGCTCCATAGTGGGCACGGATGTGGATCACCCTCGTAACAGCCTCGAGTACCACATCTCTGGAGGACTCTCCAC
CTTTGCTGTGGATCGCCTGAGTGGAGAACTTCACCTCCTGGGGCCTTTGGACTATGAGCAGCAGAGGCTGTACAGGATCGTTATTCTGCTGATTGATCACAGTCAAGACTGGGACCTCAACAGTCACC
GATCAGGTTCATGTACCATAACCATTGAGGTTGAGGATGTGAACGATCATGCCCCAGAGTGTGAGCCTCCATTTCAGGAACTCACCATCTACACTGCCCTGGGTCGTAGTATGGAAGTGACTAAGGTG
TCATGTTGGATCCCACAAGAGCCACAGCGCTTGACCCTCTCCTACAGCATCATGGGAGGGAATAGCCAGAGCCGATTTAGACTCCAAGGGACCATCCTGGTGTACAATGACACTGTGTTGGGGCCCCC
GTGGCCAGAGCCGCCCTCCACTCATGAGCTATTGATCCATGTTGCTGATATGGGCCCTTCCACCCCACACCTTAGCACCACAGCCACCATCATTGTGCATCTAGTTCCTTGGAAGGCCAGCACAGTGG
CCACCAGCACCCACCAAAGCACAGTGTCCTCAACAATGACACCCCTCATTGTGACAGACGTAGAGGCTTTCTGGAAGCCAGAGCCCTGGTTTGTGGTAGTGCTGACAGCAACTGGTGCAGTTCTCCTC
CTGGCTCTGGGTTGGCTCCTCGGCAGGATCCTTCGGAGGTTGGCCCAGTCACTACAGGCACCGAGCAAACCAGCCAGAGCTCAGTTGTTAAACAGCATCCAGGGAAGTAGAGGCTCCATTGAGAGGCA
AATGGAGGCACCAAGCATGGAGATGTCCAAGCAACATTTTGATGGCAGAGCCCAAGATGTCTGTACGGGGAGAGATTACCTGTTCAGCACACTCACGGGAGCCCGGCGTTGGCTGTGAGGCCAAGTAG
CTGCTTTACTCTGTGGGGAATTCCCTTTTCTCATGATCATAGCCTGGATTTCCAAATCGATTTAGTAATAAAGACTACCAACAGAA

hide sequence

RefSeq Acc Id:

XM_039082828 ⟹ XP_038938756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,182 (+)	NCBI

RefSeq Acc Id:

XM_039082829 ⟹ XP_038938757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,184 (+)	NCBI

RefSeq Acc Id:

XM_039082830 ⟹ XP_038938758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,358 (+)	NCBI

RefSeq Acc Id:

XM_039082831 ⟹ XP_038938759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,358 (+)	NCBI

RefSeq Acc Id:

XM_039082832 ⟹ XP_038938760

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,183 (+)	NCBI

RefSeq Acc Id:

XM_039082833 ⟹ XP_038938761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,185 (+)	NCBI

RefSeq Acc Id:

XM_039082834 ⟹ XP_038938762

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,358 (+)	NCBI

RefSeq Acc Id:

XM_039082835 ⟹ XP_038938763

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,183 (+)	NCBI

RefSeq Acc Id:

XM_039082836 ⟹ XP_038938764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,690,186 (+)	NCBI

RefSeq Acc Id:

XM_039082837 ⟹ XP_038938765

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,567,176 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,688,788 (+)	NCBI

RefSeq Acc Id:

XM_039082838 ⟹ XP_038938766

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,563,388 - 117,568,968 (+)	NCBI
mRatBN7.2	8	108,684,783 - 108,690,183 (+)	NCBI

RefSeq Acc Id:

XM_039082839 ⟹ XP_038938767

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,566,366 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,687,756 (+)	NCBI

RefSeq Acc Id:

XM_063266458 ⟹ XP_063122528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,594,456 (+)	NCBI

RefSeq Acc Id:

XM_063266460 ⟹ XP_063122530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,594,456 (+)	NCBI

RefSeq Acc Id:

XM_063266461 ⟹ XP_063122531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,594,456 (+)	NCBI

RefSeq Acc Id:

XM_063266462 ⟹ XP_063122532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI

RefSeq Acc Id:

XM_063266463 ⟹ XP_063122533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,568,968 (+)	NCBI

RefSeq Acc Id:

XR_005488679

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,567,400 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,688,793 (+)	NCBI

RefSeq Acc Id:

XR_005488680

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,566,974 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,688,368 (+)	NCBI

RefSeq Acc Id:

XR_005488681

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,566,854 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,688,245 (+)	NCBI

RefSeq Acc Id:

XR_005488682

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,565,971 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,687,379 (+)	NCBI

RefSeq Acc Id:

XR_005488683

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,566,108 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,687,498 (+)	NCBI

RefSeq Acc Id:

XR_005488684

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,561,206 - 117,565,475 (+)	NCBI
mRatBN7.2	8	108,682,594 - 108,686,869 (+)	NCBI


Protein RefSeqs	NP_001420311	(Get FASTA)	NCBI Sequence Viewer
	NP_001420312	(Get FASTA)	NCBI Sequence Viewer
	NP_001420313	(Get FASTA)	NCBI Sequence Viewer
	XP_006243933	(Get FASTA)	NCBI Sequence Viewer
	XP_006243934	(Get FASTA)	NCBI Sequence Viewer
	XP_038938756	(Get FASTA)	NCBI Sequence Viewer
	XP_038938757	(Get FASTA)	NCBI Sequence Viewer
	XP_038938758	(Get FASTA)	NCBI Sequence Viewer
	XP_038938759	(Get FASTA)	NCBI Sequence Viewer
	XP_038938760	(Get FASTA)	NCBI Sequence Viewer
	XP_038938761	(Get FASTA)	NCBI Sequence Viewer
	XP_038938762	(Get FASTA)	NCBI Sequence Viewer
	XP_038938763	(Get FASTA)	NCBI Sequence Viewer
	XP_038938764	(Get FASTA)	NCBI Sequence Viewer
	XP_038938765	(Get FASTA)	NCBI Sequence Viewer
	XP_038938766	(Get FASTA)	NCBI Sequence Viewer
	XP_038938767	(Get FASTA)	NCBI Sequence Viewer
	XP_063122528	(Get FASTA)	NCBI Sequence Viewer
	XP_063122530	(Get FASTA)	NCBI Sequence Viewer
	XP_063122531	(Get FASTA)	NCBI Sequence Viewer
	XP_063122532	(Get FASTA)	NCBI Sequence Viewer
	XP_063122533	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000047710.4
	ENSRNOP00000069064
	ENSRNOP00000069064.2
	ENSRNOP00000106202

RefSeq Acc Id:

XP_006243933 ⟸ XM_006243871

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMMLRLLEFLFALLIPVFPSLPWSTDILESKGPGTVLQTFLFNCSSYMPTLELLSVKPPTSFFNKPSLQGQKGLYRGKVTLSSSARLDALAVNYYELQLRYTCGNFVVDGSFFVHVLRDPGRIHCTGA
FASPAGEFIYVPETVTPGALLYTLLLPGLGGQRAQMNITSAQDPPVFPGPFSIDEHGLLRAPSQGLRGQAQKTFQLQILVSLGKSQRCKGMLTVKVLPAPPSHVSFLKKAQSITIAEDLVPGSEVVQV
QARGLNLLYEIISPRPSPLYSIGQADGVVRTTAPLDLVRVQGAVVTKLQVKAFERLRPWASAVSDLTVIVRAVNQRPPRCHPALLVTQIPETALEGTVLDTLTCVDPDSAGAPLDYQLRFHSPPDSAS
LRLRGRTLEVNATLDCDAPGACFQHLASILVSDGGQPQMTAEVPVLVMVTPVNEFSPSCMPHTFRVREDAGPYTLLGSIVGTDVDHPRNSLEYHISGGLSTFAVDRLSGELHLLGPLDYEQQRLYRIV
ILLIDHSQDWDLNSHRSGSCTITIEVEDVNDHAPECEPPFQELTIYTALGRSMEVTKVSCWIPQEPQRLTLSYSIMGGNSQSRFRLQGTILVYNDTVLGPPWPEPPSTHELLIHVADMGPSTPHLSTT
ATIIVHLVPWKASTVATSTHQSTVSSTMTPLIVTDVEAFWKPEPWFVVVLTATGAVLLLALGWLLGRILRRLAQSLQAPSKPARAQLLNSIQGSRGSIERQMEAPSMEMSKQHFDGRAQDVCNFSEAP
VVPDDDPDLVLSQLFGEGKGDGGKGRAPLIFQLHQ

hide sequence

RefSeq Acc Id:

XP_006243934 ⟸ XM_006243872

- Peptide Label:

isoform X5

- Sequence:

show sequence

MMMLRLLEFLFALLIPVFPSLPWSTDILESKGPGTVLQTFLFNCSSYMPTLELLSVKPPTSFFN
KPSLQGQKGLYRGKVTLSSSARLDALAVNYYELQLRYTCGNFVVDGSFFVHVLRDPGRIHCTGAFASPAGEFIYVPETVTPGALLYTLLLPGLGGQRAQMNITSAQDPPVFPGPFSIDEHGLLRAPSQ
GLRGQAQKTFQLQILVSLGKSQRCKGMLTVKVLPAPPSHVSFLKKAQSITIAEDLVPGSEVVQVQARGLNLLYEIISPRPSPLYSIGQADGVVRTTAPLDLVRVQGAVVTKLQVKAFERLRPWASAVS
DLTVIVRAVNQRPPRCHPALLVTQIPETALEGTVLDTLTCVDPDSAGAPLDYQLRFHSPPDSASLRLRGRTLEVNATLDCDAPGACFQHLASILVSDGGQPQMTAEVPVLVMVTPVNEFSPSCMPHTF
RVREDAGPYTLLGSIVGTDVDHPRNSLEYHISGGLSTFAVDRLSGELHLLGPLDYEQQRLYRIVILLIDHSQDWDLNSHRSGSCTITIEVEDVNDHAPECEPPFQELTIYTALGRSMEVTKVSCWIPQ
EPQRLTLSYSIMGGNSQSRFRLQGTILVYNDTVLGPPWPEPPSTHELLIHVADMGPSTPHLSTTATIIVHLVPWKASTVATSTHQSTVSSTMTPLIVTDVEAFWKPEPWFVVVLTATGAVLLLALGWL
LGRILRRLAQSLQAPSKPARAQLLNSIQGSRGSIERQMEAPSMEMSKQHFDGRAQDVCTGRDYLFSTLTGARRWL

hide sequence

RefSeq Acc Id:	XP_038938758 ⟸ XM_039082830
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038938759 ⟸ XM_039082831
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038938762 ⟸ XM_039082834
- Peptide Label:	isoform X11
- UniProtKB:	A6I322 (UniProtKB/TrEMBL)

Protein Domains

Cadherin

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JUE2-F1-model_v2	AlphaFold	A0A0G2JUE2	1-196	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-29163	BioCyc
Ensembl Genes	ENSRNOG00000061650	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050702.5	UniProtKB/TrEMBL
	ENSRNOT00000083240	ENTREZGENE
	ENSRNOT00000083240.2	UniProtKB/TrEMBL
	ENSRNOT00000137775	ENTREZGENE
Gene3D-CATH	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/TrEMBL
	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
KEGG Report	rno:363144	UniProtKB/TrEMBL
NCBI Gene	363144	ENTREZGENE
PANTHER	CADHERIN DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	CADHERIN-23	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
PhenoGen	Cdhr4	PhenoGen
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000061650	RatGTEx
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
UniProt	A0A0G2JUE2	ENTREZGENE, UniProtKB/TrEMBL
	A6I322	ENTREZGENE, UniProtKB/TrEMBL
	F1M102_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Cdhr4	cadherin-related family member 4	AC128059.5		Data merged from RGD:15014242	737654	PROVISIONAL
2021-09-02	AC128059.5		Cdhr4	cadherin-related family member 4	Symbol and/or name change	19259462	PROVISIONAL
2021-08-09	Cdhr4	cadherin-related family member 4	AC128059.5		Symbol and/or name change	19259462	PROVISIONAL
2019-11-08	AC128059.5				Symbol and Name status set to provisional	45752	PROVISIONAL
2011-07-29	Cdhr4	cadherin-related family member 4	Cdh29	cadherin-like 29	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Cdh29	cadherin-like 29	RGD1306603	similar to RIKEN cDNA D330022A01 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1306603	similar to RIKEN cDNA D330022A01 gene	RGD1306603_predicted	similar to RIKEN cDNA D330022A01 gene (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1306603_predicted	similar to RIKEN cDNA D330022A01 gene (predicted)	LOC363144_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC363144_predicted	similar to RIKEN cDNA D330022A01 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar